RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 LINC00483Q53H64 154 aa7.42□□□□□ -1.22
RNF4-201ENST00000314289 KRTAP29-1A8MX34 341 aaPredicted RBP7.42□□□□□ -1.22
RNF4-201ENST00000314289 PMAIP1Q13794 54 aa7.42□□□□□ -1.22
RNF4-201ENST00000314289 LINC00472Q9H8W2 130 aa7.41□□□□□ -1.22
RNF4-201ENST00000314289 VPS13BQ7Z7G8 4022 aa7.41□□□□□ -1.22
RNF4-201ENST00000314289 ZNF706Q9Y5V0 76 aaPredicted RBP7.41□□□□□ -1.22
RNF4-201ENST00000314289 Q5VV11 94 aa7.4□□□□□ -1.23
RNF4-201ENST00000314289 CHKB-CPT1BH3BT56 60 aa7.39□□□□□ -1.23
RNF4-201ENST00000314289 PRR15LQ9BU68 103 aa7.38□□□□□ -1.23
RNF4-201ENST00000314289 A8MWP4 228 aa7.37□□□□□ -1.23
RNF4-201ENST00000314289 Q8N9P0 234 aaPredicted RBP7.36□□□□□ -1.23
RNF4-201ENST00000314289 KMT2CQ8NEZ4 4911 aaKnown RBP7.35□□□□□ -1.23
RNF4-201ENST00000314289 PCOTHQ58A44 107 aa7.35□□□□□ -1.23
RNF4-201ENST00000314289 Q6ZSA8 131 aa7.35□□□□□ -1.23
RNF4-201ENST00000314289 SPANXA2-OT1Q8N9U9 137 aa7.35□□□□□ -1.23
RNF4-201ENST00000314289 Q96NJ1 140 aa7.35□□□□□ -1.23
RNF4-201ENST00000314289 SPINK6Q6UWN8 80 aa7.35□□□□□ -1.23
RNF4-201ENST00000314289 A0A087X002 238 aa7.34□□□□□ -1.23
RNF4-201ENST00000314289 SPTSSBQ8NFR3 76 aa7.34□□□□□ -1.23
RNF4-201ENST00000314289 H3BPC8 53 aa7.33□□□□□ -1.24
RNF4-201ENST00000314289 COA5Q86WW8 74 aa7.32□□□□□ -1.24
RNF4-201ENST00000314289 LIMD2Q9BT23 127 aa7.32□□□□□ -1.24
RNF4-201ENST00000314289 IGHV6-1A0A0B4J1U7 121 aa7.31□□□□□ -1.24
RNF4-201ENST00000314289 MMP24-AS1A0A0U1RRL7 71 aa7.31□□□□□ -1.24
RNF4-201ENST00000314289 SMR3BP02814 79 aaPredicted RBP7.3□□□□□ -1.24
RNF4-201ENST00000314289 A6NED7 52 aa7.29□□□□□ -1.24
RNF4-201ENST00000314289 NOTCH2NLQ7Z3S9 236 aa7.29□□□□□ -1.24
RNF4-201ENST00000314289 DYNC1H1Q14204 4646 aaKnown RBP7.28□□□□□ -1.24
RNF4-201ENST00000314289 NDUFS5O43920 106 aa7.28□□□□□ -1.24
RNF4-201ENST00000314289 KRTAP13-2Q52LG2 175 aa7.27□□□□□ -1.25
RNF4-201ENST00000314289 FAT1Q14517 4588 aa7.27□□□□□ -1.25
RNF4-201ENST00000314289 SPAG11AQ6PDA7 123 aa7.26□□□□□ -1.25
RNF4-201ENST00000314289 IGLV7-46A0A075B6I9 117 aa7.25□□□□□ -1.25
RNF4-201ENST00000314289 CD164Q04900 197 aa7.25□□□□□ -1.25
RNF4-201ENST00000314289 CDK2AP2O75956 126 aa7.25□□□□□ -1.25
RNF4-201ENST00000314289 LCA10Q71F78 164 aa7.25□□□□□ -1.25
RNF4-201ENST00000314289 RYR2Q92736 4967 aa7.24□□□□□ -1.25
RNF4-201ENST00000314289 Q75L30 129 aa7.23□□□□□ -1.25
RNF4-201ENST00000314289 C8orf17Q9NRJ1 99 aa7.23□□□□□ -1.25
RNF4-201ENST00000314289 A0A1B0GVX0 72 aa7.22□□□□□ -1.25
RNF4-201ENST00000314289 KRTAP1-4P0C5Y4 121 aa7.22□□□□□ -1.25
RNF4-201ENST00000314289 PLA2G1BP04054 148 aaKnown RBP7.21□□□□□ -1.26
RNF4-201ENST00000314289 SSBP3-AS1Q7Z2R9 100 aa7.21□□□□□ -1.26
RNF4-201ENST00000314289 LOC101927531A0A1B0GV80 90 aa7.19□□□□□ -1.26
RNF4-201ENST00000314289 TP53AIP1Q9HCN2 124 aa7.18□□□□□ -1.26
RNF4-201ENST00000314289 KTN1-AS1Q86SY8 53 aa7.18□□□□□ -1.26
RNF4-201ENST00000314289 ATP11AUNQ6ZP68 121 aa7.17□□□□□ -1.26
RNF4-201ENST00000314289 APOBP04114 4563 aaKnown RBP7.16□□□□□ -1.26
RNF4-201ENST00000314289 A0A1B0GVY2 172 aa7.15□□□□□ -1.27
RNF4-201ENST00000314289 HRES1P13985 223 aa7.15□□□□□ -1.27
RNF4-201ENST00000314289 PRR26Q8N8Z3 221 aa7.15□□□□□ -1.27
RNF4-201ENST00000314289 CDC42SE1Q9NRR8 79 aa7.14□□□□□ -1.27
RNF4-201ENST00000314289 ASB16-AS1Q495Z4 193 aa7.14□□□□□ -1.27
RNF4-201ENST00000314289 TYMSOSQ8TAI1 123 aa7.14□□□□□ -1.27
RNF4-201ENST00000314289 MRPL34Q9BQ48 92 aaKnown RBP7.14□□□□□ -1.27
RNF4-201ENST00000314289 LINC01558Q9Y6Z2 57 aa7.14□□□□□ -1.27
RNF4-201ENST00000314289 SPINK7P58062 85 aa7.13□□□□□ -1.27
RNF4-201ENST00000314289 H3BS24 57 aa7.13□□□□□ -1.27
RNF4-201ENST00000314289 RYR3Q15413 4870 aa7.12□□□□□ -1.27
RNF4-201ENST00000314289 A6NN06 94 aa7.12□□□□□ -1.27
RNF4-201ENST00000314289 RETNLBQ9BQ08 111 aa7.11□□□□□ -1.27
RNF4-201ENST00000314289 RBM12B-AS1Q9P1G2 102 aa7.11□□□□□ -1.27
RNF4-201ENST00000314289 Q5W150 140 aa7.08□□□□□ -1.28
RNF4-201ENST00000314289 LINC00313P59037 77 aa7.07□□□□□ -1.28
RNF4-201ENST00000314289 C7orf65Q6ZTY9 151 aa7.03□□□□□ -1.28
RNF4-201ENST00000314289 KRTAP10-4P60372 401 aaPredicted RBP7.02□□□□□ -1.29
RNF4-201ENST00000314289 FLG2Q5D862 2391 aaPredicted RBP7.02□□□□□ -1.29
RNF4-201ENST00000314289 LINC00304Q8N9R0 145 aa7.02□□□□□ -1.29
RNF4-201ENST00000314289 LRP1Q07954 4544 aaKnown RBP7.01□□□□□ -1.29
RNF4-201ENST00000314289 SPINK1P00995 79 aa7□□□□□ -1.29
RNF4-201ENST00000314289 A0A0A0MQY5 61 aa6.99□□□□□ -1.29
RNF4-201ENST00000314289 C8orf87E5RJ46 101 aa6.99□□□□□ -1.29
RNF4-201ENST00000314289 J3QL48 77 aa6.99□□□□□ -1.29
RNF4-201ENST00000314289 ACYP2P14621 99 aa6.97□□□□□ -1.29
RNF4-201ENST00000314289 PKHD1L1Q86WI1 4243 aa6.96□□□□□ -1.29
RNF4-201ENST00000314289 HSPG2P98160 4391 aa6.95□□□□□ -1.3
RNF4-201ENST00000314289 KRTAP16-1A8MUX0 517 aa6.95□□□□□ -1.3
RNF4-201ENST00000314289 KRTAP13-3Q3SY46 172 aa6.95□□□□□ -1.3
RNF4-201ENST00000314289 DMBT1Q9UGM3 2413 aaPredicted RBP6.95□□□□□ -1.3
RNF4-201ENST00000314289 KIAA1109Q2LD37 5005 aa6.94□□□□□ -1.3
RNF4-201ENST00000314289 PRAC1Q96KF2 57 aa6.94□□□□□ -1.3
RNF4-201ENST00000314289 C9orf92A6NGG3 77 aa6.93□□□□□ -1.3
RNF4-201ENST00000314289 A0A1B0GU69 56 aa6.9□□□□□ -1.3
RNF4-201ENST00000314289 KRTAP17-1Q9BYP8 105 aa6.9□□□□□ -1.31
RNF4-201ENST00000314289 IGKV2D-30A0A075B6S6 120 aa6.89□□□□□ -1.31
RNF4-201ENST00000314289 IGKV2-30P06310 120 aa6.89□□□□□ -1.31
RNF4-201ENST00000314289 ADM2Q7Z4H4 148 aa6.89□□□□□ -1.31
RNF4-201ENST00000314289 DMAC1Q96GE9 116 aa6.89□□□□□ -1.31
RNF4-201ENST00000314289 MYCBP2O75592 4640 aa6.89□□□□□ -1.31
RNF4-201ENST00000314289 FAM229AH3BQW9 127 aa6.89□□□□□ -1.31
RNF4-201ENST00000314289 Q5VSD8 79 aa6.88□□□□□ -1.31
RNF4-201ENST00000314289 EPPK1P58107 5090 aaKnown RBP6.88□□□□□ -1.31
RNF4-201ENST00000314289 RYR1P21817 5038 aa6.87□□□□□ -1.31
RNF4-201ENST00000314289 Q8N1X5 172 aa6.85□□□□□ -1.31
RNF4-201ENST00000314289 TNXBP22105 4242 aa6.83□□□□□ -1.32
RNF4-201ENST00000314289 RPS29P62273 56 aaKnown RBP6.82□□□□□ -1.32
RNF4-201ENST00000314289 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
RNF4-201ENST00000314289 UQCR11O14957 56 aa6.78□□□□□ -1.32
RNF4-201ENST00000314289 SPATA8Q6RVD6 105 aa6.78□□□□□ -1.32
RNF4-201ENST00000314289 FAT3Q8TDW7 4589 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 178.5 ms