RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 DEFB116Q30KQ4 102 aa7.44□□□□□ -1.22
LIG1-218ENST00000599322 LINC00472Q9H8W2 130 aa7.44□□□□□ -1.22
LIG1-218ENST00000599322 CRCT1Q9UGL9 99 aa7.44□□□□□ -1.22
LIG1-218ENST00000599322 IGHV6-1A0A0B4J1U7 121 aa7.42□□□□□ -1.22
LIG1-218ENST00000599322 A0A1B0GW54 56 aa7.42□□□□□ -1.22
LIG1-218ENST00000599322 C9orf118A6NHY6 69 aa7.42□□□□□ -1.22
LIG1-218ENST00000599322 M0R2T5 61 aa7.42□□□□□ -1.22
LIG1-218ENST00000599322 C8orf87E5RJ46 101 aa7.41□□□□□ -1.22
LIG1-218ENST00000599322 NDUFB1O75438 58 aa7.41□□□□□ -1.22
LIG1-218ENST00000599322 MT1HP80294 61 aa7.39□□□□□ -1.23
LIG1-218ENST00000599322 Q6ZQT0 140 aa7.38□□□□□ -1.23
LIG1-218ENST00000599322 LOC110117498A0A087WWA1 95 aa7.37□□□□□ -1.23
LIG1-218ENST00000599322 A0A1B0GVX0 72 aa7.37□□□□□ -1.23
LIG1-218ENST00000599322 A0A1W2PPM0 123 aa7.35□□□□□ -1.23
LIG1-218ENST00000599322 GTF2H5Q6ZYL4 71 aa7.35□□□□□ -1.23
LIG1-218ENST00000599322 C14orf132Q9NPU4 83 aa7.34□□□□□ -1.23
LIG1-218ENST00000599322 H3BT86 120 aa7.32□□□□□ -1.24
LIG1-218ENST00000599322 K7EP34 96 aa7.32□□□□□ -1.24
LIG1-218ENST00000599322 NREPQ16612 68 aa7.32□□□□□ -1.24
LIG1-218ENST00000599322 KRTAP16-1A8MUX0 517 aa7.31□□□□□ -1.24
LIG1-218ENST00000599322 NOTCH2NLQ7Z3S9 236 aa7.31□□□□□ -1.24
LIG1-218ENST00000599322 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
LIG1-218ENST00000599322 FAM236DA0A1B0GTK5 79 aa7.29□□□□□ -1.24
LIG1-218ENST00000599322 FAM236CP0DP71 79 aa7.29□□□□□ -1.24
LIG1-218ENST00000599322 A8MWP4 228 aa7.28□□□□□ -1.24
LIG1-218ENST00000599322 KRTAP10-6P60371 365 aaPredicted RBP7.28□□□□□ -1.24
LIG1-218ENST00000599322 RBM12B-AS1Q9P1G2 102 aa7.28□□□□□ -1.24
LIG1-218ENST00000599322 SPCS1Q9Y6A9 102 aa7.28□□□□□ -1.24
LIG1-218ENST00000599322 FLGP20930 4061 aaPredicted RBP7.27□□□□□ -1.25
LIG1-218ENST00000599322 MTURNQ8N3F0 131 aa7.24□□□□□ -1.25
LIG1-218ENST00000599322 C8orf17Q9NRJ1 99 aa7.24□□□□□ -1.25
LIG1-218ENST00000599322 F8W1H4 67 aa7.23□□□□□ -1.25
LIG1-218ENST00000599322 ZCCHC13Q8WW36 166 aaKnown RBP7.23□□□□□ -1.25
LIG1-218ENST00000599322 IGKV3D-7A0A0C4DH55 119 aa7.21□□□□□ -1.26
LIG1-218ENST00000599322 PRR15Q8IV56 129 aa7.21□□□□□ -1.26
LIG1-218ENST00000599322 Q6ZVQ6 151 aa7.2□□□□□ -1.26
LIG1-218ENST00000599322 Q8N9P0 234 aaPredicted RBP7.19□□□□□ -1.26
LIG1-218ENST00000599322 BPY2O14599 106 aa7.18□□□□□ -1.26
LIG1-218ENST00000599322 PRO0461Q9UI25 63 aa7.18□□□□□ -1.26
LIG1-218ENST00000599322 NDUFS5O43920 106 aa7.15□□□□□ -1.26
LIG1-218ENST00000599322 SPINK7P58062 85 aa7.15□□□□□ -1.26
LIG1-218ENST00000599322 TMEM254Q8TBM7 123 aa7.15□□□□□ -1.26
LIG1-218ENST00000599322 MRPL34Q9BQ48 92 aaKnown RBP7.15□□□□□ -1.26
LIG1-218ENST00000599322 K7ERU9 68 aa7.14□□□□□ -1.27
LIG1-218ENST00000599322 hDV103S1A0JD37 113 aa7.13□□□□□ -1.27
LIG1-218ENST00000599322 HRES1P13985 223 aa7.13□□□□□ -1.27
LIG1-218ENST00000599322 K7EQZ3 153 aa7.11□□□□□ -1.27
LIG1-218ENST00000599322 UBL5Q9BZL1 73 aa7.11□□□□□ -1.27
LIG1-218ENST00000599322 MMP24-AS1A0A0U1RRL7 71 aa7.1□□□□□ -1.27
LIG1-218ENST00000599322 SMCPP49901 116 aaPredicted RBP7.09□□□□□ -1.27
LIG1-218ENST00000599322 MPLKIPQ8TAP9 179 aa7.09□□□□□ -1.27
LIG1-218ENST00000599322 J3QR89 54 aa7.08□□□□□ -1.28
LIG1-218ENST00000599322 ETDBQ3ZM63 59 aa7.05□□□□□ -1.28
LIG1-218ENST00000599322 CASC2Q6XLA1 102 aa7.05□□□□□ -1.28
LIG1-218ENST00000599322 WFDC13Q8IUB5 93 aa7.05□□□□□ -1.28
LIG1-218ENST00000599322 Q8N9L7 120 aa7.01□□□□□ -1.29
LIG1-218ENST00000599322 LINC00846Q9NV44 126 aa7□□□□□ -1.29
LIG1-218ENST00000599322 HCG22E2RYF7 251 aa6.99□□□□□ -1.29
LIG1-218ENST00000599322 IGKV2D-30A0A075B6S6 120 aa6.98□□□□□ -1.29
LIG1-218ENST00000599322 IGKV2-30P06310 120 aa6.98□□□□□ -1.29
LIG1-218ENST00000599322 CXCL6P80162 114 aa6.98□□□□□ -1.29
LIG1-218ENST00000599322 C7orf65Q6ZTY9 151 aa6.98□□□□□ -1.29
LIG1-218ENST00000599322 SSPOA2VEC9 5147 aa6.97□□□□□ -1.29
LIG1-218ENST00000599322 KRTAP9-8Q9BYQ0 159 aa6.96□□□□□ -1.3
LIG1-218ENST00000599322 USH2AO75445 5202 aa6.95□□□□□ -1.3
LIG1-218ENST00000599322 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.95□□□□□ -1.3
LIG1-218ENST00000599322 FAM240AA0A1B0GVK7 77 aa6.94□□□□□ -1.3
LIG1-218ENST00000599322 KRTAP9-7A8MTY7 169 aa6.93□□□□□ -1.3
LIG1-218ENST00000599322 KRTAP10-10P60014 251 aa6.91□□□□□ -1.3
LIG1-218ENST00000599322 H1FX-AS1Q4G0G2 97 aa6.91□□□□□ -1.3
LIG1-218ENST00000599322 Q5W150 140 aa6.91□□□□□ -1.3
LIG1-218ENST00000599322 ACYP1P07311 99 aa6.9□□□□□ -1.3
LIG1-218ENST00000599322 MT2AP02795 61 aa6.89□□□□□ -1.31
LIG1-218ENST00000599322 TP53AIP1Q9HCN2 124 aa6.88□□□□□ -1.31
LIG1-218ENST00000599322 SCGB1A1P11684 91 aa6.85□□□□□ -1.31
LIG1-218ENST00000599322 C4orf26Q17RF5 130 aa6.82□□□□□ -1.32
LIG1-218ENST00000599322 MT1FP04733 61 aa6.81□□□□□ -1.32
LIG1-218ENST00000599322 FCGBPQ9Y6R7 5405 aaPredicted RBP6.81□□□□□ -1.32
LIG1-218ENST00000599322 LCE2BO14633 110 aa6.78□□□□□ -1.32
LIG1-218ENST00000599322 ATP5EP2Q5VTU8 51 aa6.78□□□□□ -1.32
LIG1-218ENST00000599322 LINC00643Q86TS7 51 aa6.76□□□□□ -1.33
LIG1-218ENST00000599322 KRTAP19-1Q8IUB9 90 aa6.76□□□□□ -1.33
LIG1-218ENST00000599322 HIST1H4AP62805 103 aaKnown RBP6.75□□□□□ -1.33
LIG1-218ENST00000599322 IMUPQ9GZP8 106 aa6.75□□□□□ -1.33
LIG1-218ENST00000599322 MT-ATP8P03928 68 aa6.74□□□□□ -1.33
LIG1-218ENST00000599322 KRTAP9-3Q9BYQ3 159 aa6.74□□□□□ -1.33
LIG1-218ENST00000599322 PCP4P48539 62 aa6.73□□□□□ -1.33
LIG1-218ENST00000599322 C1orf64Q8NEQ6 169 aa6.73□□□□□ -1.33
LIG1-218ENST00000599322 TRAV22A0A0B4J277 110 aa6.7□□□□□ -1.34
LIG1-218ENST00000599322 S4R3F8 94 aa6.7□□□□□ -1.34
LIG1-218ENST00000599322 MACF1Q9UPN3 7388 aaKnown RBP6.68□□□□□ -1.34
LIG1-218ENST00000599322 LOC101927531A0A1B0GV80 90 aa6.68□□□□□ -1.34
LIG1-218ENST00000599322 C5orf47Q569G3 176 aa6.67□□□□□ -1.34
LIG1-218ENST00000599322 CSAG1Q6PB30 78 aa6.67□□□□□ -1.34
LIG1-218ENST00000599322 UQCRQO14949 82 aa6.66□□□□□ -1.34
LIG1-218ENST00000599322 CYP4F30PQ9H0H9 118 aa6.66□□□□□ -1.34
LIG1-218ENST00000599322 FAM236AA0A1B0GUQ0 79 aa6.65□□□□□ -1.34
LIG1-218ENST00000599322 FAM236BA0A1B0GV22 79 aa6.65□□□□□ -1.34
LIG1-218ENST00000599322 ATOX1O00244 68 aa6.65□□□□□ -1.34
LIG1-218ENST00000599322 SYNE2Q8WXH0 6885 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms