RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 HMGN2P05204 90 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 GLI2P10070 1586 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 PPP3R1P63098 170 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 PMCHL1Q16048 86 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 NREPQ16612 68 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 ETDBQ3ZM63 59 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 DDX60LQ5H9U9 1706 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 UBR3Q6ZT12 1888 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 PFDN5Q99471 154 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 PMCHL2Q9BQD1 86 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 C2orf88Q9BSF0 95 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 MAP3K4Q9Y6R4 1608 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 RALGAPBQ86X10 1494 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 NAIPQ13075 1403 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 DEFB131BA0A096LNP1 70 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 MYMXA0A1B0GTQ4 84 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 A0A1B0GUT8 65 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 FAM24AA6NFZ4 105 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 LINC01546A6NGU7 62 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 ATP6V1G2-DDX39BF2Z307 99 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 J3QR89 54 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 S100A1P23297 94 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 FAUP35544 74 aaKnown RBP-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 RPS29P62273 56 aaKnown RBP-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 DEFB136Q30KP8 78 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 TMEM203Q969S6 136 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 SPANXA1Q9NS26 97 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 CEP350Q5VT06 3117 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 EPRSP07814 1512 aaKnown RBP-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 MYO3AQ8NEV4 1616 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 CCDC141Q6ZP82 1450 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 ARHGAP35Q9NRY4 1499 aa-0.86□□□□□ -2.55
SCN1A-205ENST00000473295 INO80Q9ULG1 1556 aaPredicted RBP-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 LMO7Q8WWI1 1683 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 CEP162Q5TB80 1403 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 KIAA0586Q9BVV6 1533 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 TMEM218A2RU14 115 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 UQCRHP07919 91 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 ATP5EP56381 51 aaPredicted RBP-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 S100A10P60903 97 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 MRPS10P82664 201 aaKnown RBP-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 DEFB121Q5J5C9 76 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 ENHOQ6UWT2 76 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 FAM107BQ9H098 131 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 ANKRD26Q9UPS8 1709 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 CCDC88BA6NC98 1476 aa-0.87□□□□□ -2.55
SCN1A-205ENST00000473295 SPTAN1Q13813 2472 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 AKAP12Q02952 1782 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 UNC80Q8N2C7 3258 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 FAM25AB3EWG3 89 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 FAM25CB3EWG5 89 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 FAM25GB3EWG6 89 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 UMAD1C9J7I0 102 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 SPART-AS1P0CW21 52 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 GNG4P50150 75 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 HMGN3Q15651 99 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 COL5A1-AS1Q5SY13 56 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 MINOS1Q5TGZ0 78 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 PYDC1Q8WXC3 89 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 KAAG1Q9UBP8 84 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 RABAC1Q9UI14 185 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 AP4S1Q9Y587 144 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 V9GYQ6 96 aa-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 KTN1Q86UP2 1357 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-205ENST00000473295 CFAP47Q6ZTR5 3102 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 DNAH12Q6ZR08 3092 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 CENPEQ02224 2701 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 M0QY20 66 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 ATOX1O00244 68 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 SMIM13P0DJ93 91 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 FCER1GP30273 86 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 PLGLAQ15195 96 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 CCDC58Q4VC31 144 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 RPL13AP3Q6NVV1 102 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 SVBPQ8N300 66 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 TCEAL7Q9BRU2 100 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 C6orf48Q9UBA6 75 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 PLIN4Q96Q06 1357 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 CLTCQ00610 1675 aaKnown RBP-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 CFAP43Q8NDM7 1665 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 FAM208AQ9UK61 1670 aaKnown RBP-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 DNAH14Q0VDD8 3507 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 MYO5CQ9NQX4 1742 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 ABCC6O95255 1503 aa-0.89□□□□□ -2.55
SCN1A-205ENST00000473295 CEBPZOSA8MTT3 80 aa-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 NDUFC1O43677 76 aa-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 PFDN1O60925 122 aa-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 POLR2KP53803 58 aaKnown RBP-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 LZICQ8WZA0 190 aa-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 ABCC2Q92887 1545 aa-0.9□□□□□ -2.55
SCN1A-205ENST00000473295 TTC37Q6PGP7 1564 aa-0.91□□□□□ -2.55
SCN1A-205ENST00000473295 CCNB3Q8WWL7 1395 aa-0.91□□□□□ -2.55
SCN1A-205ENST00000473295 ETDCA0A1B0GVM5 59 aa-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 RBP2P50120 134 aa-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 LINC00643Q86TS7 51 aa-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 VAMP8Q9BV40 100 aa-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 GNG8Q9UK08 70 aa-0.91□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms