RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 LINC00337Q8N6G1 96 aa3.96□□□□□ -1.78
VPS53-213ENST00000572334 XAGE1AQ9HD64 81 aa3.96□□□□□ -1.78
VPS53-213ENST00000572334 TRBV7-4A0A0J9YYF1 115 aa3.95□□□□□ -1.78
VPS53-213ENST00000572334 PRR4Q16378 134 aa3.95□□□□□ -1.78
VPS53-213ENST00000572334 SOSTDC1Q6X4U4 206 aa3.95□□□□□ -1.78
VPS53-213ENST00000572334 Q6ZQT0 140 aa3.95□□□□□ -1.78
VPS53-213ENST00000572334 TOMM7Q9P0U1 55 aa3.95□□□□□ -1.78
VPS53-213ENST00000572334 IGKV2-28A0A075B6P5 120 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 A0A0U1RRA0 63 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 BPY2O14599 106 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 IGKV2D-28P01615 120 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 KRTAP13-2Q52LG2 175 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 Q6ZVQ6 151 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 FAM19A1Q7Z5A9 133 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 KRTAP13-1Q8IUC0 172 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 FAT4Q6V0I7 4981 aa3.94□□□□□ -1.78
VPS53-213ENST00000572334 UBE2AP49459 152 aa3.93□□□□□ -1.78
VPS53-213ENST00000572334 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.93□□□□□ -1.78
VPS53-213ENST00000572334 CYP4F30PQ9H0H9 118 aa3.93□□□□□ -1.78
VPS53-213ENST00000572334 ANAPC11Q9NYG5 84 aa3.93□□□□□ -1.78
VPS53-213ENST00000572334 SNURFQ9Y675 71 aa3.93□□□□□ -1.78
VPS53-213ENST00000572334 IGLV5-37A0A075B6J1 123 aa3.92□□□□□ -1.78
VPS53-213ENST00000572334 MPLKIPQ8TAP9 179 aa3.92□□□□□ -1.78
VPS53-213ENST00000572334 LIMD2Q9BT23 127 aa3.92□□□□□ -1.78
VPS53-213ENST00000572334 RPL37AP8A6NKH3 93 aa3.91□□□□□ -1.78
VPS53-213ENST00000572334 VPREB1P12018 145 aa3.91□□□□□ -1.78
VPS53-213ENST00000572334 COX7BP24311 80 aa3.91□□□□□ -1.78
VPS53-213ENST00000572334 ELOF1P60002 83 aaKnown RBP3.91□□□□□ -1.78
VPS53-213ENST00000572334 LINC00575Q6W349 94 aa3.91□□□□□ -1.78
VPS53-213ENST00000572334 KTN1-AS1Q86SY8 53 aa3.9□□□□□ -1.79
VPS53-213ENST00000572334 Q8NDZ9 215 aa3.9□□□□□ -1.79
VPS53-213ENST00000572334 TYMSOSQ8TAI1 123 aa3.9□□□□□ -1.79
VPS53-213ENST00000572334 H3BPC8 53 aa3.89□□□□□ -1.79
VPS53-213ENST00000572334 RETNLBQ9BQ08 111 aa3.89□□□□□ -1.79
VPS53-213ENST00000572334 hDV103S1A0JD37 113 aa3.88□□□□□ -1.79
VPS53-213ENST00000572334 ATP11AUNQ6ZP68 121 aa3.88□□□□□ -1.79
VPS53-213ENST00000572334 KRTAP4-11Q9BYQ6 195 aa3.88□□□□□ -1.79
VPS53-213ENST00000572334 FAM229BQ4G0N7 80 aa3.87□□□□□ -1.79
VPS53-213ENST00000572334 M0R378 163 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 MP68P56378 58 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 PRLHP81277 87 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 TPRXLQ17RH7 258 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 C6orf99Q4VX62 202 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 LINC00304Q8N9R0 145 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 OCR1Q9BZK8 76 aa3.86□□□□□ -1.79
VPS53-213ENST00000572334 NKAPP1Q8N9T2 125 aa3.85□□□□□ -1.79
VPS53-213ENST00000572334 SPANXA2-OT1Q8N9U9 137 aa3.85□□□□□ -1.79
VPS53-213ENST00000572334 ETDCA0A1B0GVM5 59 aa3.84□□□□□ -1.79
VPS53-213ENST00000572334 IGLV7-46A0A075B6I9 117 aa3.83□□□□□ -1.8
VPS53-213ENST00000572334 Q6ZQY7 126 aa3.83□□□□□ -1.8
VPS53-213ENST00000572334 TRAV22A0A0B4J277 110 aa3.82□□□□□ -1.8
VPS53-213ENST00000572334 HCG22E2RYF7 251 aa3.82□□□□□ -1.8
VPS53-213ENST00000572334 IGLV6-57P01721 117 aa3.82□□□□□ -1.8
VPS53-213ENST00000572334 C1orf64Q8NEQ6 169 aa3.82□□□□□ -1.8
VPS53-213ENST00000572334 Q9BRP9 147 aa3.82□□□□□ -1.8
VPS53-213ENST00000572334 KRTAP4-1Q9BYQ7 146 aa3.82□□□□□ -1.8
VPS53-213ENST00000572334 KRTAP4-16G5E9R7 235 aaPredicted RBP3.81□□□□□ -1.8
VPS53-213ENST00000572334 IGKV4-1P06312 121 aa3.81□□□□□ -1.8
VPS53-213ENST00000572334 ASB16-AS1Q495Z4 193 aa3.81□□□□□ -1.8
VPS53-213ENST00000572334 SPRR4Q96PI1 79 aa3.81□□□□□ -1.8
VPS53-213ENST00000572334 CHKB-CPT1BH3BT56 60 aa3.8□□□□□ -1.8
VPS53-213ENST00000572334 ZNF73O43830 326 aaPredicted RBP3.8□□□□□ -1.8
VPS53-213ENST00000572334 SPRR1AP35321 89 aa3.8□□□□□ -1.8
VPS53-213ENST00000572334 KRTAP13-3Q3SY46 172 aa3.8□□□□□ -1.8
VPS53-213ENST00000572334 C7orf65Q6ZTY9 151 aa3.8□□□□□ -1.8
VPS53-213ENST00000572334 HIGD2AQ9BW72 106 aa3.8□□□□□ -1.8
VPS53-213ENST00000572334 LCA10Q71F78 164 aa3.79□□□□□ -1.8
VPS53-213ENST00000572334 Q75L30 129 aa3.79□□□□□ -1.8
VPS53-213ENST00000572334 RBM12B-AS1Q9P1G2 102 aa3.79□□□□□ -1.8
VPS53-213ENST00000572334 PSPHP1O15172 72 aa3.78□□□□□ -1.8
VPS53-213ENST00000572334 LINC00208Q96KT6 92 aa3.78□□□□□ -1.8
VPS53-213ENST00000572334 KCNQ1DNQ9H478 68 aa3.78□□□□□ -1.8
VPS53-213ENST00000572334 CDC42SE1Q9NRR8 79 aa3.78□□□□□ -1.8
VPS53-213ENST00000572334 DHRS4-AS1Q9P1J3 65 aa3.78□□□□□ -1.8
VPS53-213ENST00000572334 LOC101927531A0A1B0GV80 90 aa3.77□□□□□ -1.81
VPS53-213ENST00000572334 A6NED7 52 aa3.77□□□□□ -1.81
VPS53-213ENST00000572334 LINC00483Q53H64 154 aa3.77□□□□□ -1.81
VPS53-213ENST00000572334 SPAG11AQ6PDA7 123 aa3.77□□□□□ -1.81
VPS53-213ENST00000572334 Q8NBF4 154 aa3.77□□□□□ -1.81
VPS53-213ENST00000572334 ZCCHC13Q8WW36 166 aaKnown RBP3.77□□□□□ -1.81
VPS53-213ENST00000572334 IGLV5-48A0A075B6I7 105 aa3.75□□□□□ -1.81
VPS53-213ENST00000572334 SMIM29Q86T20 159 aa3.75□□□□□ -1.81
VPS53-213ENST00000572334 Q8N377 158 aa3.75□□□□□ -1.81
VPS53-213ENST00000572334 SPTSSBQ8NFR3 76 aa3.75□□□□□ -1.81
VPS53-213ENST00000572334 A8MUN3 132 aa3.74□□□□□ -1.81
VPS53-213ENST00000572334 KRTAP19-2Q3LHN2 52 aa3.74□□□□□ -1.81
VPS53-213ENST00000572334 Q5VV11 94 aa3.74□□□□□ -1.81
VPS53-213ENST00000572334 KRTAP5-3Q6L8H2 238 aa3.74□□□□□ -1.81
VPS53-213ENST00000572334 CASC2Q6XLA1 102 aa3.74□□□□□ -1.81
VPS53-213ENST00000572334 PRR15LQ9BU68 103 aa3.74□□□□□ -1.81
VPS53-213ENST00000572334 ZNF706Q9Y5V0 76 aaPredicted RBP3.74□□□□□ -1.81
VPS53-213ENST00000572334 SPINK1P00995 79 aa3.73□□□□□ -1.81
VPS53-213ENST00000572334 Q8N9P0 234 aaPredicted RBP3.73□□□□□ -1.81
VPS53-213ENST00000572334 RPS29P62273 56 aaKnown RBP3.72□□□□□ -1.81
VPS53-213ENST00000572334 MOBPQ13875 183 aa3.72□□□□□ -1.81
VPS53-213ENST00000572334 LCE4AQ5TA78 99 aa3.72□□□□□ -1.81
VPS53-213ENST00000572334 A6NN06 94 aa3.71□□□□□ -1.82
VPS53-213ENST00000572334 Q6ZRX8 168 aa3.71□□□□□ -1.82
VPS53-213ENST00000572334 SSBP3-AS1Q7Z2R9 100 aa3.71□□□□□ -1.82
VPS53-213ENST00000572334 IGLV9-49A0A0B4J1Y8 123 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms