RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C21orf62-AS1Q17RA5 79 aa6.28□□□□□ -1.4
VPS53-218ENST00000575207 A8MUN3 132 aa6.26□□□□□ -1.41
VPS53-218ENST00000575207 C9JAW5 83 aa6.26□□□□□ -1.41
VPS53-218ENST00000575207 K7EQZ3 153 aa6.26□□□□□ -1.41
VPS53-218ENST00000575207 KRTAP19-3Q7Z4W3 81 aa6.25□□□□□ -1.41
VPS53-218ENST00000575207 MRPL34Q9BQ48 92 aaKnown RBP6.25□□□□□ -1.41
VPS53-218ENST00000575207 BAALC-AS2P0C853 105 aa6.24□□□□□ -1.41
VPS53-218ENST00000575207 NDUFS5O43920 106 aa6.23□□□□□ -1.41
VPS53-218ENST00000575207 PDE6GP18545 87 aa6.23□□□□□ -1.41
VPS53-218ENST00000575207 M0R143 59 aa6.21□□□□□ -1.42
VPS53-218ENST00000575207 ATXN8Q156A1 80 aa6.21□□□□□ -1.42
VPS53-218ENST00000575207 TMEM254Q8TBM7 123 aa6.21□□□□□ -1.42
VPS53-218ENST00000575207 Q5W150 140 aa6.2□□□□□ -1.42
VPS53-218ENST00000575207 CYSTM1Q9H1C7 97 aa6.2□□□□□ -1.42
VPS53-218ENST00000575207 JMJD7-PLA2G4BH0Y9G9 81 aa6.19□□□□□ -1.42
VPS53-218ENST00000575207 MUC5ACP98088 5654 aa6.18□□□□□ -1.42
VPS53-218ENST00000575207 C1orf64Q8NEQ6 169 aa6.17□□□□□ -1.42
VPS53-218ENST00000575207 Q6ZQT0 140 aa6.16□□□□□ -1.42
VPS53-218ENST00000575207 NAA38Q9BRA0 125 aaKnown RBP6.15□□□□□ -1.42
VPS53-218ENST00000575207 MMP24-AS1A0A0U1RRL7 71 aa6.14□□□□□ -1.43
VPS53-218ENST00000575207 A0A1B0GW54 56 aa6.14□□□□□ -1.43
VPS53-218ENST00000575207 MUC5BQ9HC84 5762 aaPredicted RBP6.13□□□□□ -1.43
VPS53-218ENST00000575207 LOC110117498A0A087WWA1 95 aa6.11□□□□□ -1.43
VPS53-218ENST00000575207 C14orf132Q9NPU4 83 aa6.11□□□□□ -1.43
VPS53-218ENST00000575207 H3BS24 57 aa6.1□□□□□ -1.43
VPS53-218ENST00000575207 NREPQ16612 68 aa6.1□□□□□ -1.43
VPS53-218ENST00000575207 hDV103S1A0JD37 113 aa6.09□□□□□ -1.43
VPS53-218ENST00000575207 BATFQ16520 125 aa6.09□□□□□ -1.43
VPS53-218ENST00000575207 TSTD3H0UI37 97 aa6.07□□□□□ -1.44
VPS53-218ENST00000575207 SMIM6P0DI80 62 aa6.06□□□□□ -1.44
VPS53-218ENST00000575207 KRTAP19-7Q3SYF9 63 aa6.06□□□□□ -1.44
VPS53-218ENST00000575207 MT1EP04732 61 aa6.05□□□□□ -1.44
VPS53-218ENST00000575207 H0YAA0 97 aa6.04□□□□□ -1.44
VPS53-218ENST00000575207 KRTAP20-2Q3LI61 65 aa6.02□□□□□ -1.45
VPS53-218ENST00000575207 H3BT86 120 aa5.99□□□□□ -1.45
VPS53-218ENST00000575207 BPY2O14599 106 aa5.98□□□□□ -1.45
VPS53-218ENST00000575207 KRTAP4-7Q9BYR0 210 aa5.98□□□□□ -1.45
VPS53-218ENST00000575207 MT1GP13640 62 aa5.97□□□□□ -1.45
VPS53-218ENST00000575207 C9orf118A6NHY6 69 aa5.96□□□□□ -1.46
VPS53-218ENST00000575207 ADM2Q7Z4H4 148 aa5.96□□□□□ -1.46
VPS53-218ENST00000575207 A0A1W2PPM0 123 aa5.94□□□□□ -1.46
VPS53-218ENST00000575207 A0A087WVE0 104 aa5.93□□□□□ -1.46
VPS53-218ENST00000575207 R4GN34 69 aa5.91□□□□□ -1.46
VPS53-218ENST00000575207 TAX1BP3O14907 124 aa5.9□□□□□ -1.46
VPS53-218ENST00000575207 PP632Q6XCG6 107 aa5.9□□□□□ -1.46
VPS53-218ENST00000575207 CASC2Q6XLA1 102 aa5.9□□□□□ -1.46
VPS53-218ENST00000575207 HCG22E2RYF7 251 aa5.89□□□□□ -1.47
VPS53-218ENST00000575207 SPCS1Q9Y6A9 102 aa5.89□□□□□ -1.47
VPS53-218ENST00000575207 KRTAP19-4Q3LI73 84 aa5.88□□□□□ -1.47
VPS53-218ENST00000575207 CXCL6P80162 114 aa5.86□□□□□ -1.47
VPS53-218ENST00000575207 Q8N9L7 120 aa5.86□□□□□ -1.47
VPS53-218ENST00000575207 UBL5Q9BZL1 73 aa5.85□□□□□ -1.47
VPS53-218ENST00000575207 MT1MQ8N339 61 aa5.84□□□□□ -1.47
VPS53-218ENST00000575207 M0QZ58 72 aa5.8□□□□□ -1.48
VPS53-218ENST00000575207 NDUFC1O43677 76 aa5.8□□□□□ -1.48
VPS53-218ENST00000575207 LINC01554Q52M75 96 aa5.8□□□□□ -1.48
VPS53-218ENST00000575207 KRTAP4-11Q9BYQ6 195 aa5.8□□□□□ -1.48
VPS53-218ENST00000575207 COL5A1-AS1Q5SY13 56 aa5.79□□□□□ -1.48
VPS53-218ENST00000575207 LOC105371267A0A1B0GV96 52 aa5.78□□□□□ -1.48
VPS53-218ENST00000575207 K7EP34 96 aa5.74□□□□□ -1.49
VPS53-218ENST00000575207 KRTAP5-8O75690 187 aa5.73□□□□□ -1.49
VPS53-218ENST00000575207 KRTAP4-3Q9BYR4 195 aa5.73□□□□□ -1.49
VPS53-218ENST00000575207 GTF2H5Q6ZYL4 71 aa5.72□□□□□ -1.49
VPS53-218ENST00000575207 KRTAP4-2Q9BYR5 136 aa5.72□□□□□ -1.49
VPS53-218ENST00000575207 TP53AIP1Q9HCN2 124 aa5.72□□□□□ -1.49
VPS53-218ENST00000575207 PRO0461Q9UI25 63 aa5.69□□□□□ -1.5
VPS53-218ENST00000575207 P0C880 135 aa5.67□□□□□ -1.5
VPS53-218ENST00000575207 F8W1H4 67 aa5.65□□□□□ -1.5
VPS53-218ENST00000575207 C20orf197Q8N268 126 aa5.65□□□□□ -1.5
VPS53-218ENST00000575207 ETDBQ3ZM63 59 aa5.63□□□□□ -1.51
VPS53-218ENST00000575207 SYNE1Q8NF91 8797 aaKnown RBP5.62□□□□□ -1.51
VPS53-218ENST00000575207 KRTAP12-4P60329 112 aa5.62□□□□□ -1.51
VPS53-218ENST00000575207 PCP4L1A6NKN8 68 aa5.61□□□□□ -1.51
VPS53-218ENST00000575207 TRAV22A0A0B4J277 110 aa5.57□□□□□ -1.52
VPS53-218ENST00000575207 LOC101927531A0A1B0GV80 90 aa5.57□□□□□ -1.52
VPS53-218ENST00000575207 MT1LQ93083 61 aa5.57□□□□□ -1.52
VPS53-218ENST00000575207 ACYP1P07311 99 aa5.56□□□□□ -1.52
VPS53-218ENST00000575207 CYP4F30PQ9H0H9 118 aa5.56□□□□□ -1.52
VPS53-218ENST00000575207 HIST1H4AP62805 103 aaKnown RBP5.55□□□□□ -1.52
VPS53-218ENST00000575207 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
VPS53-218ENST00000575207 ATP5EP2Q5VTU8 51 aa5.52□□□□□ -1.53
VPS53-218ENST00000575207 ATOX1O00244 68 aa5.51□□□□□ -1.53
VPS53-218ENST00000575207 KRTAP5-5Q701N2 237 aaPredicted RBP5.51□□□□□ -1.53
VPS53-218ENST00000575207 H0Y9P7 68 aa5.49□□□□□ -1.53
VPS53-218ENST00000575207 UQCRQO14949 82 aa5.49□□□□□ -1.53
VPS53-218ENST00000575207 FAM240AA0A1B0GVK7 77 aa5.46□□□□□ -1.54
VPS53-218ENST00000575207 OBSCNQ5VST9 7968 aa5.43□□□□□ -1.54
VPS53-218ENST00000575207 MT-ATP8P03928 68 aa5.43□□□□□ -1.54
VPS53-218ENST00000575207 MP68P56378 58 aa5.41□□□□□ -1.54
VPS53-218ENST00000575207 KRTAP5-2Q701N4 177 aa5.4□□□□□ -1.54
VPS53-218ENST00000575207 LINC00208Q96KT6 92 aa5.4□□□□□ -1.54
VPS53-218ENST00000575207 LINC00643Q86TS7 51 aa5.39□□□□□ -1.55
VPS53-218ENST00000575207 A0A0D9SG42 100 aa5.32□□□□□ -1.56
VPS53-218ENST00000575207 SCGB1A1P11684 91 aa5.29□□□□□ -1.56
VPS53-218ENST00000575207 J3QR89 54 aa5.28□□□□□ -1.56
VPS53-218ENST00000575207 CAMK2N1Q7Z7J9 78 aa5.27□□□□□ -1.57
VPS53-218ENST00000575207 OCR1Q9BZK8 76 aa5.27□□□□□ -1.57
VPS53-218ENST00000575207 H3BPC8 53 aa5.25□□□□□ -1.57
VPS53-218ENST00000575207 A0A1B0GV90 55 aa5.22□□□□□ -1.57
VPS53-218ENST00000575207 DMAC1Q96GE9 116 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms