RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 C8orf87E5RJ46 101 aa8.37□□□□□ -1.07
CPSF1-207ENST00000531727 VPS25Q9BRG1 176 aa8.36□□□□□ -1.07
CPSF1-207ENST00000531727 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.34□□□□□ -1.07
CPSF1-207ENST00000531727 RBM3P98179 157 aaKnown RBP8.34□□□□□ -1.07
CPSF1-207ENST00000531727 SSPOA2VEC9 5147 aa8.33□□□□□ -1.08
CPSF1-207ENST00000531727 MT1FP04733 61 aa8.33□□□□□ -1.08
CPSF1-207ENST00000531727 DSCR8Q96T75 97 aa8.33□□□□□ -1.08
CPSF1-207ENST00000531727 BATFQ16520 125 aa8.32□□□□□ -1.08
CPSF1-207ENST00000531727 M0R143 59 aa8.31□□□□□ -1.08
CPSF1-207ENST00000531727 SCGB1C2P0DMR2 95 aa8.31□□□□□ -1.08
CPSF1-207ENST00000531727 NAA38Q9BRA0 125 aaKnown RBP8.3□□□□□ -1.08
CPSF1-207ENST00000531727 J3KT08 172 aa8.29□□□□□ -1.08
CPSF1-207ENST00000531727 C21orf62-AS1Q17RA5 79 aa8.29□□□□□ -1.08
CPSF1-207ENST00000531727 ZCCHC13Q8WW36 166 aaKnown RBP8.29□□□□□ -1.08
CPSF1-207ENST00000531727 PCP4L1A6NKN8 68 aa8.28□□□□□ -1.08
CPSF1-207ENST00000531727 KRTAP9-7A8MTY7 169 aa8.28□□□□□ -1.08
CPSF1-207ENST00000531727 KRTAP10-10P60014 251 aa8.28□□□□□ -1.08
CPSF1-207ENST00000531727 MTURNQ8N3F0 131 aa8.28□□□□□ -1.08
CPSF1-207ENST00000531727 C9JAW5 83 aa8.27□□□□□ -1.09
CPSF1-207ENST00000531727 LCE2BO14633 110 aa8.27□□□□□ -1.09
CPSF1-207ENST00000531727 BAALC-AS2P0C853 105 aa8.26□□□□□ -1.09
CPSF1-207ENST00000531727 KRTAP9-3Q9BYQ3 159 aa8.26□□□□□ -1.09
CPSF1-207ENST00000531727 Q6ZQT0 140 aa8.25□□□□□ -1.09
CPSF1-207ENST00000531727 SPINK7P58062 85 aa8.24□□□□□ -1.09
CPSF1-207ENST00000531727 FCGBPQ9Y6R7 5405 aaPredicted RBP8.24□□□□□ -1.09
CPSF1-207ENST00000531727 Q8N9P0 234 aaPredicted RBP8.23□□□□□ -1.09
CPSF1-207ENST00000531727 NDUFB1O75438 58 aa8.22□□□□□ -1.09
CPSF1-207ENST00000531727 KRTAP19-1Q8IUB9 90 aa8.21□□□□□ -1.1
CPSF1-207ENST00000531727 TAX1BP3O14907 124 aa8.2□□□□□ -1.1
CPSF1-207ENST00000531727 A8MWP4 228 aa8.18□□□□□ -1.1
CPSF1-207ENST00000531727 C8orf17Q9NRJ1 99 aa8.18□□□□□ -1.1
CPSF1-207ENST00000531727 A0A1B0GW54 56 aa8.17□□□□□ -1.1
CPSF1-207ENST00000531727 JMJD7-PLA2G4BH0Y9G9 81 aa8.17□□□□□ -1.1
CPSF1-207ENST00000531727 LOC110117498A0A087WWA1 95 aa8.16□□□□□ -1.1
CPSF1-207ENST00000531727 ATXN8Q156A1 80 aa8.16□□□□□ -1.1
CPSF1-207ENST00000531727 LYRM7Q5U5X0 104 aa8.15□□□□□ -1.1
CPSF1-207ENST00000531727 IGKV3D-7A0A0C4DH55 119 aa8.14□□□□□ -1.11
CPSF1-207ENST00000531727 C9orf118A6NHY6 69 aa8.14□□□□□ -1.11
CPSF1-207ENST00000531727 WFDC13Q8IUB5 93 aa8.14□□□□□ -1.11
CPSF1-207ENST00000531727 PDE6GP18545 87 aa8.12□□□□□ -1.11
CPSF1-207ENST00000531727 Q6ZVQ6 151 aa8.11□□□□□ -1.11
CPSF1-207ENST00000531727 COL5A1-AS1Q5SY13 56 aa8.1□□□□□ -1.11
CPSF1-207ENST00000531727 C14orf132Q9NPU4 83 aa8.09□□□□□ -1.11
CPSF1-207ENST00000531727 A0A1W2PPM0 123 aa8.08□□□□□ -1.12
CPSF1-207ENST00000531727 PRR15Q8IV56 129 aa8.08□□□□□ -1.12
CPSF1-207ENST00000531727 NREPQ16612 68 aa8.05□□□□□ -1.12
CPSF1-207ENST00000531727 MMP24-AS1A0A0U1RRL7 71 aa8.04□□□□□ -1.12
CPSF1-207ENST00000531727 TMEM254Q8TBM7 123 aa8.04□□□□□ -1.12
CPSF1-207ENST00000531727 MRPL34Q9BQ48 92 aaKnown RBP8.03□□□□□ -1.12
CPSF1-207ENST00000531727 LINC00846Q9NV44 126 aa8.03□□□□□ -1.12
CPSF1-207ENST00000531727 KRTAP19-6Q3LI70 58 aa8.02□□□□□ -1.13
CPSF1-207ENST00000531727 SPCS1Q9Y6A9 102 aa8□□□□□ -1.13
CPSF1-207ENST00000531727 MACF1Q9UPN3 7388 aaKnown RBP7.99□□□□□ -1.13
CPSF1-207ENST00000531727 hDV103S1A0JD37 113 aa7.98□□□□□ -1.13
CPSF1-207ENST00000531727 H1FX-AS1Q4G0G2 97 aa7.98□□□□□ -1.13
CPSF1-207ENST00000531727 K7EQZ3 153 aa7.97□□□□□ -1.13
CPSF1-207ENST00000531727 NDUFS5O43920 106 aa7.96□□□□□ -1.14
CPSF1-207ENST00000531727 K7EP34 96 aa7.94□□□□□ -1.14
CPSF1-207ENST00000531727 SMCPP49901 116 aaPredicted RBP7.93□□□□□ -1.14
CPSF1-207ENST00000531727 SYNE2Q8WXH0 6885 aaKnown RBP7.92□□□□□ -1.14
CPSF1-207ENST00000531727 H3BT86 120 aa7.91□□□□□ -1.14
CPSF1-207ENST00000531727 PRO0461Q9UI25 63 aa7.91□□□□□ -1.14
CPSF1-207ENST00000531727 IGKV2D-30A0A075B6S6 120 aa7.9□□□□□ -1.14
CPSF1-207ENST00000531727 IGKV2-30P06310 120 aa7.9□□□□□ -1.14
CPSF1-207ENST00000531727 BPY2O14599 106 aa7.89□□□□□ -1.15
CPSF1-207ENST00000531727 C7orf65Q6ZTY9 151 aa7.89□□□□□ -1.15
CPSF1-207ENST00000531727 Q5W150 140 aa7.88□□□□□ -1.15
CPSF1-207ENST00000531727 A0A1B0GV90 55 aa7.84□□□□□ -1.15
CPSF1-207ENST00000531727 GTF2H5Q6ZYL4 71 aa7.84□□□□□ -1.15
CPSF1-207ENST00000531727 CASC2Q6XLA1 102 aa7.82□□□□□ -1.16
CPSF1-207ENST00000531727 Q8N9L7 120 aa7.81□□□□□ -1.16
CPSF1-207ENST00000531727 HCG22E2RYF7 251 aa7.8□□□□□ -1.16
CPSF1-207ENST00000531727 C4orf26Q17RF5 130 aa7.78□□□□□ -1.16
CPSF1-207ENST00000531727 CXCL6P80162 114 aa7.76□□□□□ -1.17
CPSF1-207ENST00000531727 F8W1H4 67 aa7.75□□□□□ -1.17
CPSF1-207ENST00000531727 ETDBQ3ZM63 59 aa7.75□□□□□ -1.17
CPSF1-207ENST00000531727 KRTAP6-3Q3LI67 103 aa7.74□□□□□ -1.17
CPSF1-207ENST00000531727 C5orf47Q569G3 176 aa7.7□□□□□ -1.18
CPSF1-207ENST00000531727 KRTAP3-1Q9BYR8 98 aa7.67□□□□□ -1.18
CPSF1-207ENST00000531727 FAM236AA0A1B0GUQ0 79 aa7.66□□□□□ -1.18
CPSF1-207ENST00000531727 FAM236BA0A1B0GV22 79 aa7.66□□□□□ -1.18
CPSF1-207ENST00000531727 UBL5Q9BZL1 73 aa7.66□□□□□ -1.18
CPSF1-207ENST00000531727 S4R3F8 94 aa7.65□□□□□ -1.18
CPSF1-207ENST00000531727 CSAG1Q6PB30 78 aa7.62□□□□□ -1.19
CPSF1-207ENST00000531727 C1orf64Q8NEQ6 169 aa7.62□□□□□ -1.19
CPSF1-207ENST00000531727 MT1BP07438 61 aa7.6□□□□□ -1.19
CPSF1-207ENST00000531727 LCA10Q71F78 164 aa7.6□□□□□ -1.19
CPSF1-207ENST00000531727 A6NN06 94 aa7.58□□□□□ -1.2
CPSF1-207ENST00000531727 Q5VV11 94 aa7.58□□□□□ -1.2
CPSF1-207ENST00000531727 SPRR2GQ9BYE4 73 aa7.58□□□□□ -1.2
CPSF1-207ENST00000531727 KRTAP19-8Q3LI54 63 aa7.57□□□□□ -1.2
CPSF1-207ENST00000531727 TP53AIP1Q9HCN2 124 aa7.56□□□□□ -1.2
CPSF1-207ENST00000531727 KLKP1Q107X0 134 aa7.5□□□□□ -1.21
CPSF1-207ENST00000531727 NEBP20929 6669 aa7.49□□□□□ -1.21
CPSF1-207ENST00000531727 KRTAP10-5P60370 271 aa7.47□□□□□ -1.21
CPSF1-207ENST00000531727 KRTAP3-3Q9BYR6 98 aa7.47□□□□□ -1.21
CPSF1-207ENST00000531727 FAM240AA0A1B0GVK7 77 aa7.44□□□□□ -1.22
CPSF1-207ENST00000531727 ACYP1P07311 99 aa7.44□□□□□ -1.22
CPSF1-207ENST00000531727 CYP4F30PQ9H0H9 118 aa7.44□□□□□ -1.22
CPSF1-207ENST00000531727 MUC12Q9UKN1 5478 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms