RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 MT1XP80297 61 aa1.67□□□□□ -2.14
SNHG1-220ENST00000544550 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
SNHG1-220ENST00000544550 DSTQ03001 7570 aaKnown RBP1.66□□□□□ -2.14
SNHG1-220ENST00000544550 K7ERS5 55 aa1.66□□□□□ -2.14
SNHG1-220ENST00000544550 S100A6P06703 90 aa1.66□□□□□ -2.14
SNHG1-220ENST00000544550 NDUFA5Q16718 116 aa1.66□□□□□ -2.14
SNHG1-220ENST00000544550 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
SNHG1-220ENST00000544550 SVBPQ8N300 66 aa1.66□□□□□ -2.14
SNHG1-220ENST00000544550 PLAC4Q8WY50 150 aa1.66□□□□□ -2.14
SNHG1-220ENST00000544550 SPRR5A0A1B0GTR4 108 aa1.65□□□□□ -2.15
SNHG1-220ENST00000544550 C4orf26Q17RF5 130 aa1.65□□□□□ -2.15
SNHG1-220ENST00000544550 TMEM256-PLSCR3K7ERE1 68 aa1.64□□□□□ -2.15
SNHG1-220ENST00000544550 DNAL4O96015 105 aa1.64□□□□□ -2.15
SNHG1-220ENST00000544550 APOC3P02656 99 aa1.64□□□□□ -2.15
SNHG1-220ENST00000544550 TMEM254Q8TBM7 123 aa1.64□□□□□ -2.15
SNHG1-220ENST00000544550 MRPL34Q9BQ48 92 aaKnown RBP1.64□□□□□ -2.15
SNHG1-220ENST00000544550 VPS25Q9BRG1 176 aa1.64□□□□□ -2.15
SNHG1-220ENST00000544550 A0A1B0GV72 72 aa1.63□□□□□ -2.15
SNHG1-220ENST00000544550 A8MUN3 132 aa1.63□□□□□ -2.15
SNHG1-220ENST00000544550 PDE6GP18545 87 aa1.63□□□□□ -2.15
SNHG1-220ENST00000544550 MT4P47944 62 aa1.63□□□□□ -2.15
SNHG1-220ENST00000544550 RBM3P98179 157 aaKnown RBP1.63□□□□□ -2.15
SNHG1-220ENST00000544550 ORMDL1Q9P0S3 153 aa1.63□□□□□ -2.15
SNHG1-220ENST00000544550 MP68P56378 58 aa1.62□□□□□ -2.15
SNHG1-220ENST00000544550 SPINT4Q6UDR6 99 aa1.62□□□□□ -2.15
SNHG1-220ENST00000544550 hDV103S1A0JD37 113 aa1.61□□□□□ -2.15
SNHG1-220ENST00000544550 KRTDAPP60985 99 aa1.61□□□□□ -2.15
SNHG1-220ENST00000544550 Q6ZQT0 140 aa1.61□□□□□ -2.15
SNHG1-220ENST00000544550 LCE3DQ9BYE3 92 aa1.61□□□□□ -2.15
SNHG1-220ENST00000544550 A0A0B4J2C4 111 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 MMP24-AS1A0A0U1RRL7 71 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 A0A1B0GW54 56 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 H0YAA0 97 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 ATOH7Q8N100 152 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 C1orf64Q8NEQ6 169 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 HMCN1Q96RW7 5635 aa1.6□□□□□ -2.15
SNHG1-220ENST00000544550 BATFQ16520 125 aa1.59□□□□□ -2.15
SNHG1-220ENST00000544550 C9JAW5 83 aa1.58□□□□□ -2.16
SNHG1-220ENST00000544550 AHNAK2Q8IVF2 5795 aa1.58□□□□□ -2.16
SNHG1-220ENST00000544550 KRTAP19-3Q7Z4W3 81 aa1.57□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BKO60814 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BJP06899 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 COX6CP09669 75 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BOP23527 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 S100A2P29034 98 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BBP33778 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BDP58876 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BCP62807 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST2H2BEQ16778 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BHQ93079 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BNQ99877 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HIST1H2BMQ99879 126 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 CYSTM1Q9H1C7 97 aa1.56□□□□□ -2.16
SNHG1-220ENST00000544550 HCG22E2RYF7 251 aa1.55□□□□□ -2.16
SNHG1-220ENST00000544550 NREPQ16612 68 aa1.55□□□□□ -2.16
SNHG1-220ENST00000544550 PRO1854Q9UHT4 67 aa1.55□□□□□ -2.16
SNHG1-220ENST00000544550 R4GN34 69 aa1.55□□□□□ -2.16
SNHG1-220ENST00000544550 ADM2Q7Z4H4 148 aa1.54□□□□□ -2.16
SNHG1-220ENST00000544550 HIST3H2BBQ8N257 126 aa1.54□□□□□ -2.16
SNHG1-220ENST00000544550 A6NED7 52 aa1.53□□□□□ -2.16
SNHG1-220ENST00000544550 JMJD7-PLA2G4BH0Y9G9 81 aa1.53□□□□□ -2.16
SNHG1-220ENST00000544550 DLEU1O43261 78 aa1.53□□□□□ -2.16
SNHG1-220ENST00000544550 NDUFC1O43677 76 aa1.53□□□□□ -2.16
SNHG1-220ENST00000544550 PP632Q6XCG6 107 aa1.53□□□□□ -2.16
SNHG1-220ENST00000544550 CASC2Q6XLA1 102 aa1.53□□□□□ -2.16
SNHG1-220ENST00000544550 NAA38Q9BRA0 125 aaKnown RBP1.53□□□□□ -2.16
SNHG1-220ENST00000544550 LOC110117498A0A087WWA1 95 aa1.52□□□□□ -2.17
SNHG1-220ENST00000544550 COX8AP10176 69 aa1.52□□□□□ -2.17
SNHG1-220ENST00000544550 C20orf197Q8N268 126 aa1.52□□□□□ -2.17
SNHG1-220ENST00000544550 HIGD1BQ9P298 99 aa1.52□□□□□ -2.17
SNHG1-220ENST00000544550 A0A1B0GU33 70 aa1.51□□□□□ -2.17
SNHG1-220ENST00000544550 MT1EP04732 61 aa1.51□□□□□ -2.17
SNHG1-220ENST00000544550 HIST1H2BLQ99880 126 aa1.51□□□□□ -2.17
SNHG1-220ENST00000544550 M0QZ58 72 aa1.5□□□□□ -2.17
SNHG1-220ENST00000544550 BAALC-AS2P0C853 105 aa1.5□□□□□ -2.17
SNHG1-220ENST00000544550 MT1GP13640 62 aa1.5□□□□□ -2.17
SNHG1-220ENST00000544550 KRTAP19-7Q3SYF9 63 aa1.5□□□□□ -2.17
SNHG1-220ENST00000544550 LINC01554Q52M75 96 aa1.49□□□□□ -2.17
SNHG1-220ENST00000544550 A0A087WVE0 104 aa1.48□□□□□ -2.17
SNHG1-220ENST00000544550 S100A1P23297 94 aa1.48□□□□□ -2.17
SNHG1-220ENST00000544550 FXYD2P54710 66 aa1.47□□□□□ -2.17
SNHG1-220ENST00000544550 KRTAP20-2Q3LI61 65 aa1.47□□□□□ -2.17
SNHG1-220ENST00000544550 VAMP8Q9BV40 100 aa1.47□□□□□ -2.17
SNHG1-220ENST00000544550 TP53AIP1Q9HCN2 124 aa1.47□□□□□ -2.17
SNHG1-220ENST00000544550 C14orf132Q9NPU4 83 aa1.47□□□□□ -2.17
SNHG1-220ENST00000544550 ATXN8Q156A1 80 aa1.46□□□□□ -2.18
SNHG1-220ENST00000544550 KRTAP25-1Q3LHN0 102 aa1.46□□□□□ -2.18
SNHG1-220ENST00000544550 C14orf144Q96I85 54 aa1.46□□□□□ -2.18
SNHG1-220ENST00000544550 ACYP1P07311 99 aa1.45□□□□□ -2.18
SNHG1-220ENST00000544550 PMAIP1Q13794 54 aa1.45□□□□□ -2.18
SNHG1-220ENST00000544550 MT1MQ8N339 61 aa1.45□□□□□ -2.18
SNHG1-220ENST00000544550 CYP4F30PQ9H0H9 118 aa1.45□□□□□ -2.18
SNHG1-220ENST00000544550 H3BPC8 53 aa1.44□□□□□ -2.18
SNHG1-220ENST00000544550 K7ERJ3 54 aa1.44□□□□□ -2.18
SNHG1-220ENST00000544550 P0C880 135 aa1.44□□□□□ -2.18
SNHG1-220ENST00000544550 LOC101927531A0A1B0GV80 90 aa1.43□□□□□ -2.18
SNHG1-220ENST00000544550 MT-ATP8P03928 68 aa1.43□□□□□ -2.18
SNHG1-220ENST00000544550 HIST1H4AP62805 103 aaKnown RBP1.43□□□□□ -2.18
SNHG1-220ENST00000544550 HSD52Q0P140 79 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms