RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488		Q6ZRX8	168 aa		-0.05	□□□□□ -2.42
PRKDC-210	ENST00000541488	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	-0.05	□□□□□ -2.42
PRKDC-210	ENST00000541488	LZIC	Q8WZA0	190 aa		-0.05	□□□□□ -2.42
PRKDC-210	ENST00000541488	ARHGAP5-AS1	Q96IT6	56 aa		-0.05	□□□□□ -2.42
PRKDC-210	ENST00000541488	NDUFA4L2	Q9NRX3	87 aa		-0.05	□□□□□ -2.42
PRKDC-210	ENST00000541488	TRBV6-1	A0A0K0K1D8	114 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488		M0R3E3	92 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	CKS1B	P61024	79 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	SNRPG	P62308	76 aa	Known RBP	-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	LINC01590	Q5TEZ4	76 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	MIC13	Q5XKP0	118 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	C5orf38	Q86SI9	138 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	CTAGE3P	Q8IX95	158 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	TPT1P8	Q9HAU6	139 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	BATF3	Q9NR55	127 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488		S4R3F8	94 aa		-0.06	□□□□□ -2.42
PRKDC-210	ENST00000541488	TRAV30	A0A087WSZ9	112 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488		F6UZH7	168 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488		M0QZ58	72 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488	GCHFR	P30047	84 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488	S100A10	P60903	97 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488	RPL7L1	Q6DKI1	246 aa	Known RBP	-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488	PP6455	Q8WZ26	134 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488	MAFIP	Q8WZ33	124 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488		R4GMQ9	66 aa		-0.07	□□□□□ -2.42
PRKDC-210	ENST00000541488		K7EQZ3	153 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	CORT	O00230	105 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	S100A3	P33764	101 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	SNCA	P37840	140 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488		Q6ZUT4	128 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	S100A13	Q99584	98 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	PSMG3	Q9BT73	122 aa	Predicted RBP	-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	SMIM3	Q9BZL3	60 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488	AGPAT4-IT1	Q9H0P7	198 aa		-0.08	□□□□□ -2.42
PRKDC-210	ENST00000541488		H3BVH4	76 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	ARPC5	O15511	151 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	SNAPC5	O75971	98 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	RRAS2	P62070	204 aa	Predicted RBP	-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488		Q6AWC8	147 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	ZNF818P	Q6ZRF7	136 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	PPP3R2	Q96LZ3	170 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	COPZ2	Q9P299	210 aa		-0.09	□□□□□ -2.42
PRKDC-210	ENST00000541488	ETDC	A0A1B0GVM5	59 aa		-0.1	□□□□□ -2.43
PRKDC-210	ENST00000541488	LINC01546	A6NGU7	62 aa		-0.1	□□□□□ -2.43
PRKDC-210	ENST00000541488	SNRPGP15	A8MWD9	76 aa		-0.1	□□□□□ -2.43
PRKDC-210	ENST00000541488		D6R8Y8	96 aa		-0.1	□□□□□ -2.43
PRKDC-210	ENST00000541488		H3BQ15	152 aa		-0.1	□□□□□ -2.43
PRKDC-210	ENST00000541488	AMELX	Q99217	191 aa		-0.1	□□□□□ -2.43
PRKDC-210	ENST00000541488	TRAV21	A0A0B4J279	112 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	TRBV10-3	A0A0K0K1G6	114 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488		K7ERU9	68 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488		M0R129	80 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	NDUFB6	O95139	128 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	IL5	P05113	134 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	SPINK8	P0C7L1	97 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	SMIM6	P0DI80	62 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	IGLC2	P0DOY2	106 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	FGF7	P21781	194 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	UBE2G1	P62253	170 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	CATR1	Q13166	79 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	PDCD10	Q9BUL8	212 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	CNFN	Q9BYD5	112 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	PRO1933	Q9H354	126 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	LINC00472	Q9H8W2	130 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	TOMM7	Q9P0U1	55 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488	GNG8	Q9UK08	70 aa		-0.11	□□□□□ -2.43
PRKDC-210	ENST00000541488		A0A087WVE0	104 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	TRAV1-2	A0A0B4J238	106 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	ZNF815P	A8K554	130 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	IFNG	P01579	166 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	MGP	P08493	103 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	IAPP	P10997	89 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	IFITM1	P13164	125 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	ALKAL2	Q6UX46	152 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	TSC22D3	Q99576	134 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	TRGV9	Q99603	122 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	CYP4F30P	Q9H0H9	118 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	CMC2	Q9NRP2	79 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488	ARL2-SNX15	V9GYD0	113 aa		-0.12	□□□□□ -2.43
PRKDC-210	ENST00000541488		K7EP34	96 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	MT-ATP8	P03928	68 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	ARMS2	P0C7Q2	107 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	SPRR1A	P35321	89 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	PPP3R1	P63098	170 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	BAGE3	Q86Y29	109 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	KCNRG	Q8N5I3	272 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	DEFB105A	Q8NG35	78 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	ANP32B	Q92688	251 aa	Known RBP	-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	TMEM191A	Q9H0A3	160 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	CDC42SE2	Q9NRR3	84 aa		-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	PAIP2B	Q9ULR5	123 aa	Known RBP	-0.13	□□□□□ -2.43
PRKDC-210	ENST00000541488	IGLV5-48	A0A075B6I7	105 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	TRBV7-7	A0A0K0K1E9	115 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	LOC100130705	A0A1B0GUX0	176 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	CEBPZOS	A8MTT3	80 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488		H3BQF6	201 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	SNCG	O76070	127 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	CFD	P00746	253 aa	Predicted RBP	-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	CRIP1	P50238	77 aa		-0.14	□□□□□ -2.43
PRKDC-210	ENST00000541488	RPS25	P62851	125 aa	Known RBP	-0.14	□□□□□ -2.43

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms