RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PAM16Q9Y3D7 125 aa6.77□□□□□ -1.33
TRIM28-212ENST00000597995 C12orf57Q99622 126 aa6.76□□□□□ -1.33
TRIM28-212ENST00000597995 VAMP8Q9BV40 100 aa6.76□□□□□ -1.33
TRIM28-212ENST00000597995 C9orf92A6NGG3 77 aa6.75□□□□□ -1.33
TRIM28-212ENST00000597995 H7C2G1 150 aa6.75□□□□□ -1.33
TRIM28-212ENST00000597995 COX8AP10176 69 aa6.75□□□□□ -1.33
TRIM28-212ENST00000597995 KRTAP10-6P60371 365 aaPredicted RBP6.75□□□□□ -1.33
TRIM28-212ENST00000597995 SPATA45Q537H7 98 aa6.75□□□□□ -1.33
TRIM28-212ENST00000597995 LINC00575Q6W349 94 aa6.75□□□□□ -1.33
TRIM28-212ENST00000597995 Q5XG85 94 aa6.74□□□□□ -1.33
TRIM28-212ENST00000597995 C14orf144Q96I85 54 aa6.73□□□□□ -1.33
TRIM28-212ENST00000597995 RAB37Q96AX2 223 aa6.72□□□□□ -1.33
TRIM28-212ENST00000597995 TMA7Q9Y2S6 64 aaKnown RBP6.72□□□□□ -1.33
TRIM28-212ENST00000597995 F8WEM9 126 aa6.71□□□□□ -1.34
TRIM28-212ENST00000597995 C1orf195Q5TG92 126 aa6.71□□□□□ -1.34
TRIM28-212ENST00000597995 hADV29S1A0JD25 119 aa6.7□□□□□ -1.34
TRIM28-212ENST00000597995 DLEU1O43261 78 aa6.7□□□□□ -1.34
TRIM28-212ENST00000597995 Q6ZQY7 126 aa6.7□□□□□ -1.34
TRIM28-212ENST00000597995 M0R2T5 61 aa6.68□□□□□ -1.34
TRIM28-212ENST00000597995 SNCGO76070 127 aa6.68□□□□□ -1.34
TRIM28-212ENST00000597995 BVES-AS1Q5T3Y7 98 aa6.68□□□□□ -1.34
TRIM28-212ENST00000597995 CFC1P0CG37 223 aa6.67□□□□□ -1.34
TRIM28-212ENST00000597995 RPL37P61927 97 aaKnown RBP6.67□□□□□ -1.34
TRIM28-212ENST00000597995 C2orf91Q6ZV80 131 aa6.67□□□□□ -1.34
TRIM28-212ENST00000597995 TMEM238LA0A1B0GVL6 79 aa6.66□□□□□ -1.34
TRIM28-212ENST00000597995 A6NJY4 79 aa6.66□□□□□ -1.34
TRIM28-212ENST00000597995 COX6B2Q6YFQ2 88 aa6.65□□□□□ -1.34
TRIM28-212ENST00000597995 HIGD1BQ9P298 99 aa6.65□□□□□ -1.34
TRIM28-212ENST00000597995 Q6JHZ5 121 aa6.64□□□□□ -1.35
TRIM28-212ENST00000597995 IGFL1Q6UW32 110 aa6.64□□□□□ -1.35
TRIM28-212ENST00000597995 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.64□□□□□ -1.35
TRIM28-212ENST00000597995 PPDPFLQ8WWR9 84 aa6.64□□□□□ -1.35
TRIM28-212ENST00000597995 TCL1BO95988 128 aa6.63□□□□□ -1.35
TRIM28-212ENST00000597995 OCIAD2Q56VL3 154 aa6.63□□□□□ -1.35
TRIM28-212ENST00000597995 FLGP20930 4061 aaPredicted RBP6.62□□□□□ -1.35
TRIM28-212ENST00000597995 CEND1Q8N111 149 aa6.62□□□□□ -1.35
TRIM28-212ENST00000597995 FAM218AQ96MZ4 157 aa6.62□□□□□ -1.35
TRIM28-212ENST00000597995 SNHG12Q9BXW3 62 aa6.62□□□□□ -1.35
TRIM28-212ENST00000597995 A0A0B4J2C4 111 aa6.61□□□□□ -1.35
TRIM28-212ENST00000597995 TRBV7-7A0A0K0K1E9 115 aa6.61□□□□□ -1.35
TRIM28-212ENST00000597995 CLEC2BQ92478 149 aa6.61□□□□□ -1.35
TRIM28-212ENST00000597995 H3BUT2 72 aa6.6□□□□□ -1.35
TRIM28-212ENST00000597995 PYY3Q5JQD4 70 aa6.59□□□□□ -1.35
TRIM28-212ENST00000597995 PRO1854Q9UHT4 67 aa6.59□□□□□ -1.35
TRIM28-212ENST00000597995 H0YGX0 51 aa6.58□□□□□ -1.36
TRIM28-212ENST00000597995 PSMB2P49721 201 aa6.57□□□□□ -1.36
TRIM28-212ENST00000597995 FXYD2P54710 66 aa6.57□□□□□ -1.36
TRIM28-212ENST00000597995 HSD52Q0P140 79 aa6.57□□□□□ -1.36
TRIM28-212ENST00000597995 GHRHP01286 108 aa6.56□□□□□ -1.36
TRIM28-212ENST00000597995 DNAL4O96015 105 aa6.55□□□□□ -1.36
TRIM28-212ENST00000597995 UQCR10Q9UDW1 63 aa6.55□□□□□ -1.36
TRIM28-212ENST00000597995 NDUFV3P56181 108 aaKnown RBP6.54□□□□□ -1.36
TRIM28-212ENST00000597995 COX6CP09669 75 aa6.53□□□□□ -1.36
TRIM28-212ENST00000597995 FABP2P12104 132 aa6.53□□□□□ -1.36
TRIM28-212ENST00000597995 Q6Q795 121 aa6.53□□□□□ -1.36
TRIM28-212ENST00000597995 A0A1B0GX51 115 aa6.52□□□□□ -1.37
TRIM28-212ENST00000597995 K7ERJ3 54 aa6.52□□□□□ -1.37
TRIM28-212ENST00000597995 TRIAP1O43715 76 aa6.52□□□□□ -1.37
TRIM28-212ENST00000597995 ATP11AUNQ6ZP68 121 aa6.5□□□□□ -1.37
TRIM28-212ENST00000597995 Q75L30 129 aa6.5□□□□□ -1.37
TRIM28-212ENST00000597995 OBSCN-AS1Q96MR7 158 aa6.5□□□□□ -1.37
TRIM28-212ENST00000597995 SS18L2Q9UHA2 77 aa6.5□□□□□ -1.37
TRIM28-212ENST00000597995 LST1O00453 97 aa6.49□□□□□ -1.37
TRIM28-212ENST00000597995 KRTAP9-7A8MTY7 169 aa6.48□□□□□ -1.37
TRIM28-212ENST00000597995 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.48□□□□□ -1.37
TRIM28-212ENST00000597995 H3BMG7 143 aa6.48□□□□□ -1.37
TRIM28-212ENST00000597995 SCGB1C2P0DMR2 95 aa6.48□□□□□ -1.37
TRIM28-212ENST00000597995 TEN1Q86WV5 123 aa6.48□□□□□ -1.37
TRIM28-212ENST00000597995 A0A1B0GV72 72 aa6.47□□□□□ -1.37
TRIM28-212ENST00000597995 A0A1W2PNM2 257 aa6.47□□□□□ -1.37
TRIM28-212ENST00000597995 Q96NJ1 140 aa6.47□□□□□ -1.37
TRIM28-212ENST00000597995 ORMDL1Q9P0S3 153 aa6.47□□□□□ -1.37
TRIM28-212ENST00000597995 A0A087WSZ3 146 aa6.46□□□□□ -1.38
TRIM28-212ENST00000597995 H3BQ85 93 aa6.45□□□□□ -1.38
TRIM28-212ENST00000597995 KRTAP9-8Q9BYQ0 159 aa6.44□□□□□ -1.38
TRIM28-212ENST00000597995 M0R143 59 aa6.43□□□□□ -1.38
TRIM28-212ENST00000597995 TMEM256-PLSCR3K7ERE1 68 aa6.41□□□□□ -1.38
TRIM28-212ENST00000597995 ANKRD29Q8N6D5 301 aa6.41□□□□□ -1.38
TRIM28-212ENST00000597995 C20orf166-AS1Q96NR2 134 aa6.41□□□□□ -1.38
TRIM28-212ENST00000597995 A8MUU9 505 aa6.4□□□□□ -1.38
TRIM28-212ENST00000597995 SMIM6P0DI80 62 aa6.4□□□□□ -1.38
TRIM28-212ENST00000597995 SIGMAR1Q99720 223 aa6.39□□□□□ -1.39
TRIM28-212ENST00000597995 TRBV20-1A0A075B6N2 111 aa6.38□□□□□ -1.39
TRIM28-212ENST00000597995 TRBV7-4A0A0J9YYF1 115 aa6.38□□□□□ -1.39
TRIM28-212ENST00000597995 TSTD3H0UI37 97 aa6.38□□□□□ -1.39
TRIM28-212ENST00000597995 DSCR10P59022 87 aa6.38□□□□□ -1.39
TRIM28-212ENST00000597995 VPS25Q9BRG1 176 aa6.38□□□□□ -1.39
TRIM28-212ENST00000597995 TRACP01848 142 aa6.37□□□□□ -1.39
TRIM28-212ENST00000597995 SSPOA2VEC9 5147 aa6.36□□□□□ -1.39
TRIM28-212ENST00000597995 BATFQ16520 125 aa6.36□□□□□ -1.39
TRIM28-212ENST00000597995 USH2AO75445 5202 aa6.35□□□□□ -1.39
TRIM28-212ENST00000597995 CCKP06307 115 aa6.35□□□□□ -1.39
TRIM28-212ENST00000597995 UBE2V1Q13404 147 aa6.35□□□□□ -1.39
TRIM28-212ENST00000597995 LINC00472Q9H8W2 130 aa6.35□□□□□ -1.39
TRIM28-212ENST00000597995 KRTAP16-1A8MUX0 517 aa6.34□□□□□ -1.39
TRIM28-212ENST00000597995 DEFB116Q30KQ4 102 aa6.34□□□□□ -1.39
TRIM28-212ENST00000597995 NOTCH2NLQ7Z3S9 236 aa6.34□□□□□ -1.39
TRIM28-212ENST00000597995 DSCR8Q96T75 97 aa6.34□□□□□ -1.39
TRIM28-212ENST00000597995 NAA38Q9BRA0 125 aaKnown RBP6.34□□□□□ -1.39
TRIM28-212ENST00000597995 IGKV4-1P06312 121 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms