RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NDUFS5O43920 106 aa3.8□□□□□ -1.8
CCDC88A-213ENST00000476903 CCDC179H3BU77 68 aa3.79□□□□□ -1.8
CCDC88A-213ENST00000476903 PCP2Q8IVA1 136 aa3.79□□□□□ -1.8
CCDC88A-213ENST00000476903 LIMD2Q9BT23 127 aa3.79□□□□□ -1.8
CCDC88A-213ENST00000476903 FAT4Q6V0I7 4981 aa3.79□□□□□ -1.8
CCDC88A-213ENST00000476903 TRAV13-2A0A0B4J235 113 aa3.78□□□□□ -1.8
CCDC88A-213ENST00000476903 TEX49A0A1B0GTD5 131 aa3.78□□□□□ -1.8
CCDC88A-213ENST00000476903 ASB16-AS1Q495Z4 193 aa3.78□□□□□ -1.8
CCDC88A-213ENST00000476903 MUSTN1Q8IVN3 82 aa3.78□□□□□ -1.8
CCDC88A-213ENST00000476903 DEFB105AQ8NG35 78 aa3.78□□□□□ -1.8
CCDC88A-213ENST00000476903 HIST1H4GQ99525 98 aa3.78□□□□□ -1.8
CCDC88A-213ENST00000476903 PSPHP1O15172 72 aa3.77□□□□□ -1.81
CCDC88A-213ENST00000476903 Q1RN00 199 aa3.77□□□□□ -1.81
CCDC88A-213ENST00000476903 KTN1-AS1Q86SY8 53 aa3.77□□□□□ -1.81
CCDC88A-213ENST00000476903 RBM12B-AS1Q9P1G2 102 aa3.77□□□□□ -1.81
CCDC88A-213ENST00000476903 MUC17Q685J3 4493 aa3.77□□□□□ -1.81
CCDC88A-213ENST00000476903 TAX1BP3O14907 124 aa3.76□□□□□ -1.81
CCDC88A-213ENST00000476903 NHP2Q9NX24 153 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-213ENST00000476903 IGLV5-48A0A075B6I7 105 aa3.75□□□□□ -1.81
CCDC88A-213ENST00000476903 SMIM26A0A096LP01 95 aa3.75□□□□□ -1.81
CCDC88A-213ENST00000476903 H7C2G1 150 aa3.75□□□□□ -1.81
CCDC88A-213ENST00000476903 SNCGO76070 127 aa3.75□□□□□ -1.81
CCDC88A-213ENST00000476903 SMIM11BQ8TCY0 68 aa3.75□□□□□ -1.81
CCDC88A-213ENST00000476903 TRACP01848 142 aa3.74□□□□□ -1.81
CCDC88A-213ENST00000476903 LINC01547P58512 204 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-213ENST00000476903 SMIM29Q86T20 159 aa3.74□□□□□ -1.81
CCDC88A-213ENST00000476903 FAM236AA0A1B0GUQ0 79 aa3.73□□□□□ -1.81
CCDC88A-213ENST00000476903 FAM236BA0A1B0GV22 79 aa3.73□□□□□ -1.81
CCDC88A-213ENST00000476903 NAA38Q9BRA0 125 aaKnown RBP3.73□□□□□ -1.81
CCDC88A-213ENST00000476903 F8WEM9 126 aa3.72□□□□□ -1.81
CCDC88A-213ENST00000476903 FABP2P12104 132 aa3.72□□□□□ -1.81
CCDC88A-213ENST00000476903 MP68P56378 58 aa3.72□□□□□ -1.81
CCDC88A-213ENST00000476903 BRK1Q8WUW1 75 aa3.72□□□□□ -1.81
CCDC88A-213ENST00000476903 SERP1Q9Y6X1 66 aa3.72□□□□□ -1.81
CCDC88A-213ENST00000476903 hADV29S1A0JD25 119 aa3.71□□□□□ -1.82
CCDC88A-213ENST00000476903 H3BMG7 143 aa3.71□□□□□ -1.82
CCDC88A-213ENST00000476903 LINC00575Q6W349 94 aa3.71□□□□□ -1.82
CCDC88A-213ENST00000476903 KRTAP4-1Q9BYQ7 146 aa3.71□□□□□ -1.82
CCDC88A-213ENST00000476903 FSIP2Q5CZC0 6907 aa3.71□□□□□ -1.82
CCDC88A-213ENST00000476903 TRBV20-1A0A075B6N2 111 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 A0A0G2JQZ4 141 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 C9orf92A6NGG3 77 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 MT-ATP8P03928 68 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 SCGB1C2P0DMR2 95 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 COX8AP10176 69 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 Q6ZQY7 126 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 TEN1Q86WV5 123 aa3.7□□□□□ -1.82
CCDC88A-213ENST00000476903 H3BT86 120 aa3.69□□□□□ -1.82
CCDC88A-213ENST00000476903 TCL1BO95988 128 aa3.69□□□□□ -1.82
CCDC88A-213ENST00000476903 ATP5EP56381 51 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-213ENST00000476903 BVES-AS1Q5T3Y7 98 aa3.69□□□□□ -1.82
CCDC88A-213ENST00000476903 LCA10Q71F78 164 aa3.69□□□□□ -1.82
CCDC88A-213ENST00000476903 SPCS1Q9Y6A9 102 aa3.69□□□□□ -1.82
CCDC88A-213ENST00000476903 A0A1B0GW54 56 aa3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 COX7CP15954 63 aa3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 SPATA45Q537H7 98 aa3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 PCOTHQ58A44 107 aa3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 Q6JHZ5 121 aa3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 PPDPFLQ8WWR9 84 aa3.68□□□□□ -1.82
CCDC88A-213ENST00000476903 IGLV8-61A0A075B6I0 122 aa3.67□□□□□ -1.82
CCDC88A-213ENST00000476903 A0A1W2PPM0 123 aa3.67□□□□□ -1.82
CCDC88A-213ENST00000476903 LST1O00453 97 aa3.67□□□□□ -1.82
CCDC88A-213ENST00000476903 CLEC2BQ92478 149 aa3.67□□□□□ -1.82
CCDC88A-213ENST00000476903 IGHV6-1A0A0B4J1U7 121 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 TRBV7-7A0A0K0K1E9 115 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 A8MUN3 132 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 CFC1BP0CG36 223 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 CFC1P0CG37 223 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 CXCL6P80162 114 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 LCE3AQ5TA76 89 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 IGFL1Q6UW32 110 aa3.66□□□□□ -1.82
CCDC88A-213ENST00000476903 A0A0B4J2C4 111 aa3.65□□□□□ -1.83
CCDC88A-213ENST00000476903 HIGD1BQ9P298 99 aa3.65□□□□□ -1.83
CCDC88A-213ENST00000476903 H0YGX0 51 aa3.64□□□□□ -1.83
CCDC88A-213ENST00000476903 ATOX1O00244 68 aa3.64□□□□□ -1.83
CCDC88A-213ENST00000476903 RPL37P61927 97 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-213ENST00000476903 H3BUT2 72 aa3.63□□□□□ -1.83
CCDC88A-213ENST00000476903 C2orf91Q6ZV80 131 aa3.63□□□□□ -1.83
CCDC88A-213ENST00000476903 TMEM256-PLSCR3K7ERE1 68 aa3.62□□□□□ -1.83
CCDC88A-213ENST00000476903 CEND1Q8N111 149 aa3.62□□□□□ -1.83
CCDC88A-213ENST00000476903 CRCT1Q9UGL9 99 aa3.62□□□□□ -1.83
CCDC88A-213ENST00000476903 KRTAP19-2Q3LHN2 52 aa3.61□□□□□ -1.83
CCDC88A-213ENST00000476903 FAM218AQ96MZ4 157 aa3.61□□□□□ -1.83
CCDC88A-213ENST00000476903 PRO1854Q9UHT4 67 aa3.61□□□□□ -1.83
CCDC88A-213ENST00000476903 LINC00313P59037 77 aa3.6□□□□□ -1.83
CCDC88A-213ENST00000476903 OBSCN-AS1Q96MR7 158 aa3.6□□□□□ -1.83
CCDC88A-213ENST00000476903 HIST1H4AP62805 103 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-213ENST00000476903 MT1HP80294 61 aa3.59□□□□□ -1.83
CCDC88A-213ENST00000476903 FXYD2P54710 66 aa3.58□□□□□ -1.84
CCDC88A-213ENST00000476903 ETDBQ3ZM63 59 aa3.58□□□□□ -1.84
CCDC88A-213ENST00000476903 ATP11AUNQ6ZP68 121 aa3.58□□□□□ -1.84
CCDC88A-213ENST00000476903 C7orf65Q6ZTY9 151 aa3.58□□□□□ -1.84
CCDC88A-213ENST00000476903 A0A087WSZ3 146 aa3.57□□□□□ -1.84
CCDC88A-213ENST00000476903 H3BQ85 93 aa3.57□□□□□ -1.84
CCDC88A-213ENST00000476903 DNAL4O96015 105 aa3.57□□□□□ -1.84
CCDC88A-213ENST00000476903 ACYP1P07311 99 aa3.57□□□□□ -1.84
CCDC88A-213ENST00000476903 LINC01554Q52M75 96 aa3.57□□□□□ -1.84
CCDC88A-213ENST00000476903 COX6B2Q6YFQ2 88 aa3.57□□□□□ -1.84
CCDC88A-213ENST00000476903 NDUFC1O43677 76 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms