RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 A0A096LPF7 62 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 NDUFC1O43677 76 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 PMCHL1Q16048 86 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 DEFB110Q30KQ9 67 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 LINC01556Q5JQF7 62 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 PSMG4Q5JS54 123 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 C6orf201Q7Z4U5 140 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 SERP2Q8N6R1 65 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 AP4S1Q9Y587 144 aa-0.19□□□□□ -2.44
CPSF3-205ENST00000489629 H0Y9P7 68 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 ATOX1O00244 68 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 ARMS2P0C7Q2 107 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 ACBD7Q8N6N7 88 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 VAMP8Q9BV40 100 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 DPY30Q9C005 99 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 PSENENQ9NZ42 101 aa-0.2□□□□□ -2.44
CPSF3-205ENST00000489629 CPSF4LA6NMK7 179 aaKnown RBP-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 SYS1-DBNDD2H3BUS1 97 aa-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 M0R143 59 aa-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 DEFB130BP0DP73 79 aa-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 DEFB130AP0DP74 79 aa-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 FAUP35544 74 aaKnown RBP-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 WFDC10BQ8IUB3 73 aa-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 SNHG12Q9BXW3 62 aa-0.21□□□□□ -2.44
CPSF3-205ENST00000489629 F8WEM9 126 aa-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 H3BQF6 201 aa-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 HMGA1P17096 107 aaKnown RBP-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 DEFB1P60022 68 aa-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 COL5A1-AS1Q5SY13 56 aa-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 USMG5Q96IX5 58 aa-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 HIGD1BQ9P298 99 aa-0.22□□□□□ -2.44
CPSF3-205ENST00000489629 TRBV7-7A0A0K0K1E9 115 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 CCL22O00626 93 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 SPINK4O60575 86 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 LINC00032P0C843 101 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 SPART-AS1P0CW21 52 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 HTN1P15515 57 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 GNGT1P63211 74 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 H1FX-AS1Q4G0G2 97 aa-0.23□□□□□ -2.45
CPSF3-205ENST00000489629 COX8AP10176 69 aa-0.24□□□□□ -2.45
CPSF3-205ENST00000489629 HILPDAQ9Y5L2 63 aa-0.24□□□□□ -2.45
CPSF3-205ENST00000489629 A0A096LNI7 61 aa-0.25□□□□□ -2.45
CPSF3-205ENST00000489629 IGLC2P0DOY2 106 aa-0.25□□□□□ -2.45
CPSF3-205ENST00000489629 IGLC3P0DOY3 106 aa-0.25□□□□□ -2.45
CPSF3-205ENST00000489629 COX14Q96I36 57 aa-0.25□□□□□ -2.45
CPSF3-205ENST00000489629 C20orf78Q9BR46 151 aa-0.25□□□□□ -2.45
CPSF3-205ENST00000489629 S4R3F8 94 aa-0.25□□□□□ -2.45
CPSF3-205ENST00000489629 A8MTW9 85 aa-0.26□□□□□ -2.45
CPSF3-205ENST00000489629 LEPROTL1O95214 131 aa-0.26□□□□□ -2.45
CPSF3-205ENST00000489629 PKIAP61925 76 aa-0.26□□□□□ -2.45
CPSF3-205ENST00000489629 DEFB114Q30KQ6 69 aa-0.26□□□□□ -2.45
CPSF3-205ENST00000489629 ETDBQ3ZM63 59 aa-0.26□□□□□ -2.45
CPSF3-205ENST00000489629 D6R8Y8 96 aa-0.27□□□□□ -2.45
CPSF3-205ENST00000489629 I3L3M4 83 aa-0.27□□□□□ -2.45
CPSF3-205ENST00000489629 TDRG1Q3Y452 100 aa-0.27□□□□□ -2.45
CPSF3-205ENST00000489629 MUSTN1Q8IVN3 82 aa-0.27□□□□□ -2.45
CPSF3-205ENST00000489629 LEAP2Q969E1 77 aa-0.27□□□□□ -2.45
CPSF3-205ENST00000489629 MRPL34Q9BQ48 92 aaKnown RBP-0.27□□□□□ -2.45
CPSF3-205ENST00000489629 K7EP34 96 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 GYPAP02724 150 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 S100A8P05109 93 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 HMGN3Q15651 99 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 CLPSL2Q6UWE3 100 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 ZNF720Q7Z2F6 126 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 WFDC13Q8IUB5 93 aa-0.28□□□□□ -2.45
CPSF3-205ENST00000489629 DEFB131AP59861 70 aa-0.29□□□□□ -2.46
CPSF3-205ENST00000489629 NOP10Q9NPE3 64 aaKnown RBP-0.3□□□□□ -2.46
CPSF3-205ENST00000489629 M0QZ58 72 aa-0.31□□□□□ -2.46
CPSF3-205ENST00000489629 PRLHP81277 87 aa-0.31□□□□□ -2.46
CPSF3-205ENST00000489629 ALKAL2Q6UX46 152 aa-0.31□□□□□ -2.46
CPSF3-205ENST00000489629 RABAC1Q9UI14 185 aa-0.31□□□□□ -2.46
CPSF3-205ENST00000489629 NDUFA4O00483 81 aa-0.32□□□□□ -2.46
CPSF3-205ENST00000489629 MRPL33O75394 65 aaKnown RBP-0.32□□□□□ -2.46
CPSF3-205ENST00000489629 LINC01546A6NGU7 62 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 IQCF6A8MYZ5 107 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 H0YGG7 62 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 H3BNG1 76 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 M0R1W7 72 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 HMGN2P05204 90 aaKnown RBP-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 PLGLAQ15195 96 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 NMSQ5H8A3 153 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 HEPN1Q6WQI6 88 aa-0.33□□□□□ -2.46
CPSF3-205ENST00000489629 SFTA3P0C7M3 94 aa-0.34□□□□□ -2.46
CPSF3-205ENST00000489629 COX7BP24311 80 aa-0.34□□□□□ -2.46
CPSF3-205ENST00000489629 C9orf62Q8N4C0 152 aa-0.34□□□□□ -2.46
CPSF3-205ENST00000489629 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.34□□□□□ -2.46
CPSF3-205ENST00000489629 PEA15Q15121 130 aa-0.35□□□□□ -2.47
CPSF3-205ENST00000489629 MINOS1Q5TGZ0 78 aa-0.35□□□□□ -2.47
CPSF3-205ENST00000489629 ENHOQ6UWT2 76 aa-0.35□□□□□ -2.47
CPSF3-205ENST00000489629 GAFA1Q96PS6 74 aa-0.35□□□□□ -2.47
CPSF3-205ENST00000489629 RHPN1-AS1Q9BWJ2 59 aa-0.35□□□□□ -2.47
CPSF3-205ENST00000489629 CDKN2A-AS1Q9UH64 79 aa-0.35□□□□□ -2.47
CPSF3-205ENST00000489629 NDUFA3O95167 84 aa-0.36□□□□□ -2.47
CPSF3-205ENST00000489629 PYY3Q5JQD4 70 aa-0.36□□□□□ -2.47
CPSF3-205ENST00000489629 TRAV21A0A0B4J279 112 aa-0.37□□□□□ -2.47
CPSF3-205ENST00000489629 A0A1B0GUT8 65 aa-0.37□□□□□ -2.47
CPSF3-205ENST00000489629 TMEM167AQ8TBQ9 72 aa-0.37□□□□□ -2.47
CPSF3-205ENST00000489629 Q9H521 79 aa-0.37□□□□□ -2.47
CPSF3-205ENST00000489629 MYMXA0A1B0GTQ4 84 aa-0.38□□□□□ -2.47
CPSF3-205ENST00000489629 RPS27P42677 84 aaKnown RBP-0.38□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms