RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C1orf195Q5TG92 126 aa8.03□□□□□ -1.12
SHMT2-229ENST00000557348 V9GYY9 64 aa8.03□□□□□ -1.12
SHMT2-229ENST00000557348 IGLV5-48A0A075B6I7 105 aa8.02□□□□□ -1.13
SHMT2-229ENST00000557348 Q1T7F1 81 aa8.02□□□□□ -1.13
SHMT2-229ENST00000557348 LINC00476Q8WZB0 136 aa8.02□□□□□ -1.13
SHMT2-229ENST00000557348 LY6G6CO95867 125 aa8.01□□□□□ -1.13
SHMT2-229ENST00000557348 PRR15Q8IV56 129 aa8□□□□□ -1.13
SHMT2-229ENST00000557348 BRK1Q8WUW1 75 aa8□□□□□ -1.13
SHMT2-229ENST00000557348 A0A1W2PNN7 141 aa7.99□□□□□ -1.13
SHMT2-229ENST00000557348 NDUFB1O75438 58 aa7.99□□□□□ -1.13
SHMT2-229ENST00000557348 DNAH1Q9P2D7 4330 aa7.99□□□□□ -1.13
SHMT2-229ENST00000557348 CYP4F30PQ9H0H9 118 aa7.98□□□□□ -1.13
SHMT2-229ENST00000557348 H0Y9J4 135 aa7.98□□□□□ -1.13
SHMT2-229ENST00000557348 UBE2BP63146 152 aa7.98□□□□□ -1.13
SHMT2-229ENST00000557348 DNAH7Q8WXX0 4024 aa7.98□□□□□ -1.13
SHMT2-229ENST00000557348 hDV103S1A0JD37 113 aa7.97□□□□□ -1.13
SHMT2-229ENST00000557348 RTL8CO15255 209 aa7.97□□□□□ -1.13
SHMT2-229ENST00000557348 SPACA4Q8TDM5 124 aa7.96□□□□□ -1.13
SHMT2-229ENST00000557348 Q9BRP9 147 aa7.96□□□□□ -1.13
SHMT2-229ENST00000557348 CHTF8P0CG12 524 aa7.95□□□□□ -1.14
SHMT2-229ENST00000557348 ZCCHC13Q8WW36 166 aaKnown RBP7.94□□□□□ -1.14
SHMT2-229ENST00000557348 CSMD3Q7Z407 3707 aa7.94□□□□□ -1.14
SHMT2-229ENST00000557348 IGLV5-52A0A0A0MRZ9 124 aa7.93□□□□□ -1.14
SHMT2-229ENST00000557348 SCXQ7RTU7 201 aa7.93□□□□□ -1.14
SHMT2-229ENST00000557348 PHF5AQ7RTV0 110 aaKnown RBP7.92□□□□□ -1.14
SHMT2-229ENST00000557348 Q8N377 158 aa7.92□□□□□ -1.14
SHMT2-229ENST00000557348 SPRR4Q96PI1 79 aa7.92□□□□□ -1.14
SHMT2-229ENST00000557348 H3BPC8 53 aa7.91□□□□□ -1.14
SHMT2-229ENST00000557348 DEFB105AQ8NG35 78 aa7.9□□□□□ -1.14
SHMT2-229ENST00000557348 KMT2CQ8NEZ4 4911 aaKnown RBP7.9□□□□□ -1.15
SHMT2-229ENST00000557348 SEC61GP60059 68 aa7.89□□□□□ -1.15
SHMT2-229ENST00000557348 HIGD2AQ9BW72 106 aa7.89□□□□□ -1.15
SHMT2-229ENST00000557348 UBE2AP49459 152 aa7.89□□□□□ -1.15
SHMT2-229ENST00000557348 Q8NBF4 154 aa7.89□□□□□ -1.15
SHMT2-229ENST00000557348 MPLKIPQ8TAP9 179 aa7.89□□□□□ -1.15
SHMT2-229ENST00000557348 PLAC8Q9NZF1 115 aa7.89□□□□□ -1.15
SHMT2-229ENST00000557348 TENM2Q9NT68 2774 aa7.88□□□□□ -1.15
SHMT2-229ENST00000557348 TNP2Q05952 138 aa7.88□□□□□ -1.15
SHMT2-229ENST00000557348 FAM229BQ4G0N7 80 aa7.88□□□□□ -1.15
SHMT2-229ENST00000557348 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.88□□□□□ -1.15
SHMT2-229ENST00000557348 PRLHP81277 87 aa7.87□□□□□ -1.15
SHMT2-229ENST00000557348 SPANXA2-OT1Q8N9U9 137 aa7.86□□□□□ -1.15
SHMT2-229ENST00000557348 PLECQ15149 4684 aaKnown RBP7.86□□□□□ -1.15
SHMT2-229ENST00000557348 PANO1I0J062 215 aa7.86□□□□□ -1.15
SHMT2-229ENST00000557348 PMAIP1Q13794 54 aa7.86□□□□□ -1.15
SHMT2-229ENST00000557348 STARD9Q9P2P6 4700 aa7.85□□□□□ -1.15
SHMT2-229ENST00000557348 SMIM29Q86T20 159 aa7.85□□□□□ -1.15
SHMT2-229ENST00000557348 ST20-AS1Q8NBB2 130 aa7.85□□□□□ -1.15
SHMT2-229ENST00000557348 C1orf64Q8NEQ6 169 aa7.85□□□□□ -1.15
SHMT2-229ENST00000557348 LYSTQ99698 3801 aa7.85□□□□□ -1.15
SHMT2-229ENST00000557348 SPRR1BP22528 89 aa7.84□□□□□ -1.15
SHMT2-229ENST00000557348 VPS13DQ5THJ4 4388 aa7.84□□□□□ -1.15
SHMT2-229ENST00000557348 MP68P56378 58 aa7.83□□□□□ -1.16
SHMT2-229ENST00000557348 C1orf137Q5JT78 98 aa7.83□□□□□ -1.16
SHMT2-229ENST00000557348 IGLV8-61A0A075B6I0 122 aa7.83□□□□□ -1.16
SHMT2-229ENST00000557348 HCG22E2RYF7 251 aa7.83□□□□□ -1.16
SHMT2-229ENST00000557348 Q8N9L7 120 aa7.83□□□□□ -1.16
SHMT2-229ENST00000557348 KRTAP13-1Q8IUC0 172 aa7.82□□□□□ -1.16
SHMT2-229ENST00000557348 LIMD2Q9BT23 127 aa7.82□□□□□ -1.16
SHMT2-229ENST00000557348 ZNF706Q9Y5V0 76 aaPredicted RBP7.82□□□□□ -1.16
SHMT2-229ENST00000557348 A0A1W2PNM2 257 aa7.81□□□□□ -1.16
SHMT2-229ENST00000557348 KRTAP11-1Q8IUC1 163 aa7.81□□□□□ -1.16
SHMT2-229ENST00000557348 RYR3Q15413 4870 aa7.81□□□□□ -1.16
SHMT2-229ENST00000557348 FAM30AQ9NZY2 134 aa7.8□□□□□ -1.16
SHMT2-229ENST00000557348 DSCR10P59022 87 aa7.79□□□□□ -1.16
SHMT2-229ENST00000557348 TRAV22A0A0B4J277 110 aa7.77□□□□□ -1.17
SHMT2-229ENST00000557348 SACSQ9NZJ4 4579 aa7.77□□□□□ -1.17
SHMT2-229ENST00000557348 ALMS1Q8TCU4 4167 aa7.76□□□□□ -1.17
SHMT2-229ENST00000557348 PSORS1C2Q9UIG4 136 aa7.76□□□□□ -1.17
SHMT2-229ENST00000557348 RPL37AP61513 92 aaKnown RBP7.76□□□□□ -1.17
SHMT2-229ENST00000557348 RYR2Q92736 4967 aa7.75□□□□□ -1.17
SHMT2-229ENST00000557348 ZNF861PO60384 105 aa7.75□□□□□ -1.17
SHMT2-229ENST00000557348 CD164Q04900 197 aa7.75□□□□□ -1.17
SHMT2-229ENST00000557348 KRTAP10-2P60368 255 aa7.74□□□□□ -1.17
SHMT2-229ENST00000557348 Q6ZSA8 131 aa7.74□□□□□ -1.17
SHMT2-229ENST00000557348 DNAH10Q8IVF4 4471 aa7.74□□□□□ -1.17
SHMT2-229ENST00000557348 DNAH6Q9C0G6 4158 aa7.73□□□□□ -1.17
SHMT2-229ENST00000557348 LINC00483Q53H64 154 aa7.73□□□□□ -1.17
SHMT2-229ENST00000557348 IGFL1Q6UW32 110 aa7.73□□□□□ -1.17
SHMT2-229ENST00000557348 K7EQZ3 153 aa7.71□□□□□ -1.18
SHMT2-229ENST00000557348 CIRBP-AS1Q8TBR5 109 aa7.7□□□□□ -1.18
SHMT2-229ENST00000557348 IGLV7-43P04211 117 aa7.7□□□□□ -1.18
SHMT2-229ENST00000557348 LINC00208Q96KT6 92 aa7.69□□□□□ -1.18
SHMT2-229ENST00000557348 KRTAP29-1A8MX34 341 aaPredicted RBP7.68□□□□□ -1.18
SHMT2-229ENST00000557348 ATP11AUNQ6ZP68 121 aa7.68□□□□□ -1.18
SHMT2-229ENST00000557348 LOC101927531A0A1B0GV80 90 aa7.67□□□□□ -1.18
SHMT2-229ENST00000557348 NDUFS5O43920 106 aa7.67□□□□□ -1.18
SHMT2-229ENST00000557348 KRTAP10-1P60331 282 aa7.67□□□□□ -1.18
SHMT2-229ENST00000557348 KMT2AQ03164 3969 aa7.66□□□□□ -1.18
SHMT2-229ENST00000557348 Q5VV11 94 aa7.66□□□□□ -1.18
SHMT2-229ENST00000557348 Q75L30 129 aa7.65□□□□□ -1.18
SHMT2-229ENST00000557348 Q8N9P0 234 aaPredicted RBP7.65□□□□□ -1.18
SHMT2-229ENST00000557348 PSPHP1O15172 72 aa7.64□□□□□ -1.19
SHMT2-229ENST00000557348 HYDINQ4G0P3 5121 aa7.64□□□□□ -1.19
SHMT2-229ENST00000557348 A0A087WSZ3 146 aa7.63□□□□□ -1.19
SHMT2-229ENST00000557348 A8MUN3 132 aa7.63□□□□□ -1.19
SHMT2-229ENST00000557348 KTN1-AS1Q86SY8 53 aa7.63□□□□□ -1.19
SHMT2-229ENST00000557348 H0Y9P7 68 aa7.62□□□□□ -1.19
SHMT2-229ENST00000557348 IGLV7-46A0A075B6I9 117 aa7.61□□□□□ -1.19
SHMT2-229ENST00000557348 TP53AIP1Q9HCN2 124 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms