RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 UBL5Q9BZL1 73 aa11.61□□□□□ -0.55
LSM6-207ENST00000515311 J3QR89 54 aa11.54□□□□□ -0.56
LSM6-207ENST00000515311 A8MWP4 228 aa11.53□□□□□ -0.56
LSM6-207ENST00000515311 BPY2O14599 106 aa11.53□□□□□ -0.56
LSM6-207ENST00000515311 CDIP1Q9H305 208 aa11.53□□□□□ -0.56
LSM6-207ENST00000515311 C9orf92A6NGG3 77 aa11.52□□□□□ -0.57
LSM6-207ENST00000515311 LPAP08519 4548 aa11.52□□□□□ -0.57
LSM6-207ENST00000515311 A0A1B0GVX0 72 aa11.51□□□□□ -0.57
LSM6-207ENST00000515311 NDUFB1O75438 58 aa11.51□□□□□ -0.57
LSM6-207ENST00000515311 DSCR10P59022 87 aa11.49□□□□□ -0.57
LSM6-207ENST00000515311 IGHV6-1A0A0B4J1U7 121 aa11.48□□□□□ -0.57
LSM6-207ENST00000515311 IGKV3D-7A0A0C4DH55 119 aa11.47□□□□□ -0.57
LSM6-207ENST00000515311 LRP2P98164 4655 aa11.47□□□□□ -0.57
LSM6-207ENST00000515311 C8orf87E5RJ46 101 aa11.46□□□□□ -0.57
LSM6-207ENST00000515311 XP32Q5T750 250 aa11.46□□□□□ -0.57
LSM6-207ENST00000515311 LINC00313P59037 77 aa11.45□□□□□ -0.58
LSM6-207ENST00000515311 PRR15Q8IV56 129 aa11.45□□□□□ -0.58
LSM6-207ENST00000515311 CXCL6P80162 114 aa11.44□□□□□ -0.58
LSM6-207ENST00000515311 K7EQZ3 153 aa11.42□□□□□ -0.58
LSM6-207ENST00000515311 NOTCH2NLQ7Z3S9 236 aa11.41□□□□□ -0.58
LSM6-207ENST00000515311 K7ERU9 68 aa11.4□□□□□ -0.58
LSM6-207ENST00000515311 ATP5EP2Q5VTU8 51 aa11.39□□□□□ -0.59
LSM6-207ENST00000515311 LINC00643Q86TS7 51 aa11.37□□□□□ -0.59
LSM6-207ENST00000515311 C8orf17Q9NRJ1 99 aa11.37□□□□□ -0.59
LSM6-207ENST00000515311 KRTAP16-1A8MUX0 517 aa11.36□□□□□ -0.59
LSM6-207ENST00000515311 Q8N9L7 120 aa11.36□□□□□ -0.59
LSM6-207ENST00000515311 C20orf166-AS1Q96NR2 134 aa11.33□□□□□ -0.6
LSM6-207ENST00000515311 MMP24-AS1A0A0U1RRL7 71 aa11.32□□□□□ -0.6
LSM6-207ENST00000515311 RPL37P61927 97 aaKnown RBP11.32□□□□□ -0.6
LSM6-207ENST00000515311 Q75L30 129 aa11.32□□□□□ -0.6
LSM6-207ENST00000515311 A8MUU9 505 aa11.3□□□□□ -0.6
LSM6-207ENST00000515311 SEC61BP60468 96 aaKnown RBP11.28□□□□□ -0.6
LSM6-207ENST00000515311 hDV103S1A0JD37 113 aa11.26□□□□□ -0.61
LSM6-207ENST00000515311 TMEM254Q8TBM7 123 aa11.26□□□□□ -0.61
LSM6-207ENST00000515311 Q8N9P0 234 aaPredicted RBP11.23□□□□□ -0.61
LSM6-207ENST00000515311 HCG22E2RYF7 251 aa11.22□□□□□ -0.61
LSM6-207ENST00000515311 CASC2Q6XLA1 102 aa11.22□□□□□ -0.61
LSM6-207ENST00000515311 MRPL34Q9BQ48 92 aaKnown RBP11.22□□□□□ -0.61
LSM6-207ENST00000515311 UBR4Q5T4S7 5183 aa11.21□□□□□ -0.62
LSM6-207ENST00000515311 WFDC13Q8IUB5 93 aa11.2□□□□□ -0.62
LSM6-207ENST00000515311 ATP11AUNQ6ZP68 121 aa11.19□□□□□ -0.62
LSM6-207ENST00000515311 HIST1H4AP62805 103 aaKnown RBP11.18□□□□□ -0.62
LSM6-207ENST00000515311 PCOTHQ58A44 107 aa11.18□□□□□ -0.62
LSM6-207ENST00000515311 MUC17Q685J3 4493 aa11.16□□□□□ -0.62
LSM6-207ENST00000515311 NDUFS5O43920 106 aa11.1□□□□□ -0.63
LSM6-207ENST00000515311 A0A087WVE0 104 aa11.08□□□□□ -0.64
LSM6-207ENST00000515311 ZCCHC13Q8WW36 166 aaKnown RBP11.08□□□□□ -0.64
LSM6-207ENST00000515311 IMUPQ9GZP8 106 aa11.07□□□□□ -0.64
LSM6-207ENST00000515311 MT-ATP8P03928 68 aa11.05□□□□□ -0.64
LSM6-207ENST00000515311 KRTAP4-1Q9BYQ7 146 aa11.01□□□□□ -0.65
LSM6-207ENST00000515311 TP53AIP1Q9HCN2 124 aa11□□□□□ -0.65
LSM6-207ENST00000515311 RNF213Q63HN8 5207 aa10.98□□□□□ -0.65
LSM6-207ENST00000515311 Q5W150 140 aa10.93□□□□□ -0.66
LSM6-207ENST00000515311 MUC2Q02817 5179 aa10.92□□□□□ -0.66
LSM6-207ENST00000515311 UQCRQO14949 82 aa10.86□□□□□ -0.67
LSM6-207ENST00000515311 SPINK7P58062 85 aa10.85□□□□□ -0.67
LSM6-207ENST00000515311 SCGB1A1P11684 91 aa10.84□□□□□ -0.67
LSM6-207ENST00000515311 OCR1Q9BZK8 76 aa10.84□□□□□ -0.67
LSM6-207ENST00000515311 TRAV22A0A0B4J277 110 aa10.82□□□□□ -0.68
LSM6-207ENST00000515311 FAM236AA0A1B0GUQ0 79 aa10.82□□□□□ -0.68
LSM6-207ENST00000515311 FAM236BA0A1B0GV22 79 aa10.82□□□□□ -0.68
LSM6-207ENST00000515311 C7orf65Q6ZTY9 151 aa10.78□□□□□ -0.68
LSM6-207ENST00000515311 IGKV2D-30A0A075B6S6 120 aa10.77□□□□□ -0.69
LSM6-207ENST00000515311 A0A0U1RQV1 116 aa10.77□□□□□ -0.69
LSM6-207ENST00000515311 IGKV2-30P06310 120 aa10.77□□□□□ -0.69
LSM6-207ENST00000515311 LOC100996750A0A140TA64 210 aa10.75□□□□□ -0.69
LSM6-207ENST00000515311 ATOX1O00244 68 aa10.75□□□□□ -0.69
LSM6-207ENST00000515311 HRES1P13985 223 aa10.75□□□□□ -0.69
LSM6-207ENST00000515311 KRTAP4-6Q9BYQ5 205 aa10.75□□□□□ -0.69
LSM6-207ENST00000515311 SMIM20Q8N5G0 67 aa10.74□□□□□ -0.69
LSM6-207ENST00000515311 H0Y9P7 68 aa10.73□□□□□ -0.69
LSM6-207ENST00000515311 KRTAP19-2Q3LHN2 52 aa10.7□□□□□ -0.7
LSM6-207ENST00000515311 C5orf47Q569G3 176 aa10.7□□□□□ -0.7
LSM6-207ENST00000515311 MPLKIPQ8TAP9 179 aa10.7□□□□□ -0.7
LSM6-207ENST00000515311 LOC101927531A0A1B0GV80 90 aa10.69□□□□□ -0.7
LSM6-207ENST00000515311 TRAV7A0A075B6U4 112 aa10.67□□□□□ -0.7
LSM6-207ENST00000515311 MP68P56378 58 aa10.67□□□□□ -0.7
LSM6-207ENST00000515311 RBM12B-AS1Q9P1G2 102 aa10.67□□□□□ -0.7
LSM6-207ENST00000515311 CYP4F30PQ9H0H9 118 aa10.65□□□□□ -0.7
LSM6-207ENST00000515311 C1orf64Q8NEQ6 169 aa10.63□□□□□ -0.71
LSM6-207ENST00000515311 H3BPC8 53 aa10.62□□□□□ -0.71
LSM6-207ENST00000515311 COX6B2Q6YFQ2 88 aa10.62□□□□□ -0.71
LSM6-207ENST00000515311 LINC00208Q96KT6 92 aa10.61□□□□□ -0.71
LSM6-207ENST00000515311 FAT4Q6V0I7 4981 aa10.58□□□□□ -0.72
LSM6-207ENST00000515311 FAM236DA0A1B0GTK5 79 aa10.56□□□□□ -0.72
LSM6-207ENST00000515311 FAM236CP0DP71 79 aa10.56□□□□□ -0.72
LSM6-207ENST00000515311 SERP2Q8N6R1 65 aa10.55□□□□□ -0.72
LSM6-207ENST00000515311 C4orf26Q17RF5 130 aa10.52□□□□□ -0.73
LSM6-207ENST00000515311 MT1HP80294 61 aa10.45□□□□□ -0.74
LSM6-207ENST00000515311 KLKP1Q107X0 134 aa10.45□□□□□ -0.74
LSM6-207ENST00000515311 COX7CP15954 63 aa10.4□□□□□ -0.74
LSM6-207ENST00000515311 H1FX-AS1Q4G0G2 97 aa10.4□□□□□ -0.74
LSM6-207ENST00000515311 FLGP20930 4061 aaPredicted RBP10.39□□□□□ -0.75
LSM6-207ENST00000515311 C20orf197Q8N268 126 aa10.38□□□□□ -0.75
LSM6-207ENST00000515311 KRTAP3-1Q9BYR8 98 aa10.38□□□□□ -0.75
LSM6-207ENST00000515311 ANAPC13Q9BS18 74 aa10.37□□□□□ -0.75
LSM6-207ENST00000515311 SNURFQ9Y675 71 aa10.36□□□□□ -0.75
LSM6-207ENST00000515311 A8MUN3 132 aa10.29□□□□□ -0.76
LSM6-207ENST00000515311 M0R2T5 61 aa10.29□□□□□ -0.76
LSM6-207ENST00000515311 DMAC1Q96GE9 116 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms