RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 BPY2O14599 106 aa7.49□□□□□ -1.21
CD44-224ENST00000526669 NOTCH2NLQ7Z3S9 236 aa7.48□□□□□ -1.21
CD44-224ENST00000526669 IGKV3D-7A0A0C4DH55 119 aa7.47□□□□□ -1.21
CD44-224ENST00000526669 A8MWP4 228 aa7.47□□□□□ -1.21
CD44-224ENST00000526669 NDUFB1O75438 58 aa7.47□□□□□ -1.21
CD44-224ENST00000526669 FAM240AA0A1B0GVK7 77 aa7.45□□□□□ -1.22
CD44-224ENST00000526669 K7EQZ3 153 aa7.45□□□□□ -1.22
CD44-224ENST00000526669 ACYP1P07311 99 aa7.45□□□□□ -1.22
CD44-224ENST00000526669 LINC00313P59037 77 aa7.45□□□□□ -1.22
CD44-224ENST00000526669 Q8N9L7 120 aa7.45□□□□□ -1.22
CD44-224ENST00000526669 PRR15Q8IV56 129 aa7.43□□□□□ -1.22
CD44-224ENST00000526669 C8orf87E5RJ46 101 aa7.42□□□□□ -1.22
CD44-224ENST00000526669 J3QR89 54 aa7.42□□□□□ -1.22
CD44-224ENST00000526669 C8orf17Q9NRJ1 99 aa7.42□□□□□ -1.22
CD44-224ENST00000526669 UBR4Q5T4S7 5183 aa7.42□□□□□ -1.22
CD44-224ENST00000526669 KRTAP16-1A8MUX0 517 aa7.4□□□□□ -1.22
CD44-224ENST00000526669 MMP24-AS1A0A0U1RRL7 71 aa7.38□□□□□ -1.23
CD44-224ENST00000526669 RPL37P61927 97 aaKnown RBP7.38□□□□□ -1.23
CD44-224ENST00000526669 CXCL6P80162 114 aa7.36□□□□□ -1.23
CD44-224ENST00000526669 RNF213Q63HN8 5207 aa7.36□□□□□ -1.23
CD44-224ENST00000526669 A8MUU9 505 aa7.35□□□□□ -1.23
CD44-224ENST00000526669 PCOTHQ58A44 107 aa7.35□□□□□ -1.23
CD44-224ENST00000526669 Q75L30 129 aa7.35□□□□□ -1.23
CD44-224ENST00000526669 WFDC13Q8IUB5 93 aa7.35□□□□□ -1.23
CD44-224ENST00000526669 C20orf166-AS1Q96NR2 134 aa7.35□□□□□ -1.23
CD44-224ENST00000526669 SEC61BP60468 96 aaKnown RBP7.34□□□□□ -1.23
CD44-224ENST00000526669 hDV103S1A0JD37 113 aa7.33□□□□□ -1.24
CD44-224ENST00000526669 K7ERU9 68 aa7.33□□□□□ -1.24
CD44-224ENST00000526669 LINC00643Q86TS7 51 aa7.33□□□□□ -1.24
CD44-224ENST00000526669 ATP5EP2Q5VTU8 51 aa7.32□□□□□ -1.24
CD44-224ENST00000526669 TMEM254Q8TBM7 123 aa7.32□□□□□ -1.24
CD44-224ENST00000526669 CASC2Q6XLA1 102 aa7.3□□□□□ -1.24
CD44-224ENST00000526669 MRPL34Q9BQ48 92 aaKnown RBP7.3□□□□□ -1.24
CD44-224ENST00000526669 HCG22E2RYF7 251 aa7.29□□□□□ -1.24
CD44-224ENST00000526669 HIST1H4AP62805 103 aaKnown RBP7.29□□□□□ -1.24
CD44-224ENST00000526669 NDUFS5O43920 106 aa7.28□□□□□ -1.24
CD44-224ENST00000526669 ATP11AUNQ6ZP68 121 aa7.28□□□□□ -1.24
CD44-224ENST00000526669 KRTAP4-1Q9BYQ7 146 aa7.27□□□□□ -1.25
CD44-224ENST00000526669 Q8N9P0 234 aaPredicted RBP7.26□□□□□ -1.25
CD44-224ENST00000526669 A0A087WVE0 104 aa7.24□□□□□ -1.25
CD44-224ENST00000526669 ZCCHC13Q8WW36 166 aaKnown RBP7.21□□□□□ -1.26
CD44-224ENST00000526669 MT-ATP8P03928 68 aa7.2□□□□□ -1.26
CD44-224ENST00000526669 MUC2Q02817 5179 aa7.18□□□□□ -1.26
CD44-224ENST00000526669 Q5W150 140 aa7.14□□□□□ -1.27
CD44-224ENST00000526669 TP53AIP1Q9HCN2 124 aa7.08□□□□□ -1.28
CD44-224ENST00000526669 IMUPQ9GZP8 106 aa7.07□□□□□ -1.28
CD44-224ENST00000526669 IGKV2D-30A0A075B6S6 120 aa7.06□□□□□ -1.28
CD44-224ENST00000526669 IGKV2-30P06310 120 aa7.06□□□□□ -1.28
CD44-224ENST00000526669 SPINK7P58062 85 aa7.06□□□□□ -1.28
CD44-224ENST00000526669 FAT4Q6V0I7 4981 aa7.04□□□□□ -1.28
CD44-224ENST00000526669 FAM236AA0A1B0GUQ0 79 aa7.03□□□□□ -1.28
CD44-224ENST00000526669 FAM236BA0A1B0GV22 79 aa7.03□□□□□ -1.28
CD44-224ENST00000526669 SCGB1A1P11684 91 aa7.03□□□□□ -1.28
CD44-224ENST00000526669 HRES1P13985 223 aa7.03□□□□□ -1.28
CD44-224ENST00000526669 UQCRQO14949 82 aa7.02□□□□□ -1.29
CD44-224ENST00000526669 TRAV22A0A0B4J277 110 aa7.01□□□□□ -1.29
CD44-224ENST00000526669 A0A0U1RQV1 116 aa7.01□□□□□ -1.29
CD44-224ENST00000526669 KRTAP19-2Q3LHN2 52 aa7.01□□□□□ -1.29
CD44-224ENST00000526669 C7orf65Q6ZTY9 151 aa7.01□□□□□ -1.29
CD44-224ENST00000526669 OCR1Q9BZK8 76 aa7.01□□□□□ -1.29
CD44-224ENST00000526669 H0Y9P7 68 aa7□□□□□ -1.29
CD44-224ENST00000526669 COX6B2Q6YFQ2 88 aa6.99□□□□□ -1.29
CD44-224ENST00000526669 FLGP20930 4061 aaPredicted RBP6.99□□□□□ -1.29
CD44-224ENST00000526669 FAM236DA0A1B0GTK5 79 aa6.96□□□□□ -1.3
CD44-224ENST00000526669 FAM236CP0DP71 79 aa6.96□□□□□ -1.3
CD44-224ENST00000526669 LCE2CQ5TA81 110 aa6.95□□□□□ -1.3
CD44-224ENST00000526669 MPLKIPQ8TAP9 179 aa6.95□□□□□ -1.3
CD44-224ENST00000526669 RBM12B-AS1Q9P1G2 102 aa6.95□□□□□ -1.3
CD44-224ENST00000526669 LINC00208Q96KT6 92 aa6.92□□□□□ -1.3
CD44-224ENST00000526669 LOC101927531A0A1B0GV80 90 aa6.91□□□□□ -1.3
CD44-224ENST00000526669 ATOX1O00244 68 aa6.91□□□□□ -1.3
CD44-224ENST00000526669 MP68P56378 58 aa6.91□□□□□ -1.3
CD44-224ENST00000526669 C1orf64Q8NEQ6 169 aa6.9□□□□□ -1.3
CD44-224ENST00000526669 CYP4F30PQ9H0H9 118 aa6.9□□□□□ -1.3
CD44-224ENST00000526669 TRAV7A0A075B6U4 112 aa6.89□□□□□ -1.31
CD44-224ENST00000526669 C5orf47Q569G3 176 aa6.89□□□□□ -1.31
CD44-224ENST00000526669 C4orf26Q17RF5 130 aa6.88□□□□□ -1.31
CD44-224ENST00000526669 SMIM20Q8N5G0 67 aa6.88□□□□□ -1.31
CD44-224ENST00000526669 MT1HP80294 61 aa6.85□□□□□ -1.31
CD44-224ENST00000526669 KLKP1Q107X0 134 aa6.83□□□□□ -1.32
CD44-224ENST00000526669 LCE2AQ5TA79 106 aaPredicted RBP6.83□□□□□ -1.32
CD44-224ENST00000526669 H3BPC8 53 aa6.82□□□□□ -1.32
CD44-224ENST00000526669 SERP2Q8N6R1 65 aa6.8□□□□□ -1.32
CD44-224ENST00000526669 M0R2T5 61 aa6.78□□□□□ -1.32
CD44-224ENST00000526669 H1FX-AS1Q4G0G2 97 aa6.77□□□□□ -1.33
CD44-224ENST00000526669 KRTAP3-1Q9BYR8 98 aa6.77□□□□□ -1.33
CD44-224ENST00000526669 SNURFQ9Y675 71 aa6.77□□□□□ -1.33
CD44-224ENST00000526669 C20orf197Q8N268 126 aa6.75□□□□□ -1.33
CD44-224ENST00000526669 COX7CP15954 63 aa6.72□□□□□ -1.33
CD44-224ENST00000526669 ANAPC13Q9BS18 74 aa6.71□□□□□ -1.34
CD44-224ENST00000526669 S4R3F8 94 aa6.67□□□□□ -1.34
CD44-224ENST00000526669 KRTAP10-6P60371 365 aaPredicted RBP6.66□□□□□ -1.34
CD44-224ENST00000526669 LORP23490 312 aaPredicted RBP6.62□□□□□ -1.35
CD44-224ENST00000526669 LCA10Q71F78 164 aa6.62□□□□□ -1.35
CD44-224ENST00000526669 A8MUN3 132 aa6.61□□□□□ -1.35
CD44-224ENST00000526669 CYSTM1Q9H1C7 97 aa6.61□□□□□ -1.35
CD44-224ENST00000526669 CCDC179H3BU77 68 aa6.6□□□□□ -1.35
CD44-224ENST00000526669 DMAC1Q96GE9 116 aa6.6□□□□□ -1.35
CD44-224ENST00000526669 KRTAP3-3Q9BYR6 98 aa6.55□□□□□ -1.36
CD44-224ENST00000526669 SPANXA2-OT1Q8N9U9 137 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 210 ms