RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520		A0A087WVE0	104 aa		4.5	□□□□□ -1.69
USP4-213	ENST00000488520	SSPO	A2VEC9	5147 aa		4.5	□□□□□ -1.69
USP4-213	ENST00000488520	SPINK7	P58062	85 aa		4.49	□□□□□ -1.69
USP4-213	ENST00000488520	RBM12B-AS1	Q9P1G2	102 aa		4.49	□□□□□ -1.69
USP4-213	ENST00000488520	USH2A	O75445	5202 aa		4.49	□□□□□ -1.69
USP4-213	ENST00000488520	UQCRQ	O14949	82 aa		4.48	□□□□□ -1.69
USP4-213	ENST00000488520	FAM236D	A0A1B0GTK5	79 aa		4.47	□□□□□ -1.69
USP4-213	ENST00000488520	MT-ATP8	P03928	68 aa		4.47	□□□□□ -1.69
USP4-213	ENST00000488520	FAM236C	P0DP71	79 aa		4.47	□□□□□ -1.69
USP4-213	ENST00000488520		Q5W150	140 aa		4.45	□□□□□ -1.7
USP4-213	ENST00000488520	KRTAP5-11	Q6L8G4	156 aa		4.45	□□□□□ -1.7
USP4-213	ENST00000488520	C7orf65	Q6ZTY9	151 aa		4.45	□□□□□ -1.7
USP4-213	ENST00000488520	TRAV22	A0A0B4J277	110 aa		4.44	□□□□□ -1.7
USP4-213	ENST00000488520	ATOX1	O00244	68 aa		4.44	□□□□□ -1.7
USP4-213	ENST00000488520	MP68	P56378	58 aa		4.44	□□□□□ -1.7
USP4-213	ENST00000488520	C5orf47	Q569G3	176 aa		4.43	□□□□□ -1.7
USP4-213	ENST00000488520	LCE1E	Q5T753	118 aa		4.43	□□□□□ -1.7
USP4-213	ENST00000488520	SMIM20	Q8N5G0	67 aa		4.43	□□□□□ -1.7
USP4-213	ENST00000488520	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.43	□□□□□ -1.7
USP4-213	ENST00000488520		H0Y9P7	68 aa		4.42	□□□□□ -1.7
USP4-213	ENST00000488520	LOC101927531	A0A1B0GV80	90 aa		4.41	□□□□□ -1.7
USP4-213	ENST00000488520	FAM236A	A0A1B0GUQ0	79 aa		4.4	□□□□□ -1.71
USP4-213	ENST00000488520	FAM236B	A0A1B0GV22	79 aa		4.4	□□□□□ -1.71
USP4-213	ENST00000488520	HRES1	P13985	223 aa		4.39	□□□□□ -1.71
USP4-213	ENST00000488520	C1orf64	Q8NEQ6	169 aa		4.39	□□□□□ -1.71
USP4-213	ENST00000488520	LINC00208	Q96KT6	92 aa		4.39	□□□□□ -1.71
USP4-213	ENST00000488520	OCR1	Q9BZK8	76 aa		4.38	□□□□□ -1.71
USP4-213	ENST00000488520	TRAV7	A0A075B6U4	112 aa		4.37	□□□□□ -1.71
USP4-213	ENST00000488520		H3BPC8	53 aa		4.37	□□□□□ -1.71
USP4-213	ENST00000488520	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.37	□□□□□ -1.71
USP4-213	ENST00000488520	CYP4F30P	Q9H0H9	118 aa		4.37	□□□□□ -1.71
USP4-213	ENST00000488520	MT2A	P02795	61 aa		4.36	□□□□□ -1.71
USP4-213	ENST00000488520	C4orf26	Q17RF5	130 aa		4.34	□□□□□ -1.71
USP4-213	ENST00000488520	MT1F	P04733	61 aa		4.33	□□□□□ -1.72
USP4-213	ENST00000488520	MACF1	Q9UPN3	7388 aa	Known RBP	4.33	□□□□□ -1.72
USP4-213	ENST00000488520	SYNE2	Q8WXH0	6885 aa	Known RBP	4.32	□□□□□ -1.72
USP4-213	ENST00000488520	H1FX-AS1	Q4G0G2	97 aa		4.32	□□□□□ -1.72
USP4-213	ENST00000488520	KRTAP10-10	P60014	251 aa		4.31	□□□□□ -1.72
USP4-213	ENST00000488520	SERP2	Q8N6R1	65 aa		4.31	□□□□□ -1.72
USP4-213	ENST00000488520	KLKP1	Q107X0	134 aa		4.26	□□□□□ -1.73
USP4-213	ENST00000488520		A8MUN3	132 aa		4.25	□□□□□ -1.73
USP4-213	ENST00000488520	C20orf197	Q8N268	126 aa		4.25	□□□□□ -1.73
USP4-213	ENST00000488520	ANAPC13	Q9BS18	74 aa		4.25	□□□□□ -1.73
USP4-213	ENST00000488520	COX7C	P15954	63 aa		4.24	□□□□□ -1.73
USP4-213	ENST00000488520	SNURF	Q9Y675	71 aa		4.24	□□□□□ -1.73
USP4-213	ENST00000488520		S4R3F8	94 aa		4.23	□□□□□ -1.73
USP4-213	ENST00000488520	KRTAP19-6	Q3LI70	58 aa		4.22	□□□□□ -1.73
USP4-213	ENST00000488520	ACYP2	P14621	99 aa		4.2	□□□□□ -1.74
USP4-213	ENST00000488520	CSAG1	Q6PB30	78 aa		4.2	□□□□□ -1.74
USP4-213	ENST00000488520	NDUFC1	O43677	76 aa		4.19	□□□□□ -1.74
USP4-213	ENST00000488520	KRTAP6-3	Q3LI67	103 aa		4.18	□□□□□ -1.74
USP4-213	ENST00000488520	KRTAP10-5	P60370	271 aa		4.16	□□□□□ -1.74
USP4-213	ENST00000488520	LCA10	Q71F78	164 aa		4.16	□□□□□ -1.74
USP4-213	ENST00000488520	SPANXA2-OT1	Q8N9U9	137 aa		4.15	□□□□□ -1.75
USP4-213	ENST00000488520	DMAC1	Q96GE9	116 aa		4.15	□□□□□ -1.75
USP4-213	ENST00000488520	CHKB-CPT1B	H3BT56	60 aa		4.14	□□□□□ -1.75
USP4-213	ENST00000488520	SPTSSB	Q8NFR3	76 aa		4.14	□□□□□ -1.75
USP4-213	ENST00000488520	LCE1F	Q5T754	118 aa		4.11	□□□□□ -1.75
USP4-213	ENST00000488520	CCDC179	H3BU77	68 aa		4.09	□□□□□ -1.75
USP4-213	ENST00000488520	KRTAP10-12	P60413	245 aa		4.09	□□□□□ -1.75
USP4-213	ENST00000488520		H7BZZ5	65 aa		4.07	□□□□□ -1.76
USP4-213	ENST00000488520	MUC12	Q9UKN1	5478 aa		4.03	□□□□□ -1.76
USP4-213	ENST00000488520	NEB	P20929	6669 aa		4.03	□□□□□ -1.76
USP4-213	ENST00000488520	ATP5E	P56381	51 aa	Predicted RBP	4.03	□□□□□ -1.76
USP4-213	ENST00000488520	KRTAP20-1	Q3LI63	56 aa		4.03	□□□□□ -1.76
USP4-213	ENST00000488520	COA5	Q86WW8	74 aa		4.02	□□□□□ -1.77
USP4-213	ENST00000488520	CYSTM1	Q9H1C7	97 aa		4.02	□□□□□ -1.77
USP4-213	ENST00000488520	ADM2	Q7Z4H4	148 aa		4.01	□□□□□ -1.77
USP4-213	ENST00000488520		H0YAA0	97 aa		4	□□□□□ -1.77
USP4-213	ENST00000488520	SEC61G	P60059	68 aa		3.99	□□□□□ -1.77
USP4-213	ENST00000488520	TMEM258	P61165	79 aa		3.99	□□□□□ -1.77
USP4-213	ENST00000488520	CRIPT	Q9P021	101 aa		3.98	□□□□□ -1.77
USP4-213	ENST00000488520		A6NN06	94 aa		3.97	□□□□□ -1.77
USP4-213	ENST00000488520	SERP1	Q9Y6X1	66 aa		3.96	□□□□□ -1.78
USP4-213	ENST00000488520	KRTAP9-6	A8MVA2	160 aa		3.92	□□□□□ -1.78
USP4-213	ENST00000488520		R4GN34	69 aa		3.92	□□□□□ -1.78
USP4-213	ENST00000488520	MT1B	P07438	61 aa		3.89	□□□□□ -1.79
USP4-213	ENST00000488520		P0C880	135 aa		3.89	□□□□□ -1.79
USP4-213	ENST00000488520	NDUFAF8	A1L188	74 aa		3.88	□□□□□ -1.79
USP4-213	ENST00000488520		M0QZ58	72 aa		3.88	□□□□□ -1.79
USP4-213	ENST00000488520	LCE3C	Q5T5A8	94 aa		3.88	□□□□□ -1.79
USP4-213	ENST00000488520		A0A1B0GU69	56 aa		3.87	□□□□□ -1.79
USP4-213	ENST00000488520	KRTAP5-9	P26371	169 aa		3.87	□□□□□ -1.79
USP4-213	ENST00000488520		Q5VV11	94 aa		3.87	□□□□□ -1.79
USP4-213	ENST00000488520	PRR15L	Q9BU68	103 aa		3.87	□□□□□ -1.79
USP4-213	ENST00000488520	SPRR2G	Q9BYE4	73 aa		3.86	□□□□□ -1.79
USP4-213	ENST00000488520	KMT2D	O14686	5537 aa		3.84	□□□□□ -1.79
USP4-213	ENST00000488520	KRTAP2-3	P0C7H8	128 aa		3.84	□□□□□ -1.79
USP4-213	ENST00000488520	LINC01554	Q52M75	96 aa		3.84	□□□□□ -1.79
USP4-213	ENST00000488520	KRTAP2-4	Q9BYR9	128 aa		3.84	□□□□□ -1.79
USP4-213	ENST00000488520	MDN1	Q9NU22	5596 aa		3.84	□□□□□ -1.8
USP4-213	ENST00000488520	PLAC4	Q8WY50	150 aa		3.83	□□□□□ -1.8
USP4-213	ENST00000488520	KRTAP19-8	Q3LI54	63 aa		3.82	□□□□□ -1.8
USP4-213	ENST00000488520		A0A1B0GU33	70 aa		3.81	□□□□□ -1.8
USP4-213	ENST00000488520	KRTAP5-1	Q6L8H4	278 aa		3.8	□□□□□ -1.8
USP4-213	ENST00000488520	PRAC1	Q96KF2	57 aa		3.8	□□□□□ -1.8
USP4-213	ENST00000488520		V9GYY9	64 aa		3.8	□□□□□ -1.8
USP4-213	ENST00000488520	LINC01558	Q9Y6Z2	57 aa		3.79	□□□□□ -1.8
USP4-213	ENST00000488520	SMIM26	A0A096LP01	95 aa		3.76	□□□□□ -1.81
USP4-213	ENST00000488520	SPRR2E	P22531	72 aa		3.76	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms