RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 BRK1Q8WUW1 75 aa10.31□□□□□ -0.76
SHMT2-232ENST00000557487 Q1T7F1 81 aa10.31□□□□□ -0.76
SHMT2-232ENST00000557487 MP68P56378 58 aa10.29□□□□□ -0.76
SHMT2-232ENST00000557487 C16orf90A8MZG2 172 aa10.29□□□□□ -0.76
SHMT2-232ENST00000557487 C1orf64Q8NEQ6 169 aa10.29□□□□□ -0.76
SHMT2-232ENST00000557487 H3BPC8 53 aa10.28□□□□□ -0.76
SHMT2-232ENST00000557487 B9D2Q9BPU9 175 aa10.27□□□□□ -0.76
SHMT2-232ENST00000557487 CNBPP62633 177 aaKnown RBP10.26□□□□□ -0.77
SHMT2-232ENST00000557487 A0A087WSZ3 146 aa10.24□□□□□ -0.77
SHMT2-232ENST00000557487 H0Y9J4 135 aa10.24□□□□□ -0.77
SHMT2-232ENST00000557487 SPRR1BP22528 89 aa10.24□□□□□ -0.77
SHMT2-232ENST00000557487 PRKDCP78527 4128 aaKnown RBP10.24□□□□□ -0.77
SHMT2-232ENST00000557487 KRTAP29-1A8MX34 341 aaPredicted RBP10.23□□□□□ -0.77
SHMT2-232ENST00000557487 V9GYY9 64 aa10.23□□□□□ -0.77
SHMT2-232ENST00000557487 UBE2AP49459 152 aa10.22□□□□□ -0.77
SHMT2-232ENST00000557487 A0A096LNI7 61 aa10.21□□□□□ -0.77
SHMT2-232ENST00000557487 TRAV22A0A0B4J277 110 aa10.21□□□□□ -0.77
SHMT2-232ENST00000557487 SPANXA2-OT1Q8N9U9 137 aa10.21□□□□□ -0.77
SHMT2-232ENST00000557487 PRLHP81277 87 aa10.21□□□□□ -0.78
SHMT2-232ENST00000557487 PKIGQ9Y2B9 76 aa10.2□□□□□ -0.78
SHMT2-232ENST00000557487 C14orf177Q52M58 125 aa10.19□□□□□ -0.78
SHMT2-232ENST00000557487 WFDC13Q8IUB5 93 aa10.19□□□□□ -0.78
SHMT2-232ENST00000557487 PRR15Q8IV56 129 aa10.19□□□□□ -0.78
SHMT2-232ENST00000557487 A0A1W2PNN7 141 aa10.17□□□□□ -0.78
SHMT2-232ENST00000557487 A8MWP4 228 aa10.17□□□□□ -0.78
SHMT2-232ENST00000557487 CASC2Q6XLA1 102 aa10.17□□□□□ -0.78
SHMT2-232ENST00000557487 C1orf195Q5TG92 126 aa10.15□□□□□ -0.78
SHMT2-232ENST00000557487 IGKV2-24A0A0C4DH68 120 aa10.15□□□□□ -0.79
SHMT2-232ENST00000557487 A0A0G2JQZ4 141 aa10.15□□□□□ -0.79
SHMT2-232ENST00000557487 DEFB116Q30KQ4 102 aa10.15□□□□□ -0.79
SHMT2-232ENST00000557487 LINC00208Q96KT6 92 aa10.15□□□□□ -0.79
SHMT2-232ENST00000557487 LINC00472Q9H8W2 130 aa10.14□□□□□ -0.79
SHMT2-232ENST00000557487 H0Y9P7 68 aa10.13□□□□□ -0.79
SHMT2-232ENST00000557487 TENM3Q9P273 2699 aa10.11□□□□□ -0.79
SHMT2-232ENST00000557487 DNAH1Q9P2D7 4330 aa10.11□□□□□ -0.79
SHMT2-232ENST00000557487 LRCOL1A6NCL2 159 aa10.11□□□□□ -0.79
SHMT2-232ENST00000557487 DNAH9Q9NYC9 4486 aa10.1□□□□□ -0.79
SHMT2-232ENST00000557487 RPL37AP61513 92 aaKnown RBP10.1□□□□□ -0.79
SHMT2-232ENST00000557487 PRR4Q16378 134 aa10.07□□□□□ -0.8
SHMT2-232ENST00000557487 PHF5AQ7RTV0 110 aaKnown RBP10.07□□□□□ -0.8
SHMT2-232ENST00000557487 TGP01266 2768 aa10.07□□□□□ -0.8
SHMT2-232ENST00000557487 KRTAP1-5Q9BYS1 174 aa10.06□□□□□ -0.8
SHMT2-232ENST00000557487 C9orf163Q8N9P6 203 aa10.05□□□□□ -0.8
SHMT2-232ENST00000557487 WWC2-AS2Q96NR7 200 aa10.05□□□□□ -0.8
SHMT2-232ENST00000557487 LIMD2Q9BT23 127 aa10.05□□□□□ -0.8
SHMT2-232ENST00000557487 PSPHP1O15172 72 aa10.03□□□□□ -0.8
SHMT2-232ENST00000557487 MMP24-AS1A0A0U1RRL7 71 aa10.02□□□□□ -0.81
SHMT2-232ENST00000557487 UBE2DNLQ8IWF7 75 aa10.02□□□□□ -0.81
SHMT2-232ENST00000557487 TP53AIP1Q9HCN2 124 aa10.02□□□□□ -0.81
SHMT2-232ENST00000557487 KRTAP11-1Q8IUC1 163 aa10.01□□□□□ -0.81
SHMT2-232ENST00000557487 COL7A1Q02388 2944 aa10.01□□□□□ -0.81
SHMT2-232ENST00000557487 HUWE1Q7Z6Z7 4374 aaKnown RBP10.01□□□□□ -0.81
SHMT2-232ENST00000557487 KRTAP13-1Q8IUC0 172 aa10□□□□□ -0.81
SHMT2-232ENST00000557487 CHTF8P0CG12 524 aa9.99□□□□□ -0.81
SHMT2-232ENST00000557487 MOBPQ13875 183 aa9.99□□□□□ -0.81
SHMT2-232ENST00000557487 IGLV7-46A0A075B6I9 117 aa9.98□□□□□ -0.81
SHMT2-232ENST00000557487 A8MUN3 132 aa9.98□□□□□ -0.81
SHMT2-232ENST00000557487 ASB16-AS1Q495Z4 193 aa9.98□□□□□ -0.81
SHMT2-232ENST00000557487 Q8N9P0 234 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-232ENST00000557487 APLNQ9ULZ1 77 aa9.97□□□□□ -0.81
SHMT2-232ENST00000557487 Q5VV11 94 aa9.96□□□□□ -0.81
SHMT2-232ENST00000557487 LINC00483Q53H64 154 aa9.92□□□□□ -0.82
SHMT2-232ENST00000557487 PMAIP1Q13794 54 aa9.92□□□□□ -0.82
SHMT2-232ENST00000557487 Q6ZR54 194 aa9.92□□□□□ -0.82
SHMT2-232ENST00000557487 Q96NJ1 140 aa9.92□□□□□ -0.82
SHMT2-232ENST00000557487 ZNF706Q9Y5V0 76 aaPredicted RBP9.92□□□□□ -0.82
SHMT2-232ENST00000557487 STAB2Q8WWQ8 2551 aa9.91□□□□□ -0.82
SHMT2-232ENST00000557487 COA5Q86WW8 74 aa9.9□□□□□ -0.82
SHMT2-232ENST00000557487 LOC101927531A0A1B0GV80 90 aa9.9□□□□□ -0.83
SHMT2-232ENST00000557487 C8orf17Q9NRJ1 99 aa9.9□□□□□ -0.83
SHMT2-232ENST00000557487 Q75L30 129 aa9.88□□□□□ -0.83
SHMT2-232ENST00000557487 NBDYA0A0U1RRE5 68 aa9.87□□□□□ -0.83
SHMT2-232ENST00000557487 CHKB-CPT1BH3BT56 60 aa9.87□□□□□ -0.83
SHMT2-232ENST00000557487 PRR15LQ9BU68 103 aa9.87□□□□□ -0.83
SHMT2-232ENST00000557487 A0A1B0GVX0 72 aa9.86□□□□□ -0.83
SHMT2-232ENST00000557487 SPACA4Q8TDM5 124 aa9.86□□□□□ -0.83
SHMT2-232ENST00000557487 DNAH7Q8WXX0 4024 aa9.85□□□□□ -0.83
SHMT2-232ENST00000557487 CDK2AP2O75956 126 aa9.84□□□□□ -0.83
SHMT2-232ENST00000557487 IGLV9-49A0A0B4J1Y8 123 aa9.84□□□□□ -0.83
SHMT2-232ENST00000557487 Q6ZRN7 208 aaPredicted RBP9.84□□□□□ -0.83
SHMT2-232ENST00000557487 CD164Q04900 197 aa9.82□□□□□ -0.84
SHMT2-232ENST00000557487 PANO1I0J062 215 aa9.81□□□□□ -0.84
SHMT2-232ENST00000557487 MRPL34Q9BQ48 92 aaKnown RBP9.81□□□□□ -0.84
SHMT2-232ENST00000557487 NUPR2A6NF83 97 aa9.8□□□□□ -0.84
SHMT2-232ENST00000557487 LINC01558Q9Y6Z2 57 aa9.8□□□□□ -0.84
SHMT2-232ENST00000557487 SEC61GP60059 68 aa9.79□□□□□ -0.84
SHMT2-232ENST00000557487 PCOTHQ58A44 107 aa9.79□□□□□ -0.84
SHMT2-232ENST00000557487 ATP11AUNQ6ZP68 121 aa9.78□□□□□ -0.84
SHMT2-232ENST00000557487 IGHV6-1A0A0B4J1U7 121 aa9.77□□□□□ -0.85
SHMT2-232ENST00000557487 PLAC8Q9NZF1 115 aa9.76□□□□□ -0.85
SHMT2-232ENST00000557487 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-232ENST00000557487 NDUFS5O43920 106 aa9.76□□□□□ -0.85
SHMT2-232ENST00000557487 A6NED7 52 aa9.74□□□□□ -0.85
SHMT2-232ENST00000557487 STARD9Q9P2P6 4700 aa9.74□□□□□ -0.85
SHMT2-232ENST00000557487 IGLV5-52A0A0A0MRZ9 124 aa9.74□□□□□ -0.85
SHMT2-232ENST00000557487 CSMD3Q7Z407 3707 aa9.73□□□□□ -0.85
SHMT2-232ENST00000557487 ZNF861PO60384 105 aa9.72□□□□□ -0.85
SHMT2-232ENST00000557487 CDC42SE1Q9NRR8 79 aa9.72□□□□□ -0.85
SHMT2-232ENST00000557487 A0A087WTM6 91 aa9.7□□□□□ -0.86
SHMT2-232ENST00000557487 LCA10Q71F78 164 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms