RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 Q6ZRX8 168 aa3.48□□□□□ -1.85
CSDE1-202ENST00000339438 A0A0G2JQZ4 141 aa3.48□□□□□ -1.85
CSDE1-202ENST00000339438 A0A1W2PNN7 141 aa3.48□□□□□ -1.85
CSDE1-202ENST00000339438 C15orf56Q8N910 161 aa3.48□□□□□ -1.85
CSDE1-202ENST00000339438 H0Y9P7 68 aa3.47□□□□□ -1.85
CSDE1-202ENST00000339438 LPAP08519 4548 aa3.47□□□□□ -1.85
CSDE1-202ENST00000339438 MP68P56378 58 aa3.47□□□□□ -1.85
CSDE1-202ENST00000339438 WFDC13Q8IUB5 93 aa3.47□□□□□ -1.85
CSDE1-202ENST00000339438 NKAPP1Q8N9T2 125 aa3.47□□□□□ -1.85
CSDE1-202ENST00000339438 RPL37AP61513 92 aaKnown RBP3.46□□□□□ -1.86
CSDE1-202ENST00000339438 RTL8CO15255 209 aa3.46□□□□□ -1.86
CSDE1-202ENST00000339438 LINC01554Q52M75 96 aa3.46□□□□□ -1.86
CSDE1-202ENST00000339438 Q6ZRN7 208 aaPredicted RBP3.46□□□□□ -1.86
CSDE1-202ENST00000339438 UBE2DNLQ8IWF7 75 aa3.46□□□□□ -1.86
CSDE1-202ENST00000339438 ASB16-AS1Q495Z4 193 aa3.46□□□□□ -1.86
CSDE1-202ENST00000339438 CASC10Q5T4H9 136 aa3.45□□□□□ -1.86
CSDE1-202ENST00000339438 Q6ZR54 194 aa3.45□□□□□ -1.86
CSDE1-202ENST00000339438 SPAG11AQ6PDA7 123 aa3.45□□□□□ -1.86
CSDE1-202ENST00000339438 IGFL1Q6UW32 110 aa3.45□□□□□ -1.86
CSDE1-202ENST00000339438 LINC00476Q8WZB0 136 aa3.45□□□□□ -1.86
CSDE1-202ENST00000339438 SRRM2Q9UQ35 2752 aaKnown RBP3.45□□□□□ -1.86
CSDE1-202ENST00000339438 IGLV8-61A0A075B6I0 122 aa3.44□□□□□ -1.86
CSDE1-202ENST00000339438 DHRS4-AS1Q9P1J3 65 aa3.44□□□□□ -1.86
CSDE1-202ENST00000339438 FLGP20930 4061 aaPredicted RBP3.44□□□□□ -1.86
CSDE1-202ENST00000339438 HRES1P13985 223 aa3.44□□□□□ -1.86
CSDE1-202ENST00000339438 LELP1Q5T871 98 aa3.44□□□□□ -1.86
CSDE1-202ENST00000339438 PLA2G2DQ9UNK4 145 aa3.43□□□□□ -1.86
CSDE1-202ENST00000339438 A0A087X002 238 aa3.43□□□□□ -1.86
CSDE1-202ENST00000339438 LINC00472Q9H8W2 130 aa3.43□□□□□ -1.86
CSDE1-202ENST00000339438 CAMK2N2Q96S95 79 aa3.43□□□□□ -1.86
CSDE1-202ENST00000339438 FAM168BA1KXE4 195 aa3.42□□□□□ -1.86
CSDE1-202ENST00000339438 APLNQ9ULZ1 77 aa3.42□□□□□ -1.86
CSDE1-202ENST00000339438 MMP24-AS1A0A0U1RRL7 71 aa3.42□□□□□ -1.86
CSDE1-202ENST00000339438 CASC2Q6XLA1 102 aa3.42□□□□□ -1.86
CSDE1-202ENST00000339438 RPL37AP8A6NKH3 93 aa3.41□□□□□ -1.86
CSDE1-202ENST00000339438 TLX1NBP0CAT3 122 aa3.4□□□□□ -1.86
CSDE1-202ENST00000339438 A0A087WSZ3 146 aa3.4□□□□□ -1.87
CSDE1-202ENST00000339438 A8MWP4 228 aa3.4□□□□□ -1.87
CSDE1-202ENST00000339438 IGKV2-24A0A0C4DH68 120 aa3.39□□□□□ -1.87
CSDE1-202ENST00000339438 LY6G6CO95867 125 aa3.39□□□□□ -1.87
CSDE1-202ENST00000339438 Q96NJ1 140 aa3.38□□□□□ -1.87
CSDE1-202ENST00000339438 KRTAP1-5Q9BYS1 174 aa3.38□□□□□ -1.87
CSDE1-202ENST00000339438 PCOTHQ58A44 107 aa3.37□□□□□ -1.87
CSDE1-202ENST00000339438 SPATA8Q6RVD6 105 aa3.37□□□□□ -1.87
CSDE1-202ENST00000339438 KRTAP13-3Q3SY46 172 aa3.36□□□□□ -1.87
CSDE1-202ENST00000339438 H3BNG1 76 aa3.35□□□□□ -1.87
CSDE1-202ENST00000339438 LINC01556Q5JQF7 62 aa3.35□□□□□ -1.87
CSDE1-202ENST00000339438 NUPR2A6NF83 97 aa3.35□□□□□ -1.87
CSDE1-202ENST00000339438 DNAH10OSP0CZ25 163 aa3.35□□□□□ -1.87
CSDE1-202ENST00000339438 KRTAP4-5Q9BYR2 181 aa3.35□□□□□ -1.87
CSDE1-202ENST00000339438 CSAG1Q6PB30 78 aa3.34□□□□□ -1.88
CSDE1-202ENST00000339438 SPRR1BP22528 89 aa3.33□□□□□ -1.88
CSDE1-202ENST00000339438 Q6ZSA8 131 aa3.33□□□□□ -1.88
CSDE1-202ENST00000339438 REG3GQ6UW15 175 aa3.33□□□□□ -1.88
CSDE1-202ENST00000339438 KRTAP11-1Q8IUC1 163 aa3.33□□□□□ -1.88
CSDE1-202ENST00000339438 TP53AIP1Q9HCN2 124 aa3.32□□□□□ -1.88
CSDE1-202ENST00000339438 ZNF706Q9Y5V0 76 aaPredicted RBP3.32□□□□□ -1.88
CSDE1-202ENST00000339438 UBR4Q5T4S7 5183 aa3.32□□□□□ -1.88
CSDE1-202ENST00000339438 NBDYA0A0U1RRE5 68 aa3.31□□□□□ -1.88
CSDE1-202ENST00000339438 ZNF861PO60384 105 aa3.31□□□□□ -1.88
CSDE1-202ENST00000339438 CHTF8P0CG12 524 aa3.31□□□□□ -1.88
CSDE1-202ENST00000339438 PRLHP81277 87 aa3.31□□□□□ -1.88
CSDE1-202ENST00000339438 Q5W150 140 aa3.3□□□□□ -1.88
CSDE1-202ENST00000339438 NOTCH2NLQ7Z3S9 236 aa3.3□□□□□ -1.88
CSDE1-202ENST00000339438 RETNLBQ9BQ08 111 aa3.29□□□□□ -1.88
CSDE1-202ENST00000339438 C8orf17Q9NRJ1 99 aa3.29□□□□□ -1.88
CSDE1-202ENST00000339438 A0A0A0MQY5 61 aa3.29□□□□□ -1.88
CSDE1-202ENST00000339438 DMAC1Q96GE9 116 aa3.28□□□□□ -1.88
CSDE1-202ENST00000339438 H0Y9J4 135 aa3.27□□□□□ -1.89
CSDE1-202ENST00000339438 ROMO1P60602 79 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 C1orf134Q5TEV5 83 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 A0A096LNI7 61 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 MIR22HGQ0VDD5 57 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 MUC2Q02817 5179 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 P0C880 135 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 KRTAP13-1Q8IUC0 172 aa3.26□□□□□ -1.89
CSDE1-202ENST00000339438 MRPL34Q9BQ48 92 aaKnown RBP3.25□□□□□ -1.89
CSDE1-202ENST00000339438 A0A1B0GVX0 72 aa3.25□□□□□ -1.89
CSDE1-202ENST00000339438 LRP2P98164 4655 aa3.24□□□□□ -1.89
CSDE1-202ENST00000339438 ACYP2P14621 99 aa3.24□□□□□ -1.89
CSDE1-202ENST00000339438 A0A1B0GU69 56 aa3.24□□□□□ -1.89
CSDE1-202ENST00000339438 PANO1I0J062 215 aa3.24□□□□□ -1.89
CSDE1-202ENST00000339438 A0A087WTM6 91 aa3.23□□□□□ -1.89
CSDE1-202ENST00000339438 UQCR11O14957 56 aa3.23□□□□□ -1.89
CSDE1-202ENST00000339438 IGLV5-52A0A0A0MRZ9 124 aa3.23□□□□□ -1.89
CSDE1-202ENST00000339438 A8MUU9 505 aa3.22□□□□□ -1.89
CSDE1-202ENST00000339438 KRTAP25-1Q3LHN0 102 aa3.22□□□□□ -1.89
CSDE1-202ENST00000339438 RNF213Q63HN8 5207 aa3.22□□□□□ -1.89
CSDE1-202ENST00000339438 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.22□□□□□ -1.89
CSDE1-202ENST00000339438 KRTAP10-2P60368 255 aa3.21□□□□□ -1.9
CSDE1-202ENST00000339438 C14orf177Q52M58 125 aa3.21□□□□□ -1.9
CSDE1-202ENST00000339438 IGHV6-1A0A0B4J1U7 121 aa3.21□□□□□ -1.9
CSDE1-202ENST00000339438 IGLV7-43P04211 117 aa3.2□□□□□ -1.9
CSDE1-202ENST00000339438 LINC00483Q53H64 154 aa3.2□□□□□ -1.9
CSDE1-202ENST00000339438 LINC00304Q8N9R0 145 aa3.19□□□□□ -1.9
CSDE1-202ENST00000339438 CDK2AP2O75956 126 aa3.19□□□□□ -1.9
CSDE1-202ENST00000339438 MT1HL1P0DM35 61 aa3.18□□□□□ -1.9
CSDE1-202ENST00000339438 H0YAA0 97 aa3.18□□□□□ -1.9
CSDE1-202ENST00000339438 SMR3BP02814 79 aaPredicted RBP3.17□□□□□ -1.9
CSDE1-202ENST00000339438 J3QL48 77 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms