RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SNURFQ9Y675 71 aa7.2□□□□□ -1.26
USP39-217ENST00000491659 H3BPC8 53 aa7.18□□□□□ -1.26
USP39-217ENST00000491659 C4orf26Q17RF5 130 aa7.18□□□□□ -1.26
USP39-217ENST00000491659 H0Y9P7 68 aa7.15□□□□□ -1.26
USP39-217ENST00000491659 CYSTM1Q9H1C7 97 aa7.14□□□□□ -1.27
USP39-217ENST00000491659 H7BZZ5 65 aa7.13□□□□□ -1.27
USP39-217ENST00000491659 ATP5EP56381 51 aaPredicted RBP7.12□□□□□ -1.27
USP39-217ENST00000491659 SSPOA2VEC9 5147 aa7.12□□□□□ -1.27
USP39-217ENST00000491659 TRAV22A0A0B4J277 110 aa7.11□□□□□ -1.27
USP39-217ENST00000491659 LINC00208Q96KT6 92 aa7.11□□□□□ -1.27
USP39-217ENST00000491659 KRTAP19-1Q8IUB9 90 aa7.1□□□□□ -1.27
USP39-217ENST00000491659 C1orf64Q8NEQ6 169 aa7.09□□□□□ -1.27
USP39-217ENST00000491659 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.07□□□□□ -1.28
USP39-217ENST00000491659 S4R3F8 94 aa7.06□□□□□ -1.28
USP39-217ENST00000491659 RPS28P62857 69 aaKnown RBP7.05□□□□□ -1.28
USP39-217ENST00000491659 KRTAP3-1Q9BYR8 98 aa7.03□□□□□ -1.28
USP39-217ENST00000491659 LOC101927531A0A1B0GV80 90 aa7□□□□□ -1.29
USP39-217ENST00000491659 SERP1Q9Y6X1 66 aa7□□□□□ -1.29
USP39-217ENST00000491659 CYP4F30PQ9H0H9 118 aa6.99□□□□□ -1.29
USP39-217ENST00000491659 KRTAP9-7A8MTY7 169 aa6.98□□□□□ -1.29
USP39-217ENST00000491659 KRTAP19-6Q3LI70 58 aa6.98□□□□□ -1.29
USP39-217ENST00000491659 CSAG1Q6PB30 78 aa6.98□□□□□ -1.29
USP39-217ENST00000491659 LCA10Q71F78 164 aa6.98□□□□□ -1.29
USP39-217ENST00000491659 SPANXA2-OT1Q8N9U9 137 aa6.98□□□□□ -1.29
USP39-217ENST00000491659 FCGBPQ9Y6R7 5405 aaPredicted RBP6.97□□□□□ -1.29
USP39-217ENST00000491659 SMIM26A0A096LP01 95 aa6.86□□□□□ -1.31
USP39-217ENST00000491659 KRTAP3-3Q9BYR6 98 aa6.84□□□□□ -1.31
USP39-217ENST00000491659 SPRR2GQ9BYE4 73 aa6.8□□□□□ -1.32
USP39-217ENST00000491659 Q5VV11 94 aa6.79□□□□□ -1.32
USP39-217ENST00000491659 A8MUN3 132 aa6.77□□□□□ -1.33
USP39-217ENST00000491659 ACYP2P14621 99 aa6.77□□□□□ -1.33
USP39-217ENST00000491659 KRTAP19-8Q3LI54 63 aa6.75□□□□□ -1.33
USP39-217ENST00000491659 MT1BP07438 61 aa6.74□□□□□ -1.33
USP39-217ENST00000491659 COA5Q86WW8 74 aa6.74□□□□□ -1.33
USP39-217ENST00000491659 CRIPTQ9P021 101 aa6.73□□□□□ -1.33
USP39-217ENST00000491659 DMAC1Q96GE9 116 aa6.71□□□□□ -1.34
USP39-217ENST00000491659 V9GYY9 64 aa6.71□□□□□ -1.34
USP39-217ENST00000491659 A6NN06 94 aa6.7□□□□□ -1.34
USP39-217ENST00000491659 MACF1Q9UPN3 7388 aaKnown RBP6.69□□□□□ -1.34
USP39-217ENST00000491659 H0YAA0 97 aa6.69□□□□□ -1.34
USP39-217ENST00000491659 CHKB-CPT1BH3BT56 60 aa6.68□□□□□ -1.34
USP39-217ENST00000491659 Q1T7F1 81 aa6.66□□□□□ -1.34
USP39-217ENST00000491659 KRTAP6-3Q3LI67 103 aa6.62□□□□□ -1.35
USP39-217ENST00000491659 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
USP39-217ENST00000491659 KRTAP10-5P60370 271 aa6.6□□□□□ -1.35
USP39-217ENST00000491659 SYNE2Q8WXH0 6885 aaKnown RBP6.59□□□□□ -1.35
USP39-217ENST00000491659 SPTSSBQ8NFR3 76 aa6.57□□□□□ -1.36
USP39-217ENST00000491659 LINC01558Q9Y6Z2 57 aa6.54□□□□□ -1.36
USP39-217ENST00000491659 PRR15LQ9BU68 103 aa6.51□□□□□ -1.37
USP39-217ENST00000491659 PSPHP1O15172 72 aa6.5□□□□□ -1.37
USP39-217ENST00000491659 R4GN34 69 aa6.47□□□□□ -1.37
USP39-217ENST00000491659 P0C880 135 aa6.44□□□□□ -1.38
USP39-217ENST00000491659 PLAC4Q8WY50 150 aa6.43□□□□□ -1.38
USP39-217ENST00000491659 A0A1B0GU69 56 aa6.42□□□□□ -1.38
USP39-217ENST00000491659 M0QZ58 72 aa6.42□□□□□ -1.38
USP39-217ENST00000491659 SEC61GP60059 68 aa6.42□□□□□ -1.38
USP39-217ENST00000491659 PRO2289Q9P1D8 64 aa6.41□□□□□ -1.38
USP39-217ENST00000491659 KRTAP3-2Q9BYR7 98 aa6.37□□□□□ -1.39
USP39-217ENST00000491659 A6NED7 52 aa6.36□□□□□ -1.39
USP39-217ENST00000491659 BRK1Q8WUW1 75 aa6.36□□□□□ -1.39
USP39-217ENST00000491659 MT1XP80297 61 aa6.34□□□□□ -1.39
USP39-217ENST00000491659 KRTAP5-9P26371 169 aa6.33□□□□□ -1.4
USP39-217ENST00000491659 LINC01554Q52M75 96 aa6.32□□□□□ -1.4
USP39-217ENST00000491659 PRO0628Q9UI54 55 aa6.3□□□□□ -1.4
USP39-217ENST00000491659 UQCR11O14957 56 aa6.26□□□□□ -1.41
USP39-217ENST00000491659 CDC42SE1Q9NRR8 79 aa6.25□□□□□ -1.41
USP39-217ENST00000491659 MUC12Q9UKN1 5478 aa6.23□□□□□ -1.41
USP39-217ENST00000491659 NEBP20929 6669 aa6.22□□□□□ -1.41
USP39-217ENST00000491659 KRTAP12-2P59991 146 aa6.19□□□□□ -1.42
USP39-217ENST00000491659 MIR22HGQ0VDD5 57 aa6.19□□□□□ -1.42
USP39-217ENST00000491659 A0A1B0GU33 70 aa6.18□□□□□ -1.42
USP39-217ENST00000491659 SPATA8Q6RVD6 105 aa6.18□□□□□ -1.42
USP39-217ENST00000491659 SPRR2FQ96RM1 72 aa6.17□□□□□ -1.42
USP39-217ENST00000491659 KRTAP8-1Q8IUC2 63 aa6.16□□□□□ -1.42
USP39-217ENST00000491659 KRTAP20-1Q3LI63 56 aa6.15□□□□□ -1.42
USP39-217ENST00000491659 KMT2DO14686 5537 aa6.15□□□□□ -1.43
USP39-217ENST00000491659 H3BS24 57 aa6.08□□□□□ -1.44
USP39-217ENST00000491659 SPRR2EP22531 72 aa6.08□□□□□ -1.44
USP39-217ENST00000491659 SPRR2BP35325 72 aa6.08□□□□□ -1.44
USP39-217ENST00000491659 SPRR2AP35326 72 aa6.08□□□□□ -1.44
USP39-217ENST00000491659 A8MU10 97 aa6.07□□□□□ -1.44
USP39-217ENST00000491659 MDN1Q9NU22 5596 aa6.06□□□□□ -1.44
USP39-217ENST00000491659 PMAIP1Q13794 54 aa6.05□□□□□ -1.44
USP39-217ENST00000491659 KRTAP4-8A0A0G2JLE6 195 aa6.04□□□□□ -1.44
USP39-217ENST00000491659 KRTAP10-7P60409 375 aaPredicted RBP6.04□□□□□ -1.44
USP39-217ENST00000491659 KRTAP4-8Q9BYQ9 185 aa6.04□□□□□ -1.44
USP39-217ENST00000491659 KRTAP10-12P60413 245 aa6.02□□□□□ -1.45
USP39-217ENST00000491659 KRTAP13-4Q3LI77 160 aa6.02□□□□□ -1.45
USP39-217ENST00000491659 K7ERS5 55 aa5.99□□□□□ -1.45
USP39-217ENST00000491659 KRTAP2-3P0C7H8 128 aa5.97□□□□□ -1.45
USP39-217ENST00000491659 LCE1AQ5T7P2 110 aa5.97□□□□□ -1.45
USP39-217ENST00000491659 CAMK2N1Q7Z7J9 78 aa5.97□□□□□ -1.45
USP39-217ENST00000491659 KRTAP2-4Q9BYR9 128 aa5.97□□□□□ -1.45
USP39-217ENST00000491659 A0A0D9SG42 100 aa5.88□□□□□ -1.47
USP39-217ENST00000491659 SPRR2DP22532 72 aa5.88□□□□□ -1.47
USP39-217ENST00000491659 KTN1-AS1Q86SY8 53 aa5.81□□□□□ -1.48
USP39-217ENST00000491659 SPINT4Q6UDR6 99 aa5.8□□□□□ -1.48
USP39-217ENST00000491659 KRTAP2-2Q9BYT5 123 aa5.78□□□□□ -1.48
USP39-217ENST00000491659 KRTAP2-1Q9BYU5 128 aa5.78□□□□□ -1.48
USP39-217ENST00000491659 KRTAP12-1P59990 96 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms