RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 DSCR8Q96T75 97 aa8.5□□□□□ -1.05
RPAIN-206ENST00000539417 C21orf62-AS1Q17RA5 79 aa8.49□□□□□ -1.05
RPAIN-206ENST00000539417 LINC00643Q86TS7 51 aa8.49□□□□□ -1.05
RPAIN-206ENST00000539417 PDE6GP18545 87 aa8.48□□□□□ -1.05
RPAIN-206ENST00000539417 DEFB116Q30KQ4 102 aa8.48□□□□□ -1.05
RPAIN-206ENST00000539417 PCOTHQ58A44 107 aa8.47□□□□□ -1.05
RPAIN-206ENST00000539417 LOC110117498A0A087WWA1 95 aa8.46□□□□□ -1.05
RPAIN-206ENST00000539417 Q6ZQT0 140 aa8.46□□□□□ -1.05
RPAIN-206ENST00000539417 LINC00472Q9H8W2 130 aa8.45□□□□□ -1.06
RPAIN-206ENST00000539417 IMUPQ9GZP8 106 aa8.45□□□□□ -1.06
RPAIN-206ENST00000539417 RPL37P61927 97 aaKnown RBP8.44□□□□□ -1.06
RPAIN-206ENST00000539417 IGKV4-1P06312 121 aa8.43□□□□□ -1.06
RPAIN-206ENST00000539417 DSCR10P59022 87 aa8.41□□□□□ -1.06
RPAIN-206ENST00000539417 LINC00846Q9NV44 126 aa8.41□□□□□ -1.06
RPAIN-206ENST00000539417 NOTCH2NLQ7Z3S9 236 aa8.39□□□□□ -1.07
RPAIN-206ENST00000539417 ATP5EP2Q5VTU8 51 aa8.37□□□□□ -1.07
RPAIN-206ENST00000539417 UBL5Q9BZL1 73 aa8.37□□□□□ -1.07
RPAIN-206ENST00000539417 Q75L30 129 aa8.34□□□□□ -1.07
RPAIN-206ENST00000539417 KRTAP16-1A8MUX0 517 aa8.33□□□□□ -1.08
RPAIN-206ENST00000539417 C20orf166-AS1Q96NR2 134 aa8.32□□□□□ -1.08
RPAIN-206ENST00000539417 IGHV6-1A0A0B4J1U7 121 aa8.32□□□□□ -1.08
RPAIN-206ENST00000539417 ANAPC13Q9BS18 74 aa8.32□□□□□ -1.08
RPAIN-206ENST00000539417 A8MUU9 505 aa8.31□□□□□ -1.08
RPAIN-206ENST00000539417 LINC00313P59037 77 aa8.31□□□□□ -1.08
RPAIN-206ENST00000539417 A0A0U1RQV1 116 aa8.3□□□□□ -1.08
RPAIN-206ENST00000539417 A0A1B0GW54 56 aa8.3□□□□□ -1.08
RPAIN-206ENST00000539417 KRTAP19-2Q3LHN2 52 aa8.3□□□□□ -1.08
RPAIN-206ENST00000539417 IGKV3D-7A0A0C4DH55 119 aa8.29□□□□□ -1.08
RPAIN-206ENST00000539417 A0A1B0GVX0 72 aa8.29□□□□□ -1.08
RPAIN-206ENST00000539417 LCE2AQ5TA79 106 aaPredicted RBP8.29□□□□□ -1.08
RPAIN-206ENST00000539417 FAM236AA0A1B0GUQ0 79 aa8.26□□□□□ -1.09
RPAIN-206ENST00000539417 FAM236BA0A1B0GV22 79 aa8.26□□□□□ -1.09
RPAIN-206ENST00000539417 LCE2CQ5TA81 110 aa8.26□□□□□ -1.09
RPAIN-206ENST00000539417 Q6ZVQ6 151 aa8.26□□□□□ -1.09
RPAIN-206ENST00000539417 J3KT08 172 aa8.26□□□□□ -1.09
RPAIN-206ENST00000539417 ATP11AUNQ6ZP68 121 aa8.26□□□□□ -1.09
RPAIN-206ENST00000539417 CXCL6P80162 114 aa8.24□□□□□ -1.09
RPAIN-206ENST00000539417 NREPQ16612 68 aa8.24□□□□□ -1.09
RPAIN-206ENST00000539417 HIST1H4AP62805 103 aaKnown RBP8.22□□□□□ -1.09
RPAIN-206ENST00000539417 A8MWP4 228 aa8.21□□□□□ -1.09
RPAIN-206ENST00000539417 C8orf87E5RJ46 101 aa8.21□□□□□ -1.09
RPAIN-206ENST00000539417 ATOX1O00244 68 aa8.2□□□□□ -1.1
RPAIN-206ENST00000539417 LCE2BO14633 110 aa8.2□□□□□ -1.1
RPAIN-206ENST00000539417 NDUFB1O75438 58 aa8.18□□□□□ -1.1
RPAIN-206ENST00000539417 C8orf17Q9NRJ1 99 aa8.18□□□□□ -1.1
RPAIN-206ENST00000539417 LOC100996750A0A140TA64 210 aa8.17□□□□□ -1.1
RPAIN-206ENST00000539417 KRTAP4-6Q9BYQ5 205 aa8.17□□□□□ -1.1
RPAIN-206ENST00000539417 A0A087WVE0 104 aa8.16□□□□□ -1.1
RPAIN-206ENST00000539417 PRR15Q8IV56 129 aa8.16□□□□□ -1.1
RPAIN-206ENST00000539417 K7EQZ3 153 aa8.15□□□□□ -1.1
RPAIN-206ENST00000539417 MMP24-AS1A0A0U1RRL7 71 aa8.13□□□□□ -1.11
RPAIN-206ENST00000539417 FLGP20930 4061 aaPredicted RBP8.12□□□□□ -1.11
RPAIN-206ENST00000539417 BPY2O14599 106 aa8.12□□□□□ -1.11
RPAIN-206ENST00000539417 Q8N9P0 234 aaPredicted RBP8.12□□□□□ -1.11
RPAIN-206ENST00000539417 MT1HP80294 61 aa8.11□□□□□ -1.11
RPAIN-206ENST00000539417 Q8N9L7 120 aa8.11□□□□□ -1.11
RPAIN-206ENST00000539417 CCDC179H3BU77 68 aa8.1□□□□□ -1.11
RPAIN-206ENST00000539417 UQCRQO14949 82 aa8.1□□□□□ -1.11
RPAIN-206ENST00000539417 COX7CP15954 63 aa8.09□□□□□ -1.11
RPAIN-206ENST00000539417 SMIM20Q8N5G0 67 aa8.08□□□□□ -1.12
RPAIN-206ENST00000539417 SERP2Q8N6R1 65 aa8.08□□□□□ -1.12
RPAIN-206ENST00000539417 ZCCHC13Q8WW36 166 aaKnown RBP8.06□□□□□ -1.12
RPAIN-206ENST00000539417 COX6B2Q6YFQ2 88 aa8.04□□□□□ -1.12
RPAIN-206ENST00000539417 TMEM254Q8TBM7 123 aa8.04□□□□□ -1.12
RPAIN-206ENST00000539417 hDV103S1A0JD37 113 aa8.03□□□□□ -1.12
RPAIN-206ENST00000539417 MRPL34Q9BQ48 92 aaKnown RBP8.03□□□□□ -1.12
RPAIN-206ENST00000539417 TRAV7A0A075B6U4 112 aa8.01□□□□□ -1.13
RPAIN-206ENST00000539417 HRES1P13985 223 aa8.01□□□□□ -1.13
RPAIN-206ENST00000539417 WFDC13Q8IUB5 93 aa8□□□□□ -1.13
RPAIN-206ENST00000539417 MPLKIPQ8TAP9 179 aa7.97□□□□□ -1.13
RPAIN-206ENST00000539417 CASC2Q6XLA1 102 aa7.96□□□□□ -1.13
RPAIN-206ENST00000539417 NDUFS5O43920 106 aa7.95□□□□□ -1.14
RPAIN-206ENST00000539417 SPINK7P58062 85 aa7.95□□□□□ -1.14
RPAIN-206ENST00000539417 Q5W150 140 aa7.94□□□□□ -1.14
RPAIN-206ENST00000539417 KRTAP10-6P60371 365 aaPredicted RBP7.91□□□□□ -1.14
RPAIN-206ENST00000539417 HCG22E2RYF7 251 aa7.9□□□□□ -1.14
RPAIN-206ENST00000539417 M0R2T5 61 aa7.9□□□□□ -1.14
RPAIN-206ENST00000539417 LORP23490 312 aaPredicted RBP7.89□□□□□ -1.15
RPAIN-206ENST00000539417 OCR1Q9BZK8 76 aa7.88□□□□□ -1.15
RPAIN-206ENST00000539417 C20orf197Q8N268 126 aa7.87□□□□□ -1.15
RPAIN-206ENST00000539417 FAM236DA0A1B0GTK5 79 aa7.86□□□□□ -1.15
RPAIN-206ENST00000539417 FAM236CP0DP71 79 aa7.86□□□□□ -1.15
RPAIN-206ENST00000539417 KLKP1Q107X0 134 aa7.86□□□□□ -1.15
RPAIN-206ENST00000539417 KRTAP9-2Q9BYQ4 174 aa7.86□□□□□ -1.15
RPAIN-206ENST00000539417 RBM12B-AS1Q9P1G2 102 aa7.86□□□□□ -1.15
RPAIN-206ENST00000539417 TMEM258P61165 79 aa7.84□□□□□ -1.15
RPAIN-206ENST00000539417 NDUFC1O43677 76 aa7.82□□□□□ -1.16
RPAIN-206ENST00000539417 CYSTM1Q9H1C7 97 aa7.81□□□□□ -1.16
RPAIN-206ENST00000539417 IGKV2D-30A0A075B6S6 120 aa7.8□□□□□ -1.16
RPAIN-206ENST00000539417 IGKV2-30P06310 120 aa7.8□□□□□ -1.16
RPAIN-206ENST00000539417 C5orf47Q569G3 176 aa7.78□□□□□ -1.16
RPAIN-206ENST00000539417 SNURFQ9Y675 71 aa7.76□□□□□ -1.17
RPAIN-206ENST00000539417 H7BZZ5 65 aa7.75□□□□□ -1.17
RPAIN-206ENST00000539417 C7orf65Q6ZTY9 151 aa7.75□□□□□ -1.17
RPAIN-206ENST00000539417 KRTAP9-8Q9BYQ0 159 aa7.73□□□□□ -1.17
RPAIN-206ENST00000539417 MP68P56378 58 aa7.71□□□□□ -1.18
RPAIN-206ENST00000539417 ATP5EP56381 51 aaPredicted RBP7.7□□□□□ -1.18
RPAIN-206ENST00000539417 RPS28P62857 69 aaKnown RBP7.7□□□□□ -1.18
RPAIN-206ENST00000539417 H3BPC8 53 aa7.69□□□□□ -1.18
RPAIN-206ENST00000539417 TP53AIP1Q9HCN2 124 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms