RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 J3KT08 172 aa9.01□□□□□ -0.97
COL9A3-212ENST00000481800 Q6ZQT0 140 aa8.99□□□□□ -0.97
COL9A3-212ENST00000481800 CRCT1Q9UGL9 99 aa8.99□□□□□ -0.97
COL9A3-212ENST00000481800 LYRM7Q5U5X0 104 aa8.98□□□□□ -0.97
COL9A3-212ENST00000481800 FLGP20930 4061 aaPredicted RBP8.97□□□□□ -0.97
COL9A3-212ENST00000481800 FSIP2Q5CZC0 6907 aa8.97□□□□□ -0.97
COL9A3-212ENST00000481800 FAM236DA0A1B0GTK5 79 aa8.96□□□□□ -0.98
COL9A3-212ENST00000481800 TSTD3H0UI37 97 aa8.96□□□□□ -0.98
COL9A3-212ENST00000481800 NDUFB1O75438 58 aa8.96□□□□□ -0.98
COL9A3-212ENST00000481800 FAM236CP0DP71 79 aa8.96□□□□□ -0.98
COL9A3-212ENST00000481800 PDE6GP18545 87 aa8.96□□□□□ -0.98
COL9A3-212ENST00000481800 LOC110117498A0A087WWA1 95 aa8.94□□□□□ -0.98
COL9A3-212ENST00000481800 A0A1B0GW54 56 aa8.94□□□□□ -0.98
COL9A3-212ENST00000481800 BATFQ16520 125 aa8.94□□□□□ -0.98
COL9A3-212ENST00000481800 RBM12B-AS1Q9P1G2 102 aa8.93□□□□□ -0.98
COL9A3-212ENST00000481800 C14orf132Q9NPU4 83 aa8.91□□□□□ -0.98
COL9A3-212ENST00000481800 A8MWP4 228 aa8.88□□□□□ -0.99
COL9A3-212ENST00000481800 HRES1P13985 223 aa8.88□□□□□ -0.99
COL9A3-212ENST00000481800 ZCCHC13Q8WW36 166 aaKnown RBP8.88□□□□□ -0.99
COL9A3-212ENST00000481800 C8orf17Q9NRJ1 99 aa8.86□□□□□ -0.99
COL9A3-212ENST00000481800 NREPQ16612 68 aa8.85□□□□□ -0.99
COL9A3-212ENST00000481800 MPLKIPQ8TAP9 179 aa8.84□□□□□ -0.99
COL9A3-212ENST00000481800 IGKV3D-7A0A0C4DH55 119 aa8.83□□□□□ -1
COL9A3-212ENST00000481800 Q8N9P0 234 aaPredicted RBP8.83□□□□□ -1
COL9A3-212ENST00000481800 C9orf118A6NHY6 69 aa8.82□□□□□ -1
COL9A3-212ENST00000481800 MTURNQ8N3F0 131 aa8.82□□□□□ -1
COL9A3-212ENST00000481800 SPINK7P58062 85 aa8.81□□□□□ -1
COL9A3-212ENST00000481800 H3BT86 120 aa8.8□□□□□ -1
COL9A3-212ENST00000481800 Q6ZVQ6 151 aa8.79□□□□□ -1
COL9A3-212ENST00000481800 PRR15Q8IV56 129 aa8.79□□□□□ -1
COL9A3-212ENST00000481800 KRTAP9-8Q9BYQ0 159 aa8.79□□□□□ -1
COL9A3-212ENST00000481800 A0A1W2PPM0 123 aa8.78□□□□□ -1
COL9A3-212ENST00000481800 LOC105371267A0A1B0GV96 52 aa8.77□□□□□ -1.01
COL9A3-212ENST00000481800 TAX1BP3O14907 124 aa8.77□□□□□ -1.01
COL9A3-212ENST00000481800 TMEM254Q8TBM7 123 aa8.71□□□□□ -1.02
COL9A3-212ENST00000481800 MRPL34Q9BQ48 92 aaKnown RBP8.71□□□□□ -1.02
COL9A3-212ENST00000481800 MMP24-AS1A0A0U1RRL7 71 aa8.7□□□□□ -1.02
COL9A3-212ENST00000481800 WFDC13Q8IUB5 93 aa8.69□□□□□ -1.02
COL9A3-212ENST00000481800 hDV103S1A0JD37 113 aa8.68□□□□□ -1.02
COL9A3-212ENST00000481800 K7EQZ3 153 aa8.68□□□□□ -1.02
COL9A3-212ENST00000481800 BPY2O14599 106 aa8.68□□□□□ -1.02
COL9A3-212ENST00000481800 MT2AP02795 61 aa8.68□□□□□ -1.02
COL9A3-212ENST00000481800 NDUFS5O43920 106 aa8.67□□□□□ -1.02
COL9A3-212ENST00000481800 SPCS1Q9Y6A9 102 aa8.67□□□□□ -1.02
COL9A3-212ENST00000481800 KRTAP10-10P60014 251 aa8.63□□□□□ -1.03
COL9A3-212ENST00000481800 MT1FP04733 61 aa8.61□□□□□ -1.03
COL9A3-212ENST00000481800 COL5A1-AS1Q5SY13 56 aa8.59□□□□□ -1.03
COL9A3-212ENST00000481800 SMCPP49901 116 aaPredicted RBP8.57□□□□□ -1.04
COL9A3-212ENST00000481800 CASC2Q6XLA1 102 aa8.55□□□□□ -1.04
COL9A3-212ENST00000481800 Q8N9L7 120 aa8.55□□□□□ -1.04
COL9A3-212ENST00000481800 USH2AO75445 5202 aa8.53□□□□□ -1.04
COL9A3-212ENST00000481800 IGKV2D-30A0A075B6S6 120 aa8.53□□□□□ -1.04
COL9A3-212ENST00000481800 IGKV2-30P06310 120 aa8.53□□□□□ -1.04
COL9A3-212ENST00000481800 KRTAP9-3Q9BYQ3 159 aa8.52□□□□□ -1.05
COL9A3-212ENST00000481800 UBL5Q9BZL1 73 aa8.52□□□□□ -1.05
COL9A3-212ENST00000481800 HCG22E2RYF7 251 aa8.51□□□□□ -1.05
COL9A3-212ENST00000481800 K7EP34 96 aa8.5□□□□□ -1.05
COL9A3-212ENST00000481800 H1FX-AS1Q4G0G2 97 aa8.5□□□□□ -1.05
COL9A3-212ENST00000481800 Q5W150 140 aa8.5□□□□□ -1.05
COL9A3-212ENST00000481800 C7orf65Q6ZTY9 151 aa8.5□□□□□ -1.05
COL9A3-212ENST00000481800 LINC00846Q9NV44 126 aa8.49□□□□□ -1.05
COL9A3-212ENST00000481800 PRO0461Q9UI25 63 aa8.49□□□□□ -1.05
COL9A3-212ENST00000481800 LCE2BO14633 110 aa8.48□□□□□ -1.05
COL9A3-212ENST00000481800 SSPOA2VEC9 5147 aa8.45□□□□□ -1.06
COL9A3-212ENST00000481800 CXCL6P80162 114 aa8.45□□□□□ -1.06
COL9A3-212ENST00000481800 GTF2H5Q6ZYL4 71 aa8.43□□□□□ -1.06
COL9A3-212ENST00000481800 F8W1H4 67 aa8.37□□□□□ -1.07
COL9A3-212ENST00000481800 C4orf26Q17RF5 130 aa8.37□□□□□ -1.07
COL9A3-212ENST00000481800 KRTAP19-1Q8IUB9 90 aa8.36□□□□□ -1.07
COL9A3-212ENST00000481800 PCP4L1A6NKN8 68 aa8.35□□□□□ -1.07
COL9A3-212ENST00000481800 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.35□□□□□ -1.07
COL9A3-212ENST00000481800 ETDBQ3ZM63 59 aa8.32□□□□□ -1.08
COL9A3-212ENST00000481800 TP53AIP1Q9HCN2 124 aa8.3□□□□□ -1.08
COL9A3-212ENST00000481800 KRTAP9-7A8MTY7 169 aa8.27□□□□□ -1.09
COL9A3-212ENST00000481800 FCGBPQ9Y6R7 5405 aaPredicted RBP8.26□□□□□ -1.09
COL9A3-212ENST00000481800 C5orf47Q569G3 176 aa8.22□□□□□ -1.09
COL9A3-212ENST00000481800 C1orf64Q8NEQ6 169 aa8.22□□□□□ -1.09
COL9A3-212ENST00000481800 KRTAP19-6Q3LI70 58 aa8.2□□□□□ -1.1
COL9A3-212ENST00000481800 KRTAP3-1Q9BYR8 98 aa8.2□□□□□ -1.1
COL9A3-212ENST00000481800 S4R3F8 94 aa8.2□□□□□ -1.1
COL9A3-212ENST00000481800 ACYP1P07311 99 aa8.17□□□□□ -1.1
COL9A3-212ENST00000481800 FAM236AA0A1B0GUQ0 79 aa8.16□□□□□ -1.1
COL9A3-212ENST00000481800 FAM236BA0A1B0GV22 79 aa8.16□□□□□ -1.1
COL9A3-212ENST00000481800 CSAG1Q6PB30 78 aa8.16□□□□□ -1.1
COL9A3-212ENST00000481800 LCA10Q71F78 164 aa8.12□□□□□ -1.11
COL9A3-212ENST00000481800 CYP4F30PQ9H0H9 118 aa8.11□□□□□ -1.11
COL9A3-212ENST00000481800 TRAV22A0A0B4J277 110 aa8.1□□□□□ -1.11
COL9A3-212ENST00000481800 ATP5EP2Q5VTU8 51 aa8.1□□□□□ -1.11
COL9A3-212ENST00000481800 FAM240AA0A1B0GVK7 77 aa8.09□□□□□ -1.11
COL9A3-212ENST00000481800 HIST1H4AP62805 103 aaKnown RBP8.08□□□□□ -1.12
COL9A3-212ENST00000481800 LOC101927531A0A1B0GV80 90 aa8.07□□□□□ -1.12
COL9A3-212ENST00000481800 MACF1Q9UPN3 7388 aaKnown RBP8.04□□□□□ -1.12
COL9A3-212ENST00000481800 UQCRQO14949 82 aa8.02□□□□□ -1.13
COL9A3-212ENST00000481800 ATOX1O00244 68 aa7.99□□□□□ -1.13
COL9A3-212ENST00000481800 H0Y9P7 68 aa7.98□□□□□ -1.13
COL9A3-212ENST00000481800 KRTAP3-3Q9BYR6 98 aa7.97□□□□□ -1.13
COL9A3-212ENST00000481800 LINC00643Q86TS7 51 aa7.96□□□□□ -1.14
COL9A3-212ENST00000481800 KLKP1Q107X0 134 aa7.95□□□□□ -1.14
COL9A3-212ENST00000481800 Q5VV11 94 aa7.95□□□□□ -1.14
COL9A3-212ENST00000481800 SYNE2Q8WXH0 6885 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms