RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 KIAA0087Q14695 138 aa7.05□□□□□ -1.28
CLK3-226ENST00000569406 C1orf134Q5TEV5 83 aa7.05□□□□□ -1.28
CLK3-226ENST00000569406 SPANXA2-OT1Q8N9U9 137 aa7.05□□□□□ -1.28
CLK3-226ENST00000569406 H0Y9P7 68 aa7.04□□□□□ -1.28
CLK3-226ENST00000569406 LINC01558Q9Y6Z2 57 aa7.04□□□□□ -1.28
CLK3-226ENST00000569406 KCNQ1DNQ9H478 68 aa7.03□□□□□ -1.28
CLK3-226ENST00000569406 CAMK2N2Q96S95 79 aa7.03□□□□□ -1.28
CLK3-226ENST00000569406 IGHV4-30-4P0DP06 118 aa7.02□□□□□ -1.29
CLK3-226ENST00000569406 DSCR10P59022 87 aa7.02□□□□□ -1.29
CLK3-226ENST00000569406 IGLV6-57P01721 117 aa7.02□□□□□ -1.29
CLK3-226ENST00000569406 CYSRT1A8MQ03 144 aa7.02□□□□□ -1.29
CLK3-226ENST00000569406 A0A1W2PNM2 257 aa7.01□□□□□ -1.29
CLK3-226ENST00000569406 INAFM1C9JVW0 142 aa7.01□□□□□ -1.29
CLK3-226ENST00000569406 COX17Q14061 63 aa7.01□□□□□ -1.29
CLK3-226ENST00000569406 TENM3Q9P273 2699 aa7□□□□□ -1.29
CLK3-226ENST00000569406 DNAH1Q9P2D7 4330 aa7□□□□□ -1.29
CLK3-226ENST00000569406 LYSTQ99698 3801 aa7□□□□□ -1.29
CLK3-226ENST00000569406 KPRPQ5T749 579 aaPredicted RBP7□□□□□ -1.29
CLK3-226ENST00000569406 NBEAL1Q6ZS30 2694 aa7□□□□□ -1.29
CLK3-226ENST00000569406 NOTCH1P46531 2555 aa6.99□□□□□ -1.29
CLK3-226ENST00000569406 PCOTHQ58A44 107 aa6.99□□□□□ -1.29
CLK3-226ENST00000569406 IGKV2D-24A0A075B6R9 120 aa6.98□□□□□ -1.29
CLK3-226ENST00000569406 Q6ZR54 194 aa6.98□□□□□ -1.29
CLK3-226ENST00000569406 MGAM2Q2M2H8 2515 aa6.96□□□□□ -1.3
CLK3-226ENST00000569406 IGHV6-1A0A0B4J1U7 121 aa6.96□□□□□ -1.3
CLK3-226ENST00000569406 SPART-AS1P0CW21 52 aa6.94□□□□□ -1.3
CLK3-226ENST00000569406 C1orf137Q5JT78 98 aa6.93□□□□□ -1.3
CLK3-226ENST00000569406 RTL8CO15255 209 aa6.93□□□□□ -1.3
CLK3-226ENST00000569406 PLAC8Q9NZF1 115 aa6.93□□□□□ -1.3
CLK3-226ENST00000569406 STAB1Q9NY15 2570 aa6.92□□□□□ -1.3
CLK3-226ENST00000569406 A0A1B0GUV1 79 aa6.92□□□□□ -1.3
CLK3-226ENST00000569406 IGLV1-50A0A075B6I6 118 aa6.92□□□□□ -1.3
CLK3-226ENST00000569406 CNBPP62633 177 aaKnown RBP6.91□□□□□ -1.3
CLK3-226ENST00000569406 C9orf163Q8N9P6 203 aa6.91□□□□□ -1.3
CLK3-226ENST00000569406 HUWE1Q7Z6Z7 4374 aaKnown RBP6.91□□□□□ -1.3
CLK3-226ENST00000569406 IGLV7-46A0A075B6I9 117 aa6.9□□□□□ -1.3
CLK3-226ENST00000569406 COL6A5A8TX70 2615 aa6.9□□□□□ -1.3
CLK3-226ENST00000569406 RPL37AP8A6NKH3 93 aa6.9□□□□□ -1.31
CLK3-226ENST00000569406 COL7A1Q02388 2944 aa6.89□□□□□ -1.31
CLK3-226ENST00000569406 LINC00528Q8N1L1 170 aa6.89□□□□□ -1.31
CLK3-226ENST00000569406 C7orf33Q8WU49 177 aa6.89□□□□□ -1.31
CLK3-226ENST00000569406 H3BPC8 53 aa6.89□□□□□ -1.31
CLK3-226ENST00000569406 RPL37AP61513 92 aaKnown RBP6.89□□□□□ -1.31
CLK3-226ENST00000569406 Q8NBF4 154 aa6.89□□□□□ -1.31
CLK3-226ENST00000569406 CSMD3Q7Z407 3707 aa6.89□□□□□ -1.31
CLK3-226ENST00000569406 ROMO1P60602 79 aa6.88□□□□□ -1.31
CLK3-226ENST00000569406 Q8N377 158 aa6.88□□□□□ -1.31
CLK3-226ENST00000569406 ASB16-AS1Q495Z4 193 aa6.87□□□□□ -1.31
CLK3-226ENST00000569406 DNAH7Q8WXX0 4024 aa6.86□□□□□ -1.31
CLK3-226ENST00000569406 KRTAP10-11P60412 298 aa6.86□□□□□ -1.31
CLK3-226ENST00000569406 IGLV5-48A0A075B6I7 105 aa6.86□□□□□ -1.31
CLK3-226ENST00000569406 C6orf48Q9UBA6 75 aa6.86□□□□□ -1.31
CLK3-226ENST00000569406 LELP1Q5T871 98 aa6.85□□□□□ -1.31
CLK3-226ENST00000569406 A0A0G2JQZ4 141 aa6.85□□□□□ -1.31
CLK3-226ENST00000569406 A0A1W2PNN7 141 aa6.85□□□□□ -1.31
CLK3-226ENST00000569406 DNAH10Q8IVF4 4471 aa6.85□□□□□ -1.31
CLK3-226ENST00000569406 MIR22HGQ0VDD5 57 aa6.85□□□□□ -1.31
CLK3-226ENST00000569406 DNAH9Q9NYC9 4486 aa6.84□□□□□ -1.31
CLK3-226ENST00000569406 REG3GQ6UW15 175 aa6.84□□□□□ -1.31
CLK3-226ENST00000569406 A0A096LNI7 61 aa6.83□□□□□ -1.32
CLK3-226ENST00000569406 HRES1P13985 223 aa6.83□□□□□ -1.32
CLK3-226ENST00000569406 A0A1B0GW54 56 aa6.82□□□□□ -1.32
CLK3-226ENST00000569406 PRR34Q9NV39 138 aa6.82□□□□□ -1.32
CLK3-226ENST00000569406 IGKV2-24A0A0C4DH68 120 aa6.81□□□□□ -1.32
CLK3-226ENST00000569406 KRTAP26-1Q6PEX3 210 aa6.8□□□□□ -1.32
CLK3-226ENST00000569406 SPRR4Q96PI1 79 aa6.78□□□□□ -1.32
CLK3-226ENST00000569406 A0A087WSZ3 146 aa6.78□□□□□ -1.32
CLK3-226ENST00000569406 EGFEM1PQ0D2K5 195 aa6.78□□□□□ -1.32
CLK3-226ENST00000569406 KRTAP24-1Q3LI83 254 aa6.78□□□□□ -1.32
CLK3-226ENST00000569406 DYNC2H1Q8NCM8 4307 aaKnown RBP6.77□□□□□ -1.33
CLK3-226ENST00000569406 KRTAP29-1A8MX34 341 aaPredicted RBP6.77□□□□□ -1.33
CLK3-226ENST00000569406 IGLV5-37A0A075B6J1 123 aa6.77□□□□□ -1.33
CLK3-226ENST00000569406 A0A1B0GU69 56 aa6.75□□□□□ -1.33
CLK3-226ENST00000569406 DEFB131BA0A096LNP1 70 aa6.75□□□□□ -1.33
CLK3-226ENST00000569406 SPATA8Q6RVD6 105 aa6.73□□□□□ -1.33
CLK3-226ENST00000569406 A0A087X002 238 aa6.73□□□□□ -1.33
CLK3-226ENST00000569406 FAM168BA1KXE4 195 aa6.71□□□□□ -1.33
CLK3-226ENST00000569406 TNP2Q05952 138 aa6.71□□□□□ -1.34
CLK3-226ENST00000569406 H3BNG1 76 aa6.7□□□□□ -1.34
CLK3-226ENST00000569406 P0C880 135 aa6.7□□□□□ -1.34
CLK3-226ENST00000569406 GVQW2A0A096LPI5 108 aaPredicted RBP6.7□□□□□ -1.34
CLK3-226ENST00000569406 UQCR11O14957 56 aa6.7□□□□□ -1.34
CLK3-226ENST00000569406 C15orf56Q8N910 161 aa6.69□□□□□ -1.34
CLK3-226ENST00000569406 FLG2Q5D862 2391 aaPredicted RBP6.69□□□□□ -1.34
CLK3-226ENST00000569406 A8MWP4 228 aa6.69□□□□□ -1.34
CLK3-226ENST00000569406 PRLHP81277 87 aa6.68□□□□□ -1.34
CLK3-226ENST00000569406 DHRS4-AS1Q9P1J3 65 aa6.68□□□□□ -1.34
CLK3-226ENST00000569406 PLECQ15149 4684 aaKnown RBP6.68□□□□□ -1.34
CLK3-226ENST00000569406 TENM2Q9NT68 2774 aa6.67□□□□□ -1.34
CLK3-226ENST00000569406 ZNF861PO60384 105 aa6.67□□□□□ -1.34
CLK3-226ENST00000569406 KRTAP25-1Q3LHN0 102 aa6.67□□□□□ -1.34
CLK3-226ENST00000569406 UBE2DNLQ8IWF7 75 aa6.67□□□□□ -1.34
CLK3-226ENST00000569406 IGLV8-61A0A075B6I0 122 aa6.66□□□□□ -1.34
CLK3-226ENST00000569406 PRKDCP78527 4128 aaKnown RBP6.66□□□□□ -1.34
CLK3-226ENST00000569406 IGFL1Q6UW32 110 aa6.65□□□□□ -1.34
CLK3-226ENST00000569406 Q6ZRX8 168 aa6.65□□□□□ -1.35
CLK3-226ENST00000569406 STAB2Q8WWQ8 2551 aa6.65□□□□□ -1.35
CLK3-226ENST00000569406 DNAH10OSP0CZ25 163 aa6.64□□□□□ -1.35
CLK3-226ENST00000569406 STARD9Q9P2P6 4700 aa6.64□□□□□ -1.35
CLK3-226ENST00000569406 KRTAP16-1A8MUX0 517 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms