RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PDE6GP18545 87 aa8.14□□□□□ -1.11
HMGA1-206ENST00000478214 MTURNQ8N3F0 131 aa8.13□□□□□ -1.11
HMGA1-206ENST00000478214 A0A1B0GVX0 72 aa8.11□□□□□ -1.11
HMGA1-206ENST00000478214 H3BT86 120 aa8.11□□□□□ -1.11
HMGA1-206ENST00000478214 A0A1B0GW54 56 aa8.1□□□□□ -1.11
HMGA1-206ENST00000478214 J3KT08 172 aa8.1□□□□□ -1.11
HMGA1-206ENST00000478214 MT1HP80294 61 aa8.1□□□□□ -1.11
HMGA1-206ENST00000478214 C8orf87E5RJ46 101 aa8.08□□□□□ -1.12
HMGA1-206ENST00000478214 COX6B2Q6YFQ2 88 aa8.08□□□□□ -1.12
HMGA1-206ENST00000478214 SPCS1Q9Y6A9 102 aa8.08□□□□□ -1.12
HMGA1-206ENST00000478214 FLGP20930 4061 aaPredicted RBP8.08□□□□□ -1.12
HMGA1-206ENST00000478214 COL5A1-AS1Q5SY13 56 aa8.06□□□□□ -1.12
HMGA1-206ENST00000478214 NDUFB1O75438 58 aa8.04□□□□□ -1.12
HMGA1-206ENST00000478214 KRTAP9-2Q9BYQ4 174 aa8.04□□□□□ -1.12
HMGA1-206ENST00000478214 NREPQ16612 68 aa8.03□□□□□ -1.12
HMGA1-206ENST00000478214 A8MWP4 228 aa8.02□□□□□ -1.13
HMGA1-206ENST00000478214 IGKV3D-7A0A0C4DH55 119 aa8□□□□□ -1.13
HMGA1-206ENST00000478214 KRTAP9-6A0A140TA67 174 aa8□□□□□ -1.13
HMGA1-206ENST00000478214 SMCPP49901 116 aaPredicted RBP8□□□□□ -1.13
HMGA1-206ENST00000478214 C8orf17Q9NRJ1 99 aa7.99□□□□□ -1.13
HMGA1-206ENST00000478214 PCP4L1A6NKN8 68 aa7.98□□□□□ -1.13
HMGA1-206ENST00000478214 K7EP34 96 aa7.97□□□□□ -1.13
HMGA1-206ENST00000478214 M0R2T5 61 aa7.97□□□□□ -1.13
HMGA1-206ENST00000478214 PRR15Q8IV56 129 aa7.96□□□□□ -1.14
HMGA1-206ENST00000478214 PRO0461Q9UI25 63 aa7.96□□□□□ -1.14
HMGA1-206ENST00000478214 Q8N9P0 234 aaPredicted RBP7.94□□□□□ -1.14
HMGA1-206ENST00000478214 KRTAP10-6P60371 365 aaPredicted RBP7.93□□□□□ -1.14
HMGA1-206ENST00000478214 ZCCHC13Q8WW36 166 aaKnown RBP7.93□□□□□ -1.14
HMGA1-206ENST00000478214 LORP23490 312 aaPredicted RBP7.92□□□□□ -1.14
HMGA1-206ENST00000478214 Q6ZVQ6 151 aa7.92□□□□□ -1.14
HMGA1-206ENST00000478214 K7EQZ3 153 aa7.9□□□□□ -1.14
HMGA1-206ENST00000478214 HRES1P13985 223 aa7.9□□□□□ -1.14
HMGA1-206ENST00000478214 MMP24-AS1A0A0U1RRL7 71 aa7.89□□□□□ -1.15
HMGA1-206ENST00000478214 BPY2O14599 106 aa7.89□□□□□ -1.15
HMGA1-206ENST00000478214 MPLKIPQ8TAP9 179 aa7.88□□□□□ -1.15
HMGA1-206ENST00000478214 LCE2DQ5TA82 110 aaPredicted RBP7.86□□□□□ -1.15
HMGA1-206ENST00000478214 GTF2H5Q6ZYL4 71 aa7.86□□□□□ -1.15
HMGA1-206ENST00000478214 TMEM254Q8TBM7 123 aa7.86□□□□□ -1.15
HMGA1-206ENST00000478214 MRPL34Q9BQ48 92 aaKnown RBP7.86□□□□□ -1.15
HMGA1-206ENST00000478214 FAM236DA0A1B0GTK5 79 aa7.85□□□□□ -1.15
HMGA1-206ENST00000478214 FAM236CP0DP71 79 aa7.85□□□□□ -1.15
HMGA1-206ENST00000478214 SPINK7P58062 85 aa7.84□□□□□ -1.15
HMGA1-206ENST00000478214 RBM12B-AS1Q9P1G2 102 aa7.84□□□□□ -1.15
HMGA1-206ENST00000478214 hDV103S1A0JD37 113 aa7.83□□□□□ -1.16
HMGA1-206ENST00000478214 Q8N9L7 120 aa7.83□□□□□ -1.16
HMGA1-206ENST00000478214 LINC00846Q9NV44 126 aa7.83□□□□□ -1.16
HMGA1-206ENST00000478214 F8W1H4 67 aa7.8□□□□□ -1.16
HMGA1-206ENST00000478214 NDUFS5O43920 106 aa7.79□□□□□ -1.16
HMGA1-206ENST00000478214 UBL5Q9BZL1 73 aa7.79□□□□□ -1.16
HMGA1-206ENST00000478214 ETDBQ3ZM63 59 aa7.78□□□□□ -1.16
HMGA1-206ENST00000478214 WFDC13Q8IUB5 93 aa7.77□□□□□ -1.17
HMGA1-206ENST00000478214 CASC2Q6XLA1 102 aa7.75□□□□□ -1.17
HMGA1-206ENST00000478214 HCG22E2RYF7 251 aa7.7□□□□□ -1.18
HMGA1-206ENST00000478214 Q5W150 140 aa7.7□□□□□ -1.18
HMGA1-206ENST00000478214 KRTAP9-8Q9BYQ0 159 aa7.69□□□□□ -1.18
HMGA1-206ENST00000478214 FSIP2Q5CZC0 6907 aa7.66□□□□□ -1.18
HMGA1-206ENST00000478214 IGKV2D-30A0A075B6S6 120 aa7.66□□□□□ -1.18
HMGA1-206ENST00000478214 IGKV2-30P06310 120 aa7.66□□□□□ -1.18
HMGA1-206ENST00000478214 CXCL6P80162 114 aa7.63□□□□□ -1.19
HMGA1-206ENST00000478214 C7orf65Q6ZTY9 151 aa7.62□□□□□ -1.19
HMGA1-206ENST00000478214 CRCT1Q9UGL9 99 aa7.62□□□□□ -1.19
HMGA1-206ENST00000478214 MT2AP02795 61 aa7.61□□□□□ -1.19
HMGA1-206ENST00000478214 ACYP1P07311 99 aa7.56□□□□□ -1.2
HMGA1-206ENST00000478214 A0A1B0GV90 55 aa7.54□□□□□ -1.2
HMGA1-206ENST00000478214 FAM240AA0A1B0GVK7 77 aa7.54□□□□□ -1.2
HMGA1-206ENST00000478214 MT1FP04733 61 aa7.54□□□□□ -1.2
HMGA1-206ENST00000478214 H1FX-AS1Q4G0G2 97 aa7.54□□□□□ -1.2
HMGA1-206ENST00000478214 KRTAP10-10P60014 251 aa7.51□□□□□ -1.21
HMGA1-206ENST00000478214 C4orf26Q17RF5 130 aa7.51□□□□□ -1.21
HMGA1-206ENST00000478214 TP53AIP1Q9HCN2 124 aa7.51□□□□□ -1.21
HMGA1-206ENST00000478214 USH2AO75445 5202 aa7.5□□□□□ -1.21
HMGA1-206ENST00000478214 ATP5EP2Q5VTU8 51 aa7.48□□□□□ -1.21
HMGA1-206ENST00000478214 KRTAP9-3Q9BYQ3 159 aa7.45□□□□□ -1.22
HMGA1-206ENST00000478214 HIST1H4AP62805 103 aaKnown RBP7.44□□□□□ -1.22
HMGA1-206ENST00000478214 KRTAP3-1Q9BYR8 98 aa7.41□□□□□ -1.22
HMGA1-206ENST00000478214 LINC00643Q86TS7 51 aa7.4□□□□□ -1.22
HMGA1-206ENST00000478214 LCE2BO14633 110 aa7.39□□□□□ -1.23
HMGA1-206ENST00000478214 C1orf64Q8NEQ6 169 aa7.38□□□□□ -1.23
HMGA1-206ENST00000478214 SSPOA2VEC9 5147 aa7.37□□□□□ -1.23
HMGA1-206ENST00000478214 A0A087WVE0 104 aa7.37□□□□□ -1.23
HMGA1-206ENST00000478214 TRAV22A0A0B4J277 110 aa7.37□□□□□ -1.23
HMGA1-206ENST00000478214 CYP4F30PQ9H0H9 118 aa7.36□□□□□ -1.23
HMGA1-206ENST00000478214 LOC101927531A0A1B0GV80 90 aa7.32□□□□□ -1.24
HMGA1-206ENST00000478214 UQCRQO14949 82 aa7.32□□□□□ -1.24
HMGA1-206ENST00000478214 C5orf47Q569G3 176 aa7.31□□□□□ -1.24
HMGA1-206ENST00000478214 S4R3F8 94 aa7.31□□□□□ -1.24
HMGA1-206ENST00000478214 H0Y9P7 68 aa7.29□□□□□ -1.24
HMGA1-206ENST00000478214 J3QR89 54 aa7.28□□□□□ -1.24
HMGA1-206ENST00000478214 LCA10Q71F78 164 aa7.27□□□□□ -1.25
HMGA1-206ENST00000478214 ATOX1O00244 68 aa7.26□□□□□ -1.25
HMGA1-206ENST00000478214 CSAG1Q6PB30 78 aa7.24□□□□□ -1.25
HMGA1-206ENST00000478214 OCR1Q9BZK8 76 aa7.22□□□□□ -1.25
HMGA1-206ENST00000478214 FCGBPQ9Y6R7 5405 aaPredicted RBP7.22□□□□□ -1.25
HMGA1-206ENST00000478214 KRTAP19-1Q8IUB9 90 aa7.21□□□□□ -1.26
HMGA1-206ENST00000478214 LINC00208Q96KT6 92 aa7.19□□□□□ -1.26
HMGA1-206ENST00000478214 KRTAP3-3Q9BYR6 98 aa7.19□□□□□ -1.26
HMGA1-206ENST00000478214 FAM236AA0A1B0GUQ0 79 aa7.16□□□□□ -1.26
HMGA1-206ENST00000478214 FAM236BA0A1B0GV22 79 aa7.16□□□□□ -1.26
HMGA1-206ENST00000478214 MP68P56378 58 aa7.15□□□□□ -1.26
HMGA1-206ENST00000478214 KLKP1Q107X0 134 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms