RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 FAM236DA0A1B0GTK5 79 aa6.64□□□□□ -1.35
CPSF6-204ENST00000547486 FAM236CP0DP71 79 aa6.64□□□□□ -1.35
CPSF6-204ENST00000547486 VPS25Q9BRG1 176 aa6.64□□□□□ -1.35
CPSF6-204ENST00000547486 UQCR10Q9UDW1 63 aa6.63□□□□□ -1.35
CPSF6-204ENST00000547486 A0A1B0GVX0 72 aa6.62□□□□□ -1.35
CPSF6-204ENST00000547486 SCGB1C2P0DMR2 95 aa6.62□□□□□ -1.35
CPSF6-204ENST00000547486 RBM3P98179 157 aaKnown RBP6.62□□□□□ -1.35
CPSF6-204ENST00000547486 RBM12B-AS1Q9P1G2 102 aa6.62□□□□□ -1.35
CPSF6-204ENST00000547486 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.61□□□□□ -1.35
CPSF6-204ENST00000547486 MT1FP04733 61 aa6.61□□□□□ -1.35
CPSF6-204ENST00000547486 C8orf87E5RJ46 101 aa6.6□□□□□ -1.35
CPSF6-204ENST00000547486 DSCR8Q96T75 97 aa6.6□□□□□ -1.35
CPSF6-204ENST00000547486 BAALC-AS2P0C853 105 aa6.59□□□□□ -1.35
CPSF6-204ENST00000547486 Q6ZQT0 140 aa6.57□□□□□ -1.36
CPSF6-204ENST00000547486 KRTAP9-3Q9BYQ3 159 aa6.57□□□□□ -1.36
CPSF6-204ENST00000547486 C9JAW5 83 aa6.56□□□□□ -1.36
CPSF6-204ENST00000547486 ZCCHC13Q8WW36 166 aaKnown RBP6.56□□□□□ -1.36
CPSF6-204ENST00000547486 TMA7Q9Y2S6 64 aaKnown RBP6.56□□□□□ -1.36
CPSF6-204ENST00000547486 J3KT08 172 aa6.55□□□□□ -1.36
CPSF6-204ENST00000547486 KRTAP10-10P60014 251 aa6.55□□□□□ -1.36
CPSF6-204ENST00000547486 SPINK7P58062 85 aa6.54□□□□□ -1.36
CPSF6-204ENST00000547486 Q8N9P0 234 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-204ENST00000547486 NAA38Q9BRA0 125 aaKnown RBP6.52□□□□□ -1.37
CPSF6-204ENST00000547486 FCGBPQ9Y6R7 5405 aaPredicted RBP6.51□□□□□ -1.37
CPSF6-204ENST00000547486 KRTAP9-7A8MTY7 169 aa6.51□□□□□ -1.37
CPSF6-204ENST00000547486 C21orf62-AS1Q17RA5 79 aa6.5□□□□□ -1.37
CPSF6-204ENST00000547486 KRTAP19-1Q8IUB9 90 aa6.5□□□□□ -1.37
CPSF6-204ENST00000547486 NDUFB1O75438 58 aa6.49□□□□□ -1.37
CPSF6-204ENST00000547486 MTURNQ8N3F0 131 aa6.49□□□□□ -1.37
CPSF6-204ENST00000547486 C8orf17Q9NRJ1 99 aa6.49□□□□□ -1.37
CPSF6-204ENST00000547486 LOC110117498A0A087WWA1 95 aa6.48□□□□□ -1.37
CPSF6-204ENST00000547486 IGKV3D-7A0A0C4DH55 119 aa6.48□□□□□ -1.37
CPSF6-204ENST00000547486 A8MWP4 228 aa6.48□□□□□ -1.37
CPSF6-204ENST00000547486 ATXN8Q156A1 80 aa6.48□□□□□ -1.37
CPSF6-204ENST00000547486 JMJD7-PLA2G4BH0Y9G9 81 aa6.47□□□□□ -1.37
CPSF6-204ENST00000547486 A0A1B0GW54 56 aa6.44□□□□□ -1.38
CPSF6-204ENST00000547486 C14orf132Q9NPU4 83 aa6.44□□□□□ -1.38
CPSF6-204ENST00000547486 M0R143 59 aa6.43□□□□□ -1.38
CPSF6-204ENST00000547486 LYRM7Q5U5X0 104 aa6.43□□□□□ -1.38
CPSF6-204ENST00000547486 Q6ZVQ6 151 aa6.43□□□□□ -1.38
CPSF6-204ENST00000547486 WFDC13Q8IUB5 93 aa6.43□□□□□ -1.38
CPSF6-204ENST00000547486 PDE6GP18545 87 aa6.42□□□□□ -1.38
CPSF6-204ENST00000547486 PRR15Q8IV56 129 aa6.42□□□□□ -1.38
CPSF6-204ENST00000547486 NREPQ16612 68 aa6.39□□□□□ -1.39
CPSF6-204ENST00000547486 MMP24-AS1A0A0U1RRL7 71 aa6.38□□□□□ -1.39
CPSF6-204ENST00000547486 TMEM254Q8TBM7 123 aa6.36□□□□□ -1.39
CPSF6-204ENST00000547486 MRPL34Q9BQ48 92 aaKnown RBP6.36□□□□□ -1.39
CPSF6-204ENST00000547486 LCE3BQ5TA77 95 aa6.35□□□□□ -1.39
CPSF6-204ENST00000547486 MACF1Q9UPN3 7388 aaKnown RBP6.34□□□□□ -1.39
CPSF6-204ENST00000547486 K7EQZ3 153 aa6.33□□□□□ -1.4
CPSF6-204ENST00000547486 KRTAP19-6Q3LI70 58 aa6.33□□□□□ -1.4
CPSF6-204ENST00000547486 hDV103S1A0JD37 113 aa6.32□□□□□ -1.4
CPSF6-204ENST00000547486 BATFQ16520 125 aa6.31□□□□□ -1.4
CPSF6-204ENST00000547486 H1FX-AS1Q4G0G2 97 aa6.31□□□□□ -1.4
CPSF6-204ENST00000547486 KRTAP4-12Q9BQ66 201 aa6.31□□□□□ -1.4
CPSF6-204ENST00000547486 SYNE2Q8WXH0 6885 aaKnown RBP6.3□□□□□ -1.4
CPSF6-204ENST00000547486 NDUFS5O43920 106 aa6.3□□□□□ -1.4
CPSF6-204ENST00000547486 SMIM6P0DI80 62 aa6.3□□□□□ -1.4
CPSF6-204ENST00000547486 Q5W150 140 aa6.3□□□□□ -1.4
CPSF6-204ENST00000547486 C9orf118A6NHY6 69 aa6.27□□□□□ -1.41
CPSF6-204ENST00000547486 H3BT86 120 aa6.27□□□□□ -1.41
CPSF6-204ENST00000547486 IGKV2D-30A0A075B6S6 120 aa6.26□□□□□ -1.41
CPSF6-204ENST00000547486 BPY2O14599 106 aa6.26□□□□□ -1.41
CPSF6-204ENST00000547486 TAX1BP3O14907 124 aa6.26□□□□□ -1.41
CPSF6-204ENST00000547486 IGKV2-30P06310 120 aa6.26□□□□□ -1.41
CPSF6-204ENST00000547486 KRTAP9-9Q9BYP9 154 aa6.26□□□□□ -1.41
CPSF6-204ENST00000547486 KRTAP9-4Q9BYQ2 154 aa6.26□□□□□ -1.41
CPSF6-204ENST00000547486 A0A1W2PPM0 123 aa6.24□□□□□ -1.41
CPSF6-204ENST00000547486 TSTD3H0UI37 97 aa6.24□□□□□ -1.41
CPSF6-204ENST00000547486 Q8N9L7 120 aa6.24□□□□□ -1.41
CPSF6-204ENST00000547486 LINC00846Q9NV44 126 aa6.24□□□□□ -1.41
CPSF6-204ENST00000547486 C7orf65Q6ZTY9 151 aa6.21□□□□□ -1.42
CPSF6-204ENST00000547486 KRTAP4-8A0A0G2JLE6 195 aa6.2□□□□□ -1.42
CPSF6-204ENST00000547486 CASC2Q6XLA1 102 aa6.2□□□□□ -1.42
CPSF6-204ENST00000547486 HCG22E2RYF7 251 aa6.19□□□□□ -1.42
CPSF6-204ENST00000547486 C4orf26Q17RF5 130 aa6.19□□□□□ -1.42
CPSF6-204ENST00000547486 LOC105371267A0A1B0GV96 52 aa6.15□□□□□ -1.42
CPSF6-204ENST00000547486 KRTAP3-1Q9BYR8 98 aa6.14□□□□□ -1.43
CPSF6-204ENST00000547486 SPCS1Q9Y6A9 102 aa6.14□□□□□ -1.43
CPSF6-204ENST00000547486 CXCL6P80162 114 aa6.13□□□□□ -1.43
CPSF6-204ENST00000547486 C5orf47Q569G3 176 aa6.11□□□□□ -1.43
CPSF6-204ENST00000547486 KRTAP6-3Q3LI67 103 aa6.1□□□□□ -1.43
CPSF6-204ENST00000547486 PRO0461Q9UI25 63 aa6.09□□□□□ -1.43
CPSF6-204ENST00000547486 UBL5Q9BZL1 73 aa6.06□□□□□ -1.44
CPSF6-204ENST00000547486 C1orf64Q8NEQ6 169 aa6.04□□□□□ -1.44
CPSF6-204ENST00000547486 S4R3F8 94 aa6.04□□□□□ -1.44
CPSF6-204ENST00000547486 MT1BP07438 61 aa6.03□□□□□ -1.44
CPSF6-204ENST00000547486 LCA10Q71F78 164 aa6.03□□□□□ -1.44
CPSF6-204ENST00000547486 FAM236AA0A1B0GUQ0 79 aa6.02□□□□□ -1.45
CPSF6-204ENST00000547486 FAM236BA0A1B0GV22 79 aa6.02□□□□□ -1.45
CPSF6-204ENST00000547486 K7EP34 96 aa6.01□□□□□ -1.45
CPSF6-204ENST00000547486 COL5A1-AS1Q5SY13 56 aa6.01□□□□□ -1.45
CPSF6-204ENST00000547486 CSAG1Q6PB30 78 aa6.01□□□□□ -1.45
CPSF6-204ENST00000547486 SPRR2GQ9BYE4 73 aa6□□□□□ -1.45
CPSF6-204ENST00000547486 KRTAP19-8Q3LI54 63 aa5.99□□□□□ -1.45
CPSF6-204ENST00000547486 KRTAP4-7Q9BYR0 210 aa5.99□□□□□ -1.45
CPSF6-204ENST00000547486 A6NN06 94 aa5.97□□□□□ -1.45
CPSF6-204ENST00000547486 Q5VV11 94 aa5.97□□□□□ -1.45
CPSF6-204ENST00000547486 TP53AIP1Q9HCN2 124 aa5.97□□□□□ -1.45
CPSF6-204ENST00000547486 LCE1DQ5T752 114 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms