RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 A8MWP4 228 aa16.05■□□□□ 0.16
LIMCH1-211ENST00000509638 NDUFB1O75438 58 aa16.04■□□□□ 0.16
LIMCH1-211ENST00000509638 BPY2O14599 106 aa16.02■□□□□ 0.16
LIMCH1-211ENST00000509638 LINC00313P59037 77 aa16.02■□□□□ 0.16
LIMCH1-211ENST00000509638 NOTCH2NLQ7Z3S9 236 aa16.01■□□□□ 0.15
LIMCH1-211ENST00000509638 IGKV3D-7A0A0C4DH55 119 aa16■□□□□ 0.15
LIMCH1-211ENST00000509638 MUC17Q685J3 4493 aa15.98■□□□□ 0.15
LIMCH1-211ENST00000509638 C8orf87E5RJ46 101 aa15.97■□□□□ 0.15
LIMCH1-211ENST00000509638 FAM240AA0A1B0GVK7 77 aa15.96■□□□□ 0.15
LIMCH1-211ENST00000509638 SEC61BP60468 96 aaKnown RBP15.96■□□□□ 0.14
LIMCH1-211ENST00000509638 RPL37P61927 97 aaKnown RBP15.96■□□□□ 0.14
LIMCH1-211ENST00000509638 RNF213Q63HN8 5207 aa15.95■□□□□ 0.14
LIMCH1-211ENST00000509638 ACYP1P07311 99 aa15.94■□□□□ 0.14
LIMCH1-211ENST00000509638 PRR15Q8IV56 129 aa15.94■□□□□ 0.14
LIMCH1-211ENST00000509638 K7EQZ3 153 aa15.93■□□□□ 0.14
LIMCH1-211ENST00000509638 KRTAP16-1A8MUX0 517 aa15.92■□□□□ 0.14
LIMCH1-211ENST00000509638 Q75L30 129 aa15.9■□□□□ 0.14
LIMCH1-211ENST00000509638 C20orf166-AS1Q96NR2 134 aa15.89■□□□□ 0.13
LIMCH1-211ENST00000509638 C8orf17Q9NRJ1 99 aa15.88■□□□□ 0.13
LIMCH1-211ENST00000509638 Q8N9L7 120 aa15.87■□□□□ 0.13
LIMCH1-211ENST00000509638 A8MUU9 505 aa15.85■□□□□ 0.13
LIMCH1-211ENST00000509638 PCOTHQ58A44 107 aa15.85■□□□□ 0.13
LIMCH1-211ENST00000509638 MUC2Q02817 5179 aa15.83■□□□□ 0.12
LIMCH1-211ENST00000509638 MMP24-AS1A0A0U1RRL7 71 aa15.8■□□□□ 0.12
LIMCH1-211ENST00000509638 J3QR89 54 aa15.78■□□□□ 0.12
LIMCH1-211ENST00000509638 CXCL6P80162 114 aa15.78■□□□□ 0.12
LIMCH1-211ENST00000509638 ATP11AUNQ6ZP68 121 aa15.75■□□□□ 0.11
LIMCH1-211ENST00000509638 hDV103S1A0JD37 113 aa15.7■□□□□ 0.1
LIMCH1-211ENST00000509638 KRTAP4-1Q9BYQ7 146 aa15.7■□□□□ 0.1
LIMCH1-211ENST00000509638 TMEM254Q8TBM7 123 aa15.69■□□□□ 0.1
LIMCH1-211ENST00000509638 ATP5EP2Q5VTU8 51 aa15.68■□□□□ 0.1
LIMCH1-211ENST00000509638 Q8N9P0 234 aaPredicted RBP15.67■□□□□ 0.1
LIMCH1-211ENST00000509638 WFDC13Q8IUB5 93 aa15.66■□□□□ 0.1
LIMCH1-211ENST00000509638 MRPL34Q9BQ48 92 aaKnown RBP15.66■□□□□ 0.1
LIMCH1-211ENST00000509638 CASC2Q6XLA1 102 aa15.62■□□□□ 0.09
LIMCH1-211ENST00000509638 LINC00643Q86TS7 51 aa15.62■□□□□ 0.09
LIMCH1-211ENST00000509638 K7ERU9 68 aa15.61■□□□□ 0.09
LIMCH1-211ENST00000509638 HCG22E2RYF7 251 aa15.6■□□□□ 0.09
LIMCH1-211ENST00000509638 NDUFS5O43920 106 aa15.53■□□□□ 0.08
LIMCH1-211ENST00000509638 ZCCHC13Q8WW36 166 aaKnown RBP15.52■□□□□ 0.07
LIMCH1-211ENST00000509638 HIST1H4AP62805 103 aaKnown RBP15.49■□□□□ 0.07
LIMCH1-211ENST00000509638 A0A0U1RQV1 116 aa15.37■□□□□ 0.05
LIMCH1-211ENST00000509638 A0A087WVE0 104 aa15.36■□□□□ 0.05
LIMCH1-211ENST00000509638 FAT4Q6V0I7 4981 aa15.31■□□□□ 0.04
LIMCH1-211ENST00000509638 Q5W150 140 aa15.28■□□□□ 0.04
LIMCH1-211ENST00000509638 SPINK7P58062 85 aa15.23■□□□□ 0.03
LIMCH1-211ENST00000509638 TP53AIP1Q9HCN2 124 aa15.23■□□□□ 0.03
LIMCH1-211ENST00000509638 MT-ATP8P03928 68 aa15.21■□□□□ 0.03
LIMCH1-211ENST00000509638 KRTAP19-2Q3LHN2 52 aa15.21■□□□□ 0.03
LIMCH1-211ENST00000509638 HRES1P13985 223 aa15.15■□□□□ 0.02
LIMCH1-211ENST00000509638 IGKV2D-30A0A075B6S6 120 aa15.11■□□□□ 0.01
LIMCH1-211ENST00000509638 IGKV2-30P06310 120 aa15.11■□□□□ 0.01
LIMCH1-211ENST00000509638 LCE2CQ5TA81 110 aa15.11■□□□□ 0.01
LIMCH1-211ENST00000509638 COX6B2Q6YFQ2 88 aa15.11■□□□□ 0.01
LIMCH1-211ENST00000509638 IMUPQ9GZP8 106 aa15.11■□□□□ 0.01
LIMCH1-211ENST00000509638 C7orf65Q6ZTY9 151 aa15.08■□□□□ 0
LIMCH1-211ENST00000509638 MPLKIPQ8TAP9 179 aa15.05■□□□□ -0
LIMCH1-211ENST00000509638 TRAV22A0A0B4J277 110 aa15.03■□□□□ -0
LIMCH1-211ENST00000509638 UQCRQO14949 82 aa15.02□□□□□ -0.01
LIMCH1-211ENST00000509638 RBM12B-AS1Q9P1G2 102 aa15.02□□□□□ -0.01
LIMCH1-211ENST00000509638 OCR1Q9BZK8 76 aa14.98□□□□□ -0.01
LIMCH1-211ENST00000509638 FAM236DA0A1B0GTK5 79 aa14.96□□□□□ -0.01
LIMCH1-211ENST00000509638 FAM236CP0DP71 79 aa14.96□□□□□ -0.01
LIMCH1-211ENST00000509638 SCGB1A1P11684 91 aa14.95□□□□□ -0.02
LIMCH1-211ENST00000509638 LCE2AQ5TA79 106 aaPredicted RBP14.95□□□□□ -0.02
LIMCH1-211ENST00000509638 FLGP20930 4061 aaPredicted RBP14.92□□□□□ -0.02
LIMCH1-211ENST00000509638 FAM236AA0A1B0GUQ0 79 aa14.91□□□□□ -0.02
LIMCH1-211ENST00000509638 FAM236BA0A1B0GV22 79 aa14.91□□□□□ -0.02
LIMCH1-211ENST00000509638 H0Y9P7 68 aa14.91□□□□□ -0.02
LIMCH1-211ENST00000509638 MT1HP80294 61 aa14.9□□□□□ -0.02
LIMCH1-211ENST00000509638 ATOX1O00244 68 aa14.86□□□□□ -0.03
LIMCH1-211ENST00000509638 LOC101927531A0A1B0GV80 90 aa14.84□□□□□ -0.03
LIMCH1-211ENST00000509638 CYP4F30PQ9H0H9 118 aa14.8□□□□□ -0.04
LIMCH1-211ENST00000509638 C4orf26Q17RF5 130 aa14.77□□□□□ -0.05
LIMCH1-211ENST00000509638 MP68P56378 58 aa14.76□□□□□ -0.05
LIMCH1-211ENST00000509638 C5orf47Q569G3 176 aa14.74□□□□□ -0.05
LIMCH1-211ENST00000509638 C1orf64Q8NEQ6 169 aa14.74□□□□□ -0.05
LIMCH1-211ENST00000509638 LINC00208Q96KT6 92 aa14.73□□□□□ -0.05
LIMCH1-211ENST00000509638 SMIM20Q8N5G0 67 aa14.7□□□□□ -0.06
LIMCH1-211ENST00000509638 M0R2T5 61 aa14.69□□□□□ -0.06
LIMCH1-211ENST00000509638 TRAV7A0A075B6U4 112 aa14.66□□□□□ -0.06
LIMCH1-211ENST00000509638 H3BPC8 53 aa14.62□□□□□ -0.07
LIMCH1-211ENST00000509638 H1FX-AS1Q4G0G2 97 aa14.59□□□□□ -0.07
LIMCH1-211ENST00000509638 KLKP1Q107X0 134 aa14.54□□□□□ -0.08
LIMCH1-211ENST00000509638 KRTAP3-1Q9BYR8 98 aa14.52□□□□□ -0.08
LIMCH1-211ENST00000509638 KRTAP10-6P60371 365 aaPredicted RBP14.48□□□□□ -0.09
LIMCH1-211ENST00000509638 SERP2Q8N6R1 65 aa14.46□□□□□ -0.09
LIMCH1-211ENST00000509638 LORP23490 312 aaPredicted RBP14.43□□□□□ -0.1
LIMCH1-211ENST00000509638 PCP4P48539 62 aa14.39□□□□□ -0.11
LIMCH1-211ENST00000509638 SNURFQ9Y675 71 aa14.32□□□□□ -0.12
LIMCH1-211ENST00000509638 C20orf197Q8N268 126 aa14.31□□□□□ -0.12
LIMCH1-211ENST00000509638 S4R3F8 94 aa14.31□□□□□ -0.12
LIMCH1-211ENST00000509638 ANAPC13Q9BS18 74 aa14.3□□□□□ -0.12
LIMCH1-211ENST00000509638 A8MUN3 132 aa14.26□□□□□ -0.13
LIMCH1-211ENST00000509638 LCA10Q71F78 164 aa14.23□□□□□ -0.13
LIMCH1-211ENST00000509638 COX7CP15954 63 aa14.22□□□□□ -0.13
LIMCH1-211ENST00000509638 KRTAP9-8Q9BYQ0 159 aa14.19□□□□□ -0.14
LIMCH1-211ENST00000509638 DMAC1Q96GE9 116 aa14.15□□□□□ -0.14
LIMCH1-211ENST00000509638 MT2AP02795 61 aa14.09□□□□□ -0.15
LIMCH1-211ENST00000509638 KRTAP3-3Q9BYR6 98 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms