RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 FAM236AA0A1B0GUQ0 79 aa5.22□□□□□ -1.57
UPF2-202ENST00000357604 FAM236BA0A1B0GV22 79 aa5.22□□□□□ -1.57
UPF2-202ENST00000357604 C7orf65Q6ZTY9 151 aa5.22□□□□□ -1.57
UPF2-202ENST00000357604 LINC00472Q9H8W2 130 aa5.22□□□□□ -1.57
UPF2-202ENST00000357604 ZCCHC13Q8WW36 166 aaKnown RBP5.21□□□□□ -1.58
UPF2-202ENST00000357604 STARD9Q9P2P6 4700 aa5.21□□□□□ -1.58
UPF2-202ENST00000357604 Q75L30 129 aa5.2□□□□□ -1.58
UPF2-202ENST00000357604 TRAV22A0A0B4J277 110 aa5.19□□□□□ -1.58
UPF2-202ENST00000357604 KRTAP10-4P60372 401 aaPredicted RBP5.19□□□□□ -1.58
UPF2-202ENST00000357604 RPL37P61927 97 aaKnown RBP5.19□□□□□ -1.58
UPF2-202ENST00000357604 Q8N9L7 120 aa5.19□□□□□ -1.58
UPF2-202ENST00000357604 TRAV7A0A075B6U4 112 aa5.17□□□□□ -1.58
UPF2-202ENST00000357604 DNAH2Q9P225 4427 aa5.16□□□□□ -1.58
UPF2-202ENST00000357604 C1orf64Q8NEQ6 169 aa5.15□□□□□ -1.58
UPF2-202ENST00000357604 BRK1Q8WUW1 75 aa5.15□□□□□ -1.58
UPF2-202ENST00000357604 LINC00208Q96KT6 92 aa5.15□□□□□ -1.59
UPF2-202ENST00000357604 PCOTHQ58A44 107 aa5.15□□□□□ -1.59
UPF2-202ENST00000357604 M0R2T5 61 aa5.14□□□□□ -1.59
UPF2-202ENST00000357604 NDUFC1O43677 76 aa5.14□□□□□ -1.59
UPF2-202ENST00000357604 DYNC1H1Q14204 4646 aaKnown RBP5.14□□□□□ -1.59
UPF2-202ENST00000357604 DNAH8Q96JB1 4490 aa5.14□□□□□ -1.59
UPF2-202ENST00000357604 RYR2Q92736 4967 aa5.13□□□□□ -1.59
UPF2-202ENST00000357604 KRTAP4-5Q9BYR2 181 aa5.13□□□□□ -1.59
UPF2-202ENST00000357604 MMP24-AS1A0A0U1RRL7 71 aa5.12□□□□□ -1.59
UPF2-202ENST00000357604 MT-ATP8P03928 68 aa5.12□□□□□ -1.59
UPF2-202ENST00000357604 SERP2Q8N6R1 65 aa5.11□□□□□ -1.59
UPF2-202ENST00000357604 K7ERS5 55 aa5.11□□□□□ -1.59
UPF2-202ENST00000357604 MT1HL1P0DM35 61 aa5.1□□□□□ -1.59
UPF2-202ENST00000357604 SACSQ9NZJ4 4579 aa5.1□□□□□ -1.59
UPF2-202ENST00000357604 KRTAP13-3Q3SY46 172 aa5.1□□□□□ -1.59
UPF2-202ENST00000357604 A0A087WVE0 104 aa5.1□□□□□ -1.59
UPF2-202ENST00000357604 ATP5EP56381 51 aaPredicted RBP5.1□□□□□ -1.59
UPF2-202ENST00000357604 XP32Q5T750 250 aa5.09□□□□□ -1.59
UPF2-202ENST00000357604 C20orf197Q8N268 126 aa5.08□□□□□ -1.6
UPF2-202ENST00000357604 FAT2Q9NYQ8 4349 aa5.07□□□□□ -1.6
UPF2-202ENST00000357604 PRO0628Q9UI54 55 aa5.07□□□□□ -1.6
UPF2-202ENST00000357604 C20orf166-AS1Q96NR2 134 aa5.06□□□□□ -1.6
UPF2-202ENST00000357604 A8MUU9 505 aa5.05□□□□□ -1.6
UPF2-202ENST00000357604 ACYP2P14621 99 aa5.05□□□□□ -1.6
UPF2-202ENST00000357604 H3BS24 57 aa5.05□□□□□ -1.6
UPF2-202ENST00000357604 A8MUN3 132 aa5.04□□□□□ -1.6
UPF2-202ENST00000357604 SPINK7P58062 85 aa5.04□□□□□ -1.6
UPF2-202ENST00000357604 PMAIP1Q13794 54 aa5.03□□□□□ -1.6
UPF2-202ENST00000357604 TGP01266 2768 aa5.03□□□□□ -1.6
UPF2-202ENST00000357604 BIRC6Q9NR09 4857 aa5.03□□□□□ -1.6
UPF2-202ENST00000357604 PRR15LQ9BU68 103 aa5.02□□□□□ -1.61
UPF2-202ENST00000357604 SERP1Q9Y6X1 66 aa5.02□□□□□ -1.61
UPF2-202ENST00000357604 COX7CP15954 63 aa5.01□□□□□ -1.61
UPF2-202ENST00000357604 FRAS1Q86XX4 4008 aa5□□□□□ -1.61
UPF2-202ENST00000357604 Q8N9P0 234 aaPredicted RBP4.99□□□□□ -1.61
UPF2-202ENST00000357604 DNAH5Q8TE73 4624 aa4.99□□□□□ -1.61
UPF2-202ENST00000357604 Q5W150 140 aa4.99□□□□□ -1.61
UPF2-202ENST00000357604 S4R3F8 94 aa4.99□□□□□ -1.61
UPF2-202ENST00000357604 SMIM26A0A096LP01 95 aa4.99□□□□□ -1.61
UPF2-202ENST00000357604 SNURFQ9Y675 71 aa4.99□□□□□ -1.61
UPF2-202ENST00000357604 PKHD1L1Q86WI1 4243 aa4.98□□□□□ -1.61
UPF2-202ENST00000357604 LYSTQ99698 3801 aa4.96□□□□□ -1.62
UPF2-202ENST00000357604 HECTD4Q9Y4D8 3996 aa4.95□□□□□ -1.62
UPF2-202ENST00000357604 CSAG1Q6PB30 78 aa4.94□□□□□ -1.62
UPF2-202ENST00000357604 LRP1BQ9NZR2 4599 aa4.94□□□□□ -1.62
UPF2-202ENST00000357604 KMT2AQ03164 3969 aa4.94□□□□□ -1.62
UPF2-202ENST00000357604 VPS13BQ7Z7G8 4022 aa4.93□□□□□ -1.62
UPF2-202ENST00000357604 H1FX-AS1Q4G0G2 97 aa4.93□□□□□ -1.62
UPF2-202ENST00000357604 CYP4F30PQ9H0H9 118 aa4.93□□□□□ -1.62
UPF2-202ENST00000357604 NOTCH2NLQ7Z3S9 236 aa4.91□□□□□ -1.62
UPF2-202ENST00000357604 OCR1Q9BZK8 76 aa4.88□□□□□ -1.63
UPF2-202ENST00000357604 RPS28P62857 69 aaKnown RBP4.88□□□□□ -1.63
UPF2-202ENST00000357604 APOBP04114 4563 aaKnown RBP4.88□□□□□ -1.63
UPF2-202ENST00000357604 HRES1P13985 223 aa4.87□□□□□ -1.63
UPF2-202ENST00000357604 C4orf26Q17RF5 130 aa4.87□□□□□ -1.63
UPF2-202ENST00000357604 SPANXA2-OT1Q8N9U9 137 aa4.87□□□□□ -1.63
UPF2-202ENST00000357604 KRTAP16-1A8MUX0 517 aa4.87□□□□□ -1.63
UPF2-202ENST00000357604 HYDINQ4G0P3 5121 aa4.87□□□□□ -1.63
UPF2-202ENST00000357604 A6NED7 52 aa4.87□□□□□ -1.63
UPF2-202ENST00000357604 COL7A1Q02388 2944 aa4.86□□□□□ -1.63
UPF2-202ENST00000357604 PKD1P98161 4303 aa4.85□□□□□ -1.63
UPF2-202ENST00000357604 RYR1P21817 5038 aa4.85□□□□□ -1.63
UPF2-202ENST00000357604 CSMD3Q7Z407 3707 aa4.83□□□□□ -1.64
UPF2-202ENST00000357604 HSPG2P98160 4391 aa4.8□□□□□ -1.64
UPF2-202ENST00000357604 MPLKIPQ8TAP9 179 aa4.79□□□□□ -1.64
UPF2-202ENST00000357604 KLKP1Q107X0 134 aa4.79□□□□□ -1.64
UPF2-202ENST00000357604 PKHD1P08F94 4074 aa4.77□□□□□ -1.65
UPF2-202ENST00000357604 COA5Q86WW8 74 aa4.77□□□□□ -1.65
UPF2-202ENST00000357604 A0A1B0GU69 56 aa4.76□□□□□ -1.65
UPF2-202ENST00000357604 CCDC179H3BU77 68 aa4.76□□□□□ -1.65
UPF2-202ENST00000357604 KRTAP17-1Q9BYP8 105 aa4.76□□□□□ -1.65
UPF2-202ENST00000357604 FLG2Q5D862 2391 aaPredicted RBP4.75□□□□□ -1.65
UPF2-202ENST00000357604 LCA10Q71F78 164 aa4.74□□□□□ -1.65
UPF2-202ENST00000357604 HERC2O95714 4834 aa4.74□□□□□ -1.65
UPF2-202ENST00000357604 DMAC1Q96GE9 116 aa4.74□□□□□ -1.65
UPF2-202ENST00000357604 RYR3Q15413 4870 aa4.73□□□□□ -1.65
UPF2-202ENST00000357604 FAT1Q14517 4588 aa4.73□□□□□ -1.65
UPF2-202ENST00000357604 KMT2CQ8NEZ4 4911 aaKnown RBP4.69□□□□□ -1.66
UPF2-202ENST00000357604 DMBT1Q9UGM3 2413 aaPredicted RBP4.68□□□□□ -1.66
UPF2-202ENST00000357604 KTN1-AS1Q86SY8 53 aa4.68□□□□□ -1.66
UPF2-202ENST00000357604 CRIPTQ9P021 101 aa4.66□□□□□ -1.66
UPF2-202ENST00000357604 PLAC4Q8WY50 150 aa4.65□□□□□ -1.67
UPF2-202ENST00000357604 R4GN34 69 aa4.64□□□□□ -1.67
UPF2-202ENST00000357604 ADM2Q7Z4H4 148 aa4.64□□□□□ -1.67
UPF2-202ENST00000357604 FAT3Q8TDW7 4589 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms