RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LINC00483Q53H64 154 aa3.54□□□□□ -1.84
CUX1-220ENST00000607092 ADAMTSL4-AS1Q5T5F5 129 aa3.54□□□□□ -1.84
CUX1-220ENST00000607092 SPCS1Q9Y6A9 102 aa3.54□□□□□ -1.84
CUX1-220ENST00000607092 LOC107984156A0A0G2JMH3 177 aa3.53□□□□□ -1.84
CUX1-220ENST00000607092 COX6CP09669 75 aa3.53□□□□□ -1.84
CUX1-220ENST00000607092 ARL17AQ8IVW1 177 aa3.53□□□□□ -1.84
CUX1-220ENST00000607092 LINC00308Q8TCZ7 52 aa3.53□□□□□ -1.84
CUX1-220ENST00000607092 KCNQ1DNQ9H478 68 aa3.53□□□□□ -1.84
CUX1-220ENST00000607092 CBY1Q9Y3M2 126 aa3.53□□□□□ -1.84
CUX1-220ENST00000607092 LOC100996750A0A140TA64 210 aa3.52□□□□□ -1.85
CUX1-220ENST00000607092 K7ERJ3 54 aa3.52□□□□□ -1.85
CUX1-220ENST00000607092 SPRR1AP35321 89 aa3.52□□□□□ -1.85
CUX1-220ENST00000607092 SMCR5Q8TEV8 140 aa3.52□□□□□ -1.85
CUX1-220ENST00000607092 KRTAP4-6Q9BYQ5 205 aa3.52□□□□□ -1.85
CUX1-220ENST00000607092 TRAV13-2A0A0B4J235 113 aa3.51□□□□□ -1.85
CUX1-220ENST00000607092 SCGB1C2P0DMR2 95 aa3.51□□□□□ -1.85
CUX1-220ENST00000607092 GAGE2AQ6NT46 116 aa3.51□□□□□ -1.85
CUX1-220ENST00000607092 Q8N377 158 aa3.51□□□□□ -1.85
CUX1-220ENST00000607092 LIMD2Q9BT23 127 aa3.51□□□□□ -1.85
CUX1-220ENST00000607092 IGLV9-49A0A0B4J1Y8 123 aa3.5□□□□□ -1.85
CUX1-220ENST00000607092 NDUFC2O95298 119 aa3.5□□□□□ -1.85
CUX1-220ENST00000607092 PSMB2P49721 201 aa3.5□□□□□ -1.85
CUX1-220ENST00000607092 MOBPQ13875 183 aa3.5□□□□□ -1.85
CUX1-220ENST00000607092 NAA38Q9BRA0 125 aaKnown RBP3.5□□□□□ -1.85
CUX1-220ENST00000607092 TRBV10-2A0A0K0K1G8 114 aa3.49□□□□□ -1.85
CUX1-220ENST00000607092 KRTAP4-16G5E9R7 235 aaPredicted RBP3.49□□□□□ -1.85
CUX1-220ENST00000607092 H3BMG7 143 aa3.49□□□□□ -1.85
CUX1-220ENST00000607092 ATXN8Q156A1 80 aa3.49□□□□□ -1.85
CUX1-220ENST00000607092 Q1RN00 199 aa3.49□□□□□ -1.85
CUX1-220ENST00000607092 SOSTDC1Q6X4U4 206 aa3.49□□□□□ -1.85
CUX1-220ENST00000607092 MIR7-3HGQ8N6C7 128 aa3.49□□□□□ -1.85
CUX1-220ENST00000607092 TRBV10-3A0A0K0K1G6 114 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 A0A0U1RRA0 63 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 H0YGX0 51 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 K7ERU9 68 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 C9orf153Q5TBE3 101 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 Q6ZRX8 168 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 KRTAP19-1Q8IUB9 90 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 Q8NDZ9 215 aa3.48□□□□□ -1.85
CUX1-220ENST00000607092 J3QR89 54 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 NCR3O14931 201 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 TCL1BO95988 128 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 OCIAD2Q56VL3 154 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 S100A7L2Q5SY68 101 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 KRTAP4-1Q9BYQ7 146 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 PRO0461Q9UI25 63 aa3.47□□□□□ -1.85
CUX1-220ENST00000607092 IGLV8-61A0A075B6I0 122 aa3.46□□□□□ -1.86
CUX1-220ENST00000607092 H7C2G1 150 aa3.46□□□□□ -1.86
CUX1-220ENST00000607092 M0R2T5 61 aa3.46□□□□□ -1.86
CUX1-220ENST00000607092 TRACP01848 142 aa3.46□□□□□ -1.86
CUX1-220ENST00000607092 NPC2P61916 151 aa3.46□□□□□ -1.86
CUX1-220ENST00000607092 A0A1B0GX51 115 aa3.45□□□□□ -1.86
CUX1-220ENST00000607092 LST1O00453 97 aa3.45□□□□□ -1.86
CUX1-220ENST00000607092 SNCGO76070 127 aa3.45□□□□□ -1.86
CUX1-220ENST00000607092 ANKRD29Q8N6D5 301 aa3.45□□□□□ -1.86
CUX1-220ENST00000607092 TRAV23DV6A0A075B6W5 121 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 C9JAW5 83 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 H3BT86 120 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 ZNF73O43830 326 aaPredicted RBP3.44□□□□□ -1.86
CUX1-220ENST00000607092 IGLV6-57P01721 117 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 MT1HP80294 61 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 CD164Q04900 197 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 ETDBQ3ZM63 59 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 PCOTHQ58A44 107 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 COX6B2Q6YFQ2 88 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 TEN1Q86WV5 123 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 DHRS4-AS1Q9P1J3 65 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 LAMTOR3Q9UHA4 124 aa3.44□□□□□ -1.86
CUX1-220ENST00000607092 FLGP20930 4061 aaPredicted RBP3.44□□□□□ -1.86
CUX1-220ENST00000607092 H3BQ85 93 aa3.43□□□□□ -1.86
CUX1-220ENST00000607092 ERC2-IT1O76042 136 aa3.43□□□□□ -1.86
CUX1-220ENST00000607092 OR13C6PQ8NH95 151 aa3.43□□□□□ -1.86
CUX1-220ENST00000607092 SMIM11BQ8TCY0 68 aa3.43□□□□□ -1.86
CUX1-220ENST00000607092 PPDPFLQ8WWR9 84 aa3.43□□□□□ -1.86
CUX1-220ENST00000607092 Q9BRP9 147 aa3.43□□□□□ -1.86
CUX1-220ENST00000607092 TRBV7-6A0A0J9YX20 115 aa3.42□□□□□ -1.86
CUX1-220ENST00000607092 KRTAP9-7A8MTY7 169 aa3.42□□□□□ -1.86
CUX1-220ENST00000607092 SPRR1BP22528 89 aa3.42□□□□□ -1.86
CUX1-220ENST00000607092 MPLKIPQ8TAP9 179 aa3.42□□□□□ -1.86
CUX1-220ENST00000607092 BAALC-AS2P0C853 105 aa3.41□□□□□ -1.86
CUX1-220ENST00000607092 KRTAP10-6P60371 365 aaPredicted RBP3.41□□□□□ -1.86
CUX1-220ENST00000607092 Q5XG85 94 aa3.41□□□□□ -1.86
CUX1-220ENST00000607092 CLEC2BQ92478 149 aa3.41□□□□□ -1.86
CUX1-220ENST00000607092 KRTAP4-12Q9BQ66 201 aa3.41□□□□□ -1.86
CUX1-220ENST00000607092 C9orf92A6NGG3 77 aa3.4□□□□□ -1.87
CUX1-220ENST00000607092 DNAL4O96015 105 aa3.4□□□□□ -1.87
CUX1-220ENST00000607092 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.87
CUX1-220ENST00000607092 LCE4AQ5TA78 99 aa3.4□□□□□ -1.87
CUX1-220ENST00000607092 TMEM256-PLSCR3K7ERE1 68 aa3.39□□□□□ -1.87
CUX1-220ENST00000607092 VPS25Q9BRG1 176 aa3.39□□□□□ -1.87
CUX1-220ENST00000607092 KRTAP4-8Q9BYQ9 185 aa3.39□□□□□ -1.87
CUX1-220ENST00000607092 TEX49A0A1B0GTD5 131 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 FAM240AA0A1B0GVK7 77 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 ACYP1P07311 99 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 RPL37P61927 97 aaKnown RBP3.38□□□□□ -1.87
CUX1-220ENST00000607092 LINC00575Q6W349 94 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 Q75L30 129 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 MTURNQ8N3F0 131 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 FAM218AQ96MZ4 157 aa3.38□□□□□ -1.87
CUX1-220ENST00000607092 ORMDL1Q9P0S3 153 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms