RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	BRK1	Q8WUW1	75 aa		10.8	□□□□□ -0.68
VPS53-215	ENST00000573028	TENM2	Q9NT68	2774 aa		10.79	□□□□□ -0.68
VPS53-215	ENST00000573028	HCG22	E2RYF7	251 aa		10.79	□□□□□ -0.68
VPS53-215	ENST00000573028	CHTF8	P0CG12	524 aa		10.79	□□□□□ -0.68
VPS53-215	ENST00000573028	KRTAP1-5	Q9BYS1	174 aa		10.79	□□□□□ -0.68
VPS53-215	ENST00000573028	UBE2A	P49459	152 aa		10.77	□□□□□ -0.69
VPS53-215	ENST00000573028	PRO0628	Q9UI54	55 aa		10.75	□□□□□ -0.69
VPS53-215	ENST00000573028	PHF5A	Q7RTV0	110 aa	Known RBP	10.75	□□□□□ -0.69
VPS53-215	ENST00000573028	UBE2DNL	Q8IWF7	75 aa		10.74	□□□□□ -0.69
VPS53-215	ENST00000573028		K7EIL1	84 aa		10.74	□□□□□ -0.69
VPS53-215	ENST00000573028	DNAH10	Q8IVF4	4471 aa		10.74	□□□□□ -0.69
VPS53-215	ENST00000573028	CMYA5	Q8N3K9	4069 aa		10.73	□□□□□ -0.69
VPS53-215	ENST00000573028	C16orf90	A8MZG2	172 aa		10.73	□□□□□ -0.69
VPS53-215	ENST00000573028	PKIG	Q9Y2B9	76 aa		10.72	□□□□□ -0.69
VPS53-215	ENST00000573028	KRTAP11-1	Q8IUC1	163 aa		10.71	□□□□□ -0.69
VPS53-215	ENST00000573028	C1orf64	Q8NEQ6	169 aa		10.71	□□□□□ -0.69
VPS53-215	ENST00000573028	LYST	Q99698	3801 aa		10.71	□□□□□ -0.7
VPS53-215	ENST00000573028	LCE6A	A0A183	80 aa		10.69	□□□□□ -0.7
VPS53-215	ENST00000573028	LINC00208	Q96KT6	92 aa		10.68	□□□□□ -0.7
VPS53-215	ENST00000573028	hDV103S1	A0JD37	113 aa		10.67	□□□□□ -0.7
VPS53-215	ENST00000573028	ZCCHC13	Q8WW36	166 aa	Known RBP	10.67	□□□□□ -0.7
VPS53-215	ENST00000573028	MP68	P56378	58 aa		10.65	□□□□□ -0.7
VPS53-215	ENST00000573028	HUWE1	Q7Z6Z7	4374 aa	Known RBP	10.65	□□□□□ -0.7
VPS53-215	ENST00000573028	DNAH1	Q9P2D7	4330 aa		10.65	□□□□□ -0.71
VPS53-215	ENST00000573028	COL7A1	Q02388	2944 aa		10.64	□□□□□ -0.71
VPS53-215	ENST00000573028	CNBP	P62633	177 aa	Known RBP	10.63	□□□□□ -0.71
VPS53-215	ENST00000573028	CASC2	Q6XLA1	102 aa		10.62	□□□□□ -0.71
VPS53-215	ENST00000573028		H0Y9J4	135 aa		10.61	□□□□□ -0.71
VPS53-215	ENST00000573028	PSPHP1	O15172	72 aa		10.61	□□□□□ -0.71
VPS53-215	ENST00000573028	DNAH3	Q8TD57	4116 aa		10.6	□□□□□ -0.71
VPS53-215	ENST00000573028	IGLV8-61	A0A075B6I0	122 aa		10.6	□□□□□ -0.71
VPS53-215	ENST00000573028		H0Y9P7	68 aa		10.58	□□□□□ -0.72
VPS53-215	ENST00000573028	PRR15	Q8IV56	129 aa		10.56	□□□□□ -0.72
VPS53-215	ENST00000573028	B9D2	Q9BPU9	175 aa		10.56	□□□□□ -0.72
VPS53-215	ENST00000573028	DNAH9	Q9NYC9	4486 aa		10.56	□□□□□ -0.72
VPS53-215	ENST00000573028	IGLV9-49	A0A0B4J1Y8	123 aa		10.56	□□□□□ -0.72
VPS53-215	ENST00000573028	PANO1	I0J062	215 aa		10.56	□□□□□ -0.72
VPS53-215	ENST00000573028	TRAV22	A0A0B4J277	110 aa		10.55	□□□□□ -0.72
VPS53-215	ENST00000573028	NDUFB1	O75438	58 aa		10.55	□□□□□ -0.72
VPS53-215	ENST00000573028	KRTAP29-1	A8MX34	341 aa	Predicted RBP	10.54	□□□□□ -0.72
VPS53-215	ENST00000573028	C14orf177	Q52M58	125 aa		10.54	□□□□□ -0.72
VPS53-215	ENST00000573028		A8MWP4	228 aa		10.53	□□□□□ -0.72
VPS53-215	ENST00000573028	APLN	Q9ULZ1	77 aa		10.52	□□□□□ -0.73
VPS53-215	ENST00000573028	C9orf163	Q8N9P6	203 aa		10.52	□□□□□ -0.73
VPS53-215	ENST00000573028	LINC00472	Q9H8W2	130 aa		10.52	□□□□□ -0.73
VPS53-215	ENST00000573028	CYP4F30P	Q9H0H9	118 aa		10.5	□□□□□ -0.73
VPS53-215	ENST00000573028	SPRR1B	P22528	89 aa		10.48	□□□□□ -0.73
VPS53-215	ENST00000573028		Q1T7F1	81 aa		10.47	□□□□□ -0.73
VPS53-215	ENST00000573028		A8MUN3	132 aa		10.46	□□□□□ -0.73
VPS53-215	ENST00000573028	PCOTH	Q58A44	107 aa		10.44	□□□□□ -0.74
VPS53-215	ENST00000573028	C1orf195	Q5TG92	126 aa		10.44	□□□□□ -0.74
VPS53-215	ENST00000573028	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	10.44	□□□□□ -0.74
VPS53-215	ENST00000573028	NBDY	A0A0U1RRE5	68 aa		10.43	□□□□□ -0.74
VPS53-215	ENST00000573028	DNAH7	Q8WXX0	4024 aa		10.43	□□□□□ -0.74
VPS53-215	ENST00000573028	MMP24-AS1	A0A0U1RRL7	71 aa		10.43	□□□□□ -0.74
VPS53-215	ENST00000573028	MDFI	Q99750	246 aa		10.43	□□□□□ -0.74
VPS53-215	ENST00000573028	NDUFS5	O43920	106 aa		10.42	□□□□□ -0.74
VPS53-215	ENST00000573028	ANAPC11	Q9NYG5	84 aa		10.42	□□□□□ -0.74
VPS53-215	ENST00000573028	IGHV6-1	A0A0B4J1U7	121 aa		10.39	□□□□□ -0.75
VPS53-215	ENST00000573028		H3BPC8	53 aa		10.37	□□□□□ -0.75
VPS53-215	ENST00000573028	KRTAP13-1	Q8IUC0	172 aa		10.37	□□□□□ -0.75
VPS53-215	ENST00000573028	MOBP	Q13875	183 aa		10.35	□□□□□ -0.75
VPS53-215	ENST00000573028	SPANXA2-OT1	Q8N9U9	137 aa		10.35	□□□□□ -0.75
VPS53-215	ENST00000573028		A8MU10	97 aa		10.34	□□□□□ -0.75
VPS53-215	ENST00000573028		Q6ZRN7	208 aa	Predicted RBP	10.33	□□□□□ -0.76
VPS53-215	ENST00000573028	PLEC	Q15149	4684 aa	Known RBP	10.33	□□□□□ -0.76
VPS53-215	ENST00000573028	PRR15L	Q9BU68	103 aa		10.33	□□□□□ -0.76
VPS53-215	ENST00000573028	CDK2AP2	O75956	126 aa		10.32	□□□□□ -0.76
VPS53-215	ENST00000573028		Q96NJ1	140 aa		10.32	□□□□□ -0.76
VPS53-215	ENST00000573028	CHKB-CPT1B	H3BT56	60 aa		10.32	□□□□□ -0.76
VPS53-215	ENST00000573028	SPACA4	Q8TDM5	124 aa		10.32	□□□□□ -0.76
VPS53-215	ENST00000573028		V9GYY9	64 aa		10.32	□□□□□ -0.76
VPS53-215	ENST00000573028	C8orf17	Q9NRJ1	99 aa		10.31	□□□□□ -0.76
VPS53-215	ENST00000573028	COA5	Q86WW8	74 aa		10.3	□□□□□ -0.76
VPS53-215	ENST00000573028		Q8N9P0	234 aa	Predicted RBP	10.3	□□□□□ -0.76
VPS53-215	ENST00000573028	SPINK6	Q6UWN8	80 aa		10.3	□□□□□ -0.76
VPS53-215	ENST00000573028		Q5VV11	94 aa		10.29	□□□□□ -0.76
VPS53-215	ENST00000573028	PSORS1C2	Q9UIG4	136 aa		10.29	□□□□□ -0.76
VPS53-215	ENST00000573028	CD164	Q04900	197 aa		10.27	□□□□□ -0.77
VPS53-215	ENST00000573028		A0A087WTM6	91 aa		10.26	□□□□□ -0.77
VPS53-215	ENST00000573028	NUPR2	A6NF83	97 aa		10.26	□□□□□ -0.77
VPS53-215	ENST00000573028		A0A087X002	238 aa		10.26	□□□□□ -0.77
VPS53-215	ENST00000573028	NOTCH2NL	Q7Z3S9	236 aa		10.26	□□□□□ -0.77
VPS53-215	ENST00000573028	TG	P01266	2768 aa		10.25	□□□□□ -0.77
VPS53-215	ENST00000573028		A0A1B0GVX0	72 aa		10.25	□□□□□ -0.77
VPS53-215	ENST00000573028	WWC2-AS2	Q96NR7	200 aa		10.25	□□□□□ -0.77
VPS53-215	ENST00000573028	RTL8C	O15255	209 aa		10.24	□□□□□ -0.77
VPS53-215	ENST00000573028	IGLV7-46	A0A075B6I9	117 aa		10.24	□□□□□ -0.77
VPS53-215	ENST00000573028	TP53AIP1	Q9HCN2	124 aa		10.24	□□□□□ -0.77
VPS53-215	ENST00000573028	LIMD2	Q9BT23	127 aa		10.23	□□□□□ -0.77
VPS53-215	ENST00000573028	ZNF706	Q9Y5V0	76 aa	Predicted RBP	10.22	□□□□□ -0.77
VPS53-215	ENST00000573028	SPAG11A	Q6PDA7	123 aa		10.21	□□□□□ -0.77
VPS53-215	ENST00000573028	IGLV5-52	A0A0A0MRZ9	124 aa		10.21	□□□□□ -0.78
VPS53-215	ENST00000573028	LINC00483	Q53H64	154 aa		10.2	□□□□□ -0.78
VPS53-215	ENST00000573028	SPTSSB	Q8NFR3	76 aa		10.2	□□□□□ -0.78
VPS53-215	ENST00000573028	MRPL34	Q9BQ48	92 aa	Known RBP	10.2	□□□□□ -0.78
VPS53-215	ENST00000573028	CIRBP-AS1	Q8TBR5	109 aa		10.19	□□□□□ -0.78
VPS53-215	ENST00000573028		A6NED7	52 aa		10.18	□□□□□ -0.78
VPS53-215	ENST00000573028	ZNF861P	O60384	105 aa		10.18	□□□□□ -0.78
VPS53-215	ENST00000573028	ASB16-AS1	Q495Z4	193 aa		10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms