RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 PDE6GP18545 87 aa9.54□□□□□ -0.88
SNRPA1-203ENST00000540017 C21orf62-AS1Q17RA5 79 aa9.54□□□□□ -0.88
SNRPA1-203ENST00000540017 H3BT86 120 aa9.53□□□□□ -0.88
SNRPA1-203ENST00000540017 A0A1B0GVX0 72 aa9.52□□□□□ -0.89
SNRPA1-203ENST00000540017 A0A1B0GW54 56 aa9.51□□□□□ -0.89
SNRPA1-203ENST00000540017 MT1HP80294 61 aa9.51□□□□□ -0.89
SNRPA1-203ENST00000540017 SPCS1Q9Y6A9 102 aa9.5□□□□□ -0.89
SNRPA1-203ENST00000540017 J3KT08 172 aa9.49□□□□□ -0.89
SNRPA1-203ENST00000540017 COL5A1-AS1Q5SY13 56 aa9.49□□□□□ -0.89
SNRPA1-203ENST00000540017 C8orf87E5RJ46 101 aa9.46□□□□□ -0.9
SNRPA1-203ENST00000540017 SMCPP49901 116 aaPredicted RBP9.46□□□□□ -0.9
SNRPA1-203ENST00000540017 COX6B2Q6YFQ2 88 aa9.43□□□□□ -0.9
SNRPA1-203ENST00000540017 IGKV3D-7A0A0C4DH55 119 aa9.41□□□□□ -0.9
SNRPA1-203ENST00000540017 PCP4L1A6NKN8 68 aa9.41□□□□□ -0.9
SNRPA1-203ENST00000540017 A8MWP4 228 aa9.41□□□□□ -0.9
SNRPA1-203ENST00000540017 NREPQ16612 68 aa9.41□□□□□ -0.9
SNRPA1-203ENST00000540017 NDUFB1O75438 58 aa9.4□□□□□ -0.9
SNRPA1-203ENST00000540017 FLGP20930 4061 aaPredicted RBP9.4□□□□□ -0.9
SNRPA1-203ENST00000540017 KRTAP9-2Q9BYQ4 174 aa9.39□□□□□ -0.91
SNRPA1-203ENST00000540017 PRO0461Q9UI25 63 aa9.39□□□□□ -0.91
SNRPA1-203ENST00000540017 K7EP34 96 aa9.38□□□□□ -0.91
SNRPA1-203ENST00000540017 C8orf17Q9NRJ1 99 aa9.38□□□□□ -0.91
SNRPA1-203ENST00000540017 PRR15Q8IV56 129 aa9.34□□□□□ -0.91
SNRPA1-203ENST00000540017 Q8N9P0 234 aaPredicted RBP9.33□□□□□ -0.92
SNRPA1-203ENST00000540017 KRTAP10-6P60371 365 aaPredicted RBP9.3□□□□□ -0.92
SNRPA1-203ENST00000540017 ZCCHC13Q8WW36 166 aaKnown RBP9.3□□□□□ -0.92
SNRPA1-203ENST00000540017 K7EQZ3 153 aa9.29□□□□□ -0.92
SNRPA1-203ENST00000540017 LORP23490 312 aaPredicted RBP9.29□□□□□ -0.92
SNRPA1-203ENST00000540017 Q6ZVQ6 151 aa9.29□□□□□ -0.92
SNRPA1-203ENST00000540017 MMP24-AS1A0A0U1RRL7 71 aa9.28□□□□□ -0.92
SNRPA1-203ENST00000540017 M0R2T5 61 aa9.28□□□□□ -0.92
SNRPA1-203ENST00000540017 HRES1P13985 223 aa9.28□□□□□ -0.92
SNRPA1-203ENST00000540017 BPY2O14599 106 aa9.25□□□□□ -0.93
SNRPA1-203ENST00000540017 GTF2H5Q6ZYL4 71 aa9.25□□□□□ -0.93
SNRPA1-203ENST00000540017 MPLKIPQ8TAP9 179 aa9.25□□□□□ -0.93
SNRPA1-203ENST00000540017 TMEM254Q8TBM7 123 aa9.22□□□□□ -0.93
SNRPA1-203ENST00000540017 MRPL34Q9BQ48 92 aaKnown RBP9.22□□□□□ -0.93
SNRPA1-203ENST00000540017 LINC00846Q9NV44 126 aa9.22□□□□□ -0.93
SNRPA1-203ENST00000540017 Q8N9L7 120 aa9.21□□□□□ -0.94
SNRPA1-203ENST00000540017 hDV103S1A0JD37 113 aa9.2□□□□□ -0.94
SNRPA1-203ENST00000540017 LCE2DQ5TA82 110 aaPredicted RBP9.2□□□□□ -0.94
SNRPA1-203ENST00000540017 SPINK7P58062 85 aa9.19□□□□□ -0.94
SNRPA1-203ENST00000540017 F8W1H4 67 aa9.18□□□□□ -0.94
SNRPA1-203ENST00000540017 FAM236DA0A1B0GTK5 79 aa9.16□□□□□ -0.94
SNRPA1-203ENST00000540017 FAM236CP0DP71 79 aa9.16□□□□□ -0.94
SNRPA1-203ENST00000540017 ETDBQ3ZM63 59 aa9.16□□□□□ -0.94
SNRPA1-203ENST00000540017 RBM12B-AS1Q9P1G2 102 aa9.16□□□□□ -0.94
SNRPA1-203ENST00000540017 UBL5Q9BZL1 73 aa9.14□□□□□ -0.95
SNRPA1-203ENST00000540017 WFDC13Q8IUB5 93 aa9.12□□□□□ -0.95
SNRPA1-203ENST00000540017 NDUFS5O43920 106 aa9.11□□□□□ -0.95
SNRPA1-203ENST00000540017 CASC2Q6XLA1 102 aa9.09□□□□□ -0.95
SNRPA1-203ENST00000540017 Q5W150 140 aa9.07□□□□□ -0.96
SNRPA1-203ENST00000540017 KRTAP9-8Q9BYQ0 159 aa9.04□□□□□ -0.96
SNRPA1-203ENST00000540017 HCG22E2RYF7 251 aa9.03□□□□□ -0.96
SNRPA1-203ENST00000540017 KRTAP9-6A0A140TA67 174 aa9□□□□□ -0.97
SNRPA1-203ENST00000540017 CXCL6P80162 114 aa8.97□□□□□ -0.97
SNRPA1-203ENST00000540017 IGKV2D-30A0A075B6S6 120 aa8.96□□□□□ -0.98
SNRPA1-203ENST00000540017 IGKV2-30P06310 120 aa8.96□□□□□ -0.98
SNRPA1-203ENST00000540017 FSIP2Q5CZC0 6907 aa8.94□□□□□ -0.98
SNRPA1-203ENST00000540017 A0A1B0GV90 55 aa8.92□□□□□ -0.98
SNRPA1-203ENST00000540017 MT2AP02795 61 aa8.92□□□□□ -0.98
SNRPA1-203ENST00000540017 C7orf65Q6ZTY9 151 aa8.92□□□□□ -0.98
SNRPA1-203ENST00000540017 ACYP1P07311 99 aa8.89□□□□□ -0.99
SNRPA1-203ENST00000540017 CRCT1Q9UGL9 99 aa8.89□□□□□ -0.99
SNRPA1-203ENST00000540017 FAM240AA0A1B0GVK7 77 aa8.87□□□□□ -0.99
SNRPA1-203ENST00000540017 MT1FP04733 61 aa8.86□□□□□ -0.99
SNRPA1-203ENST00000540017 H1FX-AS1Q4G0G2 97 aa8.84□□□□□ -0.99
SNRPA1-203ENST00000540017 C4orf26Q17RF5 130 aa8.81□□□□□ -1
SNRPA1-203ENST00000540017 TP53AIP1Q9HCN2 124 aa8.81□□□□□ -1
SNRPA1-203ENST00000540017 KRTAP10-10P60014 251 aa8.78□□□□□ -1
SNRPA1-203ENST00000540017 ATP5EP2Q5VTU8 51 aa8.77□□□□□ -1.01
SNRPA1-203ENST00000540017 KRTAP9-3Q9BYQ3 159 aa8.75□□□□□ -1.01
SNRPA1-203ENST00000540017 HIST1H4AP62805 103 aaKnown RBP8.74□□□□□ -1.01
SNRPA1-203ENST00000540017 KRTAP3-1Q9BYR8 98 aa8.73□□□□□ -1.01
SNRPA1-203ENST00000540017 LINC00643Q86TS7 51 aa8.71□□□□□ -1.02
SNRPA1-203ENST00000540017 USH2AO75445 5202 aa8.7□□□□□ -1.02
SNRPA1-203ENST00000540017 LCE2BO14633 110 aa8.69□□□□□ -1.02
SNRPA1-203ENST00000540017 A0A087WVE0 104 aa8.68□□□□□ -1.02
SNRPA1-203ENST00000540017 TRAV22A0A0B4J277 110 aa8.66□□□□□ -1.02
SNRPA1-203ENST00000540017 C1orf64Q8NEQ6 169 aa8.65□□□□□ -1.02
SNRPA1-203ENST00000540017 CYP4F30PQ9H0H9 118 aa8.65□□□□□ -1.02
SNRPA1-203ENST00000540017 SSPOA2VEC9 5147 aa8.6□□□□□ -1.03
SNRPA1-203ENST00000540017 UQCRQO14949 82 aa8.6□□□□□ -1.03
SNRPA1-203ENST00000540017 LOC101927531A0A1B0GV80 90 aa8.58□□□□□ -1.04
SNRPA1-203ENST00000540017 C5orf47Q569G3 176 aa8.57□□□□□ -1.04
SNRPA1-203ENST00000540017 H0Y9P7 68 aa8.56□□□□□ -1.04
SNRPA1-203ENST00000540017 S4R3F8 94 aa8.56□□□□□ -1.04
SNRPA1-203ENST00000540017 J3QR89 54 aa8.55□□□□□ -1.04
SNRPA1-203ENST00000540017 LCA10Q71F78 164 aa8.54□□□□□ -1.04
SNRPA1-203ENST00000540017 ATOX1O00244 68 aa8.5□□□□□ -1.05
SNRPA1-203ENST00000540017 OCR1Q9BZK8 76 aa8.5□□□□□ -1.05
SNRPA1-203ENST00000540017 KRTAP3-3Q9BYR6 98 aa8.47□□□□□ -1.05
SNRPA1-203ENST00000540017 CSAG1Q6PB30 78 aa8.46□□□□□ -1.06
SNRPA1-203ENST00000540017 KRTAP19-1Q8IUB9 90 aa8.44□□□□□ -1.06
SNRPA1-203ENST00000540017 LINC00208Q96KT6 92 aa8.44□□□□□ -1.06
SNRPA1-203ENST00000540017 KLKP1Q107X0 134 aa8.42□□□□□ -1.06
SNRPA1-203ENST00000540017 FCGBPQ9Y6R7 5405 aaPredicted RBP8.37□□□□□ -1.07
SNRPA1-203ENST00000540017 MP68P56378 58 aa8.37□□□□□ -1.07
SNRPA1-203ENST00000540017 FAM236AA0A1B0GUQ0 79 aa8.36□□□□□ -1.07
SNRPA1-203ENST00000540017 FAM236BA0A1B0GV22 79 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms