RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 FAT4Q6V0I7 4981 aa5.88□□□□□ -1.47
CLIP2-201ENST00000223398 MT1MQ8N339 61 aa5.87□□□□□ -1.47
CLIP2-201ENST00000223398 KRTAP9-6A0A140TA67 174 aa5.87□□□□□ -1.47
CLIP2-201ENST00000223398 LCE3EQ5T5B0 92 aa5.86□□□□□ -1.47
CLIP2-201ENST00000223398 LCE2AQ5TA79 106 aaPredicted RBP5.84□□□□□ -1.47
CLIP2-201ENST00000223398 KRTAP4-3Q9BYR4 195 aa5.84□□□□□ -1.48
CLIP2-201ENST00000223398 RNF213Q63HN8 5207 aa5.83□□□□□ -1.48
CLIP2-201ENST00000223398 SPRR5A0A1B0GTR4 108 aa5.83□□□□□ -1.48
CLIP2-201ENST00000223398 LOC100996750A0A140TA64 210 aa5.82□□□□□ -1.48
CLIP2-201ENST00000223398 SYNE1Q8NF91 8797 aaKnown RBP5.7□□□□□ -1.5
CLIP2-201ENST00000223398 MT3P25713 68 aa5.69□□□□□ -1.5
CLIP2-201ENST00000223398 MUC2Q02817 5179 aa5.66□□□□□ -1.5
CLIP2-201ENST00000223398 HMCN2Q8NDA2 5059 aa5.63□□□□□ -1.51
CLIP2-201ENST00000223398 LCE1BQ5T7P3 118 aa5.6□□□□□ -1.51
CLIP2-201ENST00000223398 LCE1DQ5T752 114 aa5.58□□□□□ -1.52
CLIP2-201ENST00000223398 SYNE2Q8WXH0 6885 aaKnown RBP5.57□□□□□ -1.52
CLIP2-201ENST00000223398 KRTAP19-7Q3SYF9 63 aa5.55□□□□□ -1.52
CLIP2-201ENST00000223398 KRTAP9-7A8MTY7 169 aa5.55□□□□□ -1.52
CLIP2-201ENST00000223398 KRTAP20-1Q3LI63 56 aa5.51□□□□□ -1.53
CLIP2-201ENST00000223398 PRM1P04553 51 aa5.38□□□□□ -1.55
CLIP2-201ENST00000223398 MT1AP04731 61 aa5.37□□□□□ -1.55
CLIP2-201ENST00000223398 KRTAP4-9Q9BYQ8 210 aa5.36□□□□□ -1.55
CLIP2-201ENST00000223398 KRTAP6-3Q3LI67 103 aa5.34□□□□□ -1.55
CLIP2-201ENST00000223398 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.33□□□□□ -1.56
CLIP2-201ENST00000223398 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
CLIP2-201ENST00000223398 LCE5AQ5TCM9 118 aa5.26□□□□□ -1.57
CLIP2-201ENST00000223398 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
CLIP2-201ENST00000223398 KRTAP2-1Q9BYU5 128 aa5.26□□□□□ -1.57
CLIP2-201ENST00000223398 LCE1AQ5T7P2 110 aa5.21□□□□□ -1.58
CLIP2-201ENST00000223398 OBSCNQ5VST9 7968 aa5.19□□□□□ -1.58
CLIP2-201ENST00000223398 KRTAP6-1Q3LI64 71 aa5.13□□□□□ -1.59
CLIP2-201ENST00000223398 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
CLIP2-201ENST00000223398 KRTAP2-2Q9BYT5 123 aa5.07□□□□□ -1.6
CLIP2-201ENST00000223398 LCE4AQ5TA78 99 aa5.01□□□□□ -1.61
CLIP2-201ENST00000223398 KRTAP9-6A8MVA2 160 aa5□□□□□ -1.61
CLIP2-201ENST00000223398 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
CLIP2-201ENST00000223398 USH2AO75445 5202 aa4.98□□□□□ -1.61
CLIP2-201ENST00000223398 FCGBPQ9Y6R7 5405 aaPredicted RBP4.9□□□□□ -1.63
CLIP2-201ENST00000223398 DSTQ03001 7570 aaKnown RBP4.89□□□□□ -1.63
CLIP2-201ENST00000223398 LCE1CQ5T751 118 aa4.78□□□□□ -1.64
CLIP2-201ENST00000223398 LCE1EQ5T753 118 aa4.78□□□□□ -1.64
CLIP2-201ENST00000223398 LCE1FQ5T754 118 aa4.78□□□□□ -1.64
CLIP2-201ENST00000223398 MACF1Q9UPN3 7388 aaKnown RBP4.76□□□□□ -1.65
CLIP2-201ENST00000223398 KMT2DO14686 5537 aa4.74□□□□□ -1.65
CLIP2-201ENST00000223398 NEBP20929 6669 aa4.66□□□□□ -1.66
CLIP2-201ENST00000223398 SSPOA2VEC9 5147 aa4.52□□□□□ -1.69
CLIP2-201ENST00000223398 KRTAP5-9P26371 169 aa4.48□□□□□ -1.69
CLIP2-201ENST00000223398 KRTAP9-9Q9BYP9 154 aa4.47□□□□□ -1.69
CLIP2-201ENST00000223398 KRTAP4-6Q9BYQ5 205 aa4.45□□□□□ -1.7
CLIP2-201ENST00000223398 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
CLIP2-201ENST00000223398 MDN1Q9NU22 5596 aa4.37□□□□□ -1.71
CLIP2-201ENST00000223398 KRTAP20-2Q3LI61 65 aa4.28□□□□□ -1.72
CLIP2-201ENST00000223398 MUC19Q7Z5P9 8384 aa4.1□□□□□ -1.75
CLIP2-201ENST00000223398 GPR98Q8WXG9 6306 aa4.1□□□□□ -1.75
CLIP2-201ENST00000223398 KRTAP4-11Q9BYQ6 195 aa4.04□□□□□ -1.76
CLIP2-201ENST00000223398 KRTAP4-12Q9BQ66 201 aa4□□□□□ -1.77
CLIP2-201ENST00000223398 KRTAP4-2Q9BYR5 136 aa4□□□□□ -1.77
CLIP2-201ENST00000223398 KRTAP4-4Q9BYR3 166 aa3.97□□□□□ -1.77
CLIP2-201ENST00000223398 KRTAP5-4Q6L8H1 288 aa3.93□□□□□ -1.78
CLIP2-201ENST00000223398 KRTAP5-5Q701N2 237 aaPredicted RBP3.66□□□□□ -1.82
CLIP2-201ENST00000223398 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
CLIP2-201ENST00000223398 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
CLIP2-201ENST00000223398 HMCN1Q96RW7 5635 aa3.41□□□□□ -1.86
CLIP2-201ENST00000223398 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
CLIP2-201ENST00000223398 KRTAP5-8O75690 187 aa3.3□□□□□ -1.88
CLIP2-201ENST00000223398 PHGR1C9JFL3 82 aa3□□□□□ -1.93
CLIP2-201ENST00000223398 KRTAP5-2Q701N4 177 aa2.99□□□□□ -1.93
CLIP2-201ENST00000223398 KRTAP5-10Q6L8G5 202 aa2.92□□□□□ -1.94
CLIP2-201ENST00000223398 MUC5BQ9HC84 5762 aaPredicted RBP2.89□□□□□ -1.95
CLIP2-201ENST00000223398 AHNAKQ09666 5890 aaKnown RBP2.89□□□□□ -1.95
CLIP2-201ENST00000223398 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
CLIP2-201ENST00000223398 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
CLIP2-201ENST00000223398 KRTAP21-2Q3LI59 83 aa2.56□□□□□ -2
CLIP2-201ENST00000223398 KRTAP5-7Q6L8G8 165 aa2.33□□□□□ -2.04
CLIP2-201ENST00000223398 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
CLIP2-201ENST00000223398 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.07
CLIP2-201ENST00000223398 MUC16Q8WXI7 14507 aa1.73□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 31.8 ms