RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 C9JAW5 83 aa7.88□□□□□ -1.15
TRIM28-205ENST00000595028 COX6B2Q6YFQ2 88 aa7.88□□□□□ -1.15
TRIM28-205ENST00000595028 DSCR8Q96T75 97 aa7.88□□□□□ -1.15
TRIM28-205ENST00000595028 VPS25Q9BRG1 176 aa7.88□□□□□ -1.15
TRIM28-205ENST00000595028 K7EP34 96 aa7.86□□□□□ -1.15
TRIM28-205ENST00000595028 KRTAP10-6P60371 365 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-205ENST00000595028 DEFB116Q30KQ4 102 aa7.86□□□□□ -1.15
TRIM28-205ENST00000595028 GTF2H5Q6ZYL4 71 aa7.86□□□□□ -1.15
TRIM28-205ENST00000595028 LINC00313P59037 77 aa7.85□□□□□ -1.15
TRIM28-205ENST00000595028 KRTAP16-1A8MUX0 517 aa7.84□□□□□ -1.15
TRIM28-205ENST00000595028 SSPOA2VEC9 5147 aa7.84□□□□□ -1.15
TRIM28-205ENST00000595028 MTURNQ8N3F0 131 aa7.83□□□□□ -1.16
TRIM28-205ENST00000595028 H3BT86 120 aa7.82□□□□□ -1.16
TRIM28-205ENST00000595028 C21orf62-AS1Q17RA5 79 aa7.82□□□□□ -1.16
TRIM28-205ENST00000595028 USH2AO75445 5202 aa7.82□□□□□ -1.16
TRIM28-205ENST00000595028 IGHV6-1A0A0B4J1U7 121 aa7.81□□□□□ -1.16
TRIM28-205ENST00000595028 NOTCH2NLQ7Z3S9 236 aa7.81□□□□□ -1.16
TRIM28-205ENST00000595028 JMJD7-PLA2G4BH0Y9G9 81 aa7.8□□□□□ -1.16
TRIM28-205ENST00000595028 Q6ZQT0 140 aa7.79□□□□□ -1.16
TRIM28-205ENST00000595028 LOC110117498A0A087WWA1 95 aa7.78□□□□□ -1.16
TRIM28-205ENST00000595028 A0A1B0GVX0 72 aa7.78□□□□□ -1.16
TRIM28-205ENST00000595028 C8orf87E5RJ46 101 aa7.77□□□□□ -1.17
TRIM28-205ENST00000595028 M0R2T5 61 aa7.77□□□□□ -1.17
TRIM28-205ENST00000595028 A0A1B0GV90 55 aa7.76□□□□□ -1.17
TRIM28-205ENST00000595028 J3KT08 172 aa7.76□□□□□ -1.17
TRIM28-205ENST00000595028 C14orf132Q9NPU4 83 aa7.75□□□□□ -1.17
TRIM28-205ENST00000595028 A0A1B0GW54 56 aa7.74□□□□□ -1.17
TRIM28-205ENST00000595028 PDE6GP18545 87 aa7.74□□□□□ -1.17
TRIM28-205ENST00000595028 FCGBPQ9Y6R7 5405 aaPredicted RBP7.73□□□□□ -1.17
TRIM28-205ENST00000595028 F8W1H4 67 aa7.73□□□□□ -1.17
TRIM28-205ENST00000595028 PRO0461Q9UI25 63 aa7.73□□□□□ -1.17
TRIM28-205ENST00000595028 SMCPP49901 116 aaPredicted RBP7.72□□□□□ -1.17
TRIM28-205ENST00000595028 A8MWP4 228 aa7.68□□□□□ -1.18
TRIM28-205ENST00000595028 NDUFB1O75438 58 aa7.68□□□□□ -1.18
TRIM28-205ENST00000595028 SYNE2Q8WXH0 6885 aaKnown RBP7.66□□□□□ -1.18
TRIM28-205ENST00000595028 IGKV3D-7A0A0C4DH55 119 aa7.64□□□□□ -1.19
TRIM28-205ENST00000595028 HRES1P13985 223 aa7.64□□□□□ -1.19
TRIM28-205ENST00000595028 ETDBQ3ZM63 59 aa7.64□□□□□ -1.19
TRIM28-205ENST00000595028 C8orf17Q9NRJ1 99 aa7.64□□□□□ -1.19
TRIM28-205ENST00000595028 MPLKIPQ8TAP9 179 aa7.63□□□□□ -1.19
TRIM28-205ENST00000595028 ZCCHC13Q8WW36 166 aaKnown RBP7.63□□□□□ -1.19
TRIM28-205ENST00000595028 NREPQ16612 68 aa7.62□□□□□ -1.19
TRIM28-205ENST00000595028 Q8N9P0 234 aaPredicted RBP7.62□□□□□ -1.19
TRIM28-205ENST00000595028 FAM236DA0A1B0GTK5 79 aa7.6□□□□□ -1.19
TRIM28-205ENST00000595028 FAM236CP0DP71 79 aa7.6□□□□□ -1.19
TRIM28-205ENST00000595028 PRR15Q8IV56 129 aa7.59□□□□□ -1.19
TRIM28-205ENST00000595028 RBM12B-AS1Q9P1G2 102 aa7.59□□□□□ -1.19
TRIM28-205ENST00000595028 MACF1Q9UPN3 7388 aaKnown RBP7.59□□□□□ -1.19
TRIM28-205ENST00000595028 Q6ZVQ6 151 aa7.57□□□□□ -1.2
TRIM28-205ENST00000595028 MMP24-AS1A0A0U1RRL7 71 aa7.55□□□□□ -1.2
TRIM28-205ENST00000595028 K7EQZ3 153 aa7.54□□□□□ -1.2
TRIM28-205ENST00000595028 SPINK7P58062 85 aa7.54□□□□□ -1.2
TRIM28-205ENST00000595028 TMEM254Q8TBM7 123 aa7.53□□□□□ -1.2
TRIM28-205ENST00000595028 MRPL34Q9BQ48 92 aaKnown RBP7.51□□□□□ -1.21
TRIM28-205ENST00000595028 KRTAP9-8Q9BYQ0 159 aa7.5□□□□□ -1.21
TRIM28-205ENST00000595028 BPY2O14599 106 aa7.49□□□□□ -1.21
TRIM28-205ENST00000595028 hDV103S1A0JD37 113 aa7.48□□□□□ -1.21
TRIM28-205ENST00000595028 UBL5Q9BZL1 73 aa7.47□□□□□ -1.21
TRIM28-205ENST00000595028 WFDC13Q8IUB5 93 aa7.46□□□□□ -1.22
TRIM28-205ENST00000595028 KRTAP19-1Q8IUB9 90 aa7.46□□□□□ -1.22
TRIM28-205ENST00000595028 J3QR89 54 aa7.45□□□□□ -1.22
TRIM28-205ENST00000595028 LINC00846Q9NV44 126 aa7.45□□□□□ -1.22
TRIM28-205ENST00000595028 ACYP1P07311 99 aa7.44□□□□□ -1.22
TRIM28-205ENST00000595028 FAM240AA0A1B0GVK7 77 aa7.43□□□□□ -1.22
TRIM28-205ENST00000595028 NDUFS5O43920 106 aa7.43□□□□□ -1.22
TRIM28-205ENST00000595028 Q8N9L7 120 aa7.43□□□□□ -1.22
TRIM28-205ENST00000595028 MT2AP02795 61 aa7.41□□□□□ -1.22
TRIM28-205ENST00000595028 CASC2Q6XLA1 102 aa7.38□□□□□ -1.23
TRIM28-205ENST00000595028 MT1FP04733 61 aa7.36□□□□□ -1.23
TRIM28-205ENST00000595028 Q5W150 140 aa7.35□□□□□ -1.23
TRIM28-205ENST00000595028 HCG22E2RYF7 251 aa7.34□□□□□ -1.23
TRIM28-205ENST00000595028 K7ERU9 68 aa7.34□□□□□ -1.23
TRIM28-205ENST00000595028 IGKV2D-30A0A075B6S6 120 aa7.33□□□□□ -1.24
TRIM28-205ENST00000595028 IGKV2-30P06310 120 aa7.33□□□□□ -1.24
TRIM28-205ENST00000595028 C7orf65Q6ZTY9 151 aa7.33□□□□□ -1.24
TRIM28-205ENST00000595028 CXCL6P80162 114 aa7.31□□□□□ -1.24
TRIM28-205ENST00000595028 LCE2BO14633 110 aa7.3□□□□□ -1.24
TRIM28-205ENST00000595028 KRTAP10-10P60014 251 aa7.3□□□□□ -1.24
TRIM28-205ENST00000595028 ATP5EP2Q5VTU8 51 aa7.3□□□□□ -1.24
TRIM28-205ENST00000595028 LINC00643Q86TS7 51 aa7.28□□□□□ -1.24
TRIM28-205ENST00000595028 H1FX-AS1Q4G0G2 97 aa7.27□□□□□ -1.25
TRIM28-205ENST00000595028 KRTAP9-3Q9BYQ3 159 aa7.26□□□□□ -1.25
TRIM28-205ENST00000595028 NEBP20929 6669 aa7.25□□□□□ -1.25
TRIM28-205ENST00000595028 KRTAP6-3Q3LI67 103 aa7.23□□□□□ -1.25
TRIM28-205ENST00000595028 HIST1H4AP62805 103 aaKnown RBP7.22□□□□□ -1.25
TRIM28-205ENST00000595028 C4orf26Q17RF5 130 aa7.19□□□□□ -1.26
TRIM28-205ENST00000595028 TP53AIP1Q9HCN2 124 aa7.17□□□□□ -1.26
TRIM28-205ENST00000595028 KRTAP19-6Q3LI70 58 aa7.14□□□□□ -1.27
TRIM28-205ENST00000595028 A0A087WVE0 104 aa7.12□□□□□ -1.27
TRIM28-205ENST00000595028 MUC12Q9UKN1 5478 aa7.11□□□□□ -1.27
TRIM28-205ENST00000595028 MT-ATP8P03928 68 aa7.1□□□□□ -1.27
TRIM28-205ENST00000595028 KRTAP3-1Q9BYR8 98 aa7.08□□□□□ -1.28
TRIM28-205ENST00000595028 IMUPQ9GZP8 106 aa7.08□□□□□ -1.28
TRIM28-205ENST00000595028 C1orf64Q8NEQ6 169 aa7.06□□□□□ -1.28
TRIM28-205ENST00000595028 S4R3F8 94 aa7.04□□□□□ -1.28
TRIM28-205ENST00000595028 TRAV22A0A0B4J277 110 aa7.02□□□□□ -1.29
TRIM28-205ENST00000595028 KRTAP20-1Q3LI63 56 aa7.02□□□□□ -1.29
TRIM28-205ENST00000595028 C5orf47Q569G3 176 aa7.02□□□□□ -1.29
TRIM28-205ENST00000595028 SCGB1A1P11684 91 aa7.01□□□□□ -1.29
TRIM28-205ENST00000595028 CYP4F30PQ9H0H9 118 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms