RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 A0A1W2PNM2 257 aa7.87□□□□□ -1.15
SHMT2-207ENST00000553837 CHKB-CPT1BH3BT56 60 aa7.87□□□□□ -1.15
SHMT2-207ENST00000553837 C7orf65Q6ZTY9 151 aa7.87□□□□□ -1.15
SHMT2-207ENST00000553837 HCG22E2RYF7 251 aa7.86□□□□□ -1.15
SHMT2-207ENST00000553837 DHRS4-AS1Q9P1J3 65 aa7.86□□□□□ -1.15
SHMT2-207ENST00000553837 DSCR10P59022 87 aa7.85□□□□□ -1.15
SHMT2-207ENST00000553837 C1orf137Q5JT78 98 aa7.85□□□□□ -1.15
SHMT2-207ENST00000553837 COL7A1Q02388 2944 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 Q8NBF4 154 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 FAM168BA1KXE4 195 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 A8MU10 97 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 LCA10Q71F78 164 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 SPTSSBQ8NFR3 76 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 C7orf33Q8WU49 177 aa7.84□□□□□ -1.15
SHMT2-207ENST00000553837 C8orf87E5RJ46 101 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 NKAPP1Q8N9T2 125 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 SPRR4Q96PI1 79 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 MGAM2Q2M2H8 2515 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 DNAH10Q8IVF4 4471 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 Q75L30 129 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 KRTAP7-1Q8IUC3 87 aa7.83□□□□□ -1.16
SHMT2-207ENST00000553837 K7EQZ3 153 aa7.82□□□□□ -1.16
SHMT2-207ENST00000553837 TLX1NBP0CAT3 122 aa7.81□□□□□ -1.16
SHMT2-207ENST00000553837 TNP2Q05952 138 aa7.81□□□□□ -1.16
SHMT2-207ENST00000553837 PRR4Q16378 134 aa7.81□□□□□ -1.16
SHMT2-207ENST00000553837 ST20-AS1Q8NBB2 130 aa7.81□□□□□ -1.16
SHMT2-207ENST00000553837 Q8N9P0 234 aaPredicted RBP7.81□□□□□ -1.16
SHMT2-207ENST00000553837 MP68P56378 58 aa7.8□□□□□ -1.16
SHMT2-207ENST00000553837 RPL37AP8A6NKH3 93 aa7.79□□□□□ -1.16
SHMT2-207ENST00000553837 Q6ZRX8 168 aa7.79□□□□□ -1.16
SHMT2-207ENST00000553837 Q9BRP9 147 aa7.79□□□□□ -1.16
SHMT2-207ENST00000553837 CDC42SE1Q9NRR8 79 aa7.79□□□□□ -1.16
SHMT2-207ENST00000553837 B9D2Q9BPU9 175 aa7.78□□□□□ -1.16
SHMT2-207ENST00000553837 KRTAP1-5Q9BYS1 174 aa7.78□□□□□ -1.16
SHMT2-207ENST00000553837 STAB2Q8WWQ8 2551 aa7.78□□□□□ -1.16
SHMT2-207ENST00000553837 DNAH9Q9NYC9 4486 aa7.78□□□□□ -1.16
SHMT2-207ENST00000553837 LOC101927531A0A1B0GV80 90 aa7.78□□□□□ -1.16
SHMT2-207ENST00000553837 PRR15LQ9BU68 103 aa7.78□□□□□ -1.16
SHMT2-207ENST00000553837 SPANXA2-OT1Q8N9U9 137 aa7.77□□□□□ -1.17
SHMT2-207ENST00000553837 PLA2G2DQ9UNK4 145 aa7.77□□□□□ -1.17
SHMT2-207ENST00000553837 KRTAP4-16G5E9R7 235 aaPredicted RBP7.77□□□□□ -1.17
SHMT2-207ENST00000553837 DNAH7Q8WXX0 4024 aa7.76□□□□□ -1.17
SHMT2-207ENST00000553837 A6NED7 52 aa7.76□□□□□ -1.17
SHMT2-207ENST00000553837 IGLV1-50A0A075B6I6 118 aa7.76□□□□□ -1.17
SHMT2-207ENST00000553837 CSMD3Q7Z407 3707 aa7.75□□□□□ -1.17
SHMT2-207ENST00000553837 IGLV5-37A0A075B6J1 123 aa7.75□□□□□ -1.17
SHMT2-207ENST00000553837 H3BS24 57 aa7.75□□□□□ -1.17
SHMT2-207ENST00000553837 LINC00208Q96KT6 92 aa7.75□□□□□ -1.17
SHMT2-207ENST00000553837 SPRR1AP35321 89 aa7.73□□□□□ -1.17
SHMT2-207ENST00000553837 DYNC2H1Q8NCM8 4307 aaKnown RBP7.73□□□□□ -1.17
SHMT2-207ENST00000553837 H3BPC8 53 aa7.72□□□□□ -1.17
SHMT2-207ENST00000553837 WFDC13Q8IUB5 93 aa7.71□□□□□ -1.18
SHMT2-207ENST00000553837 TENM2Q9NT68 2774 aa7.71□□□□□ -1.18
SHMT2-207ENST00000553837 DEFB116Q30KQ4 102 aa7.69□□□□□ -1.18
SHMT2-207ENST00000553837 LINC00476Q8WZB0 136 aa7.69□□□□□ -1.18
SHMT2-207ENST00000553837 APLNQ9ULZ1 77 aa7.69□□□□□ -1.18
SHMT2-207ENST00000553837 A0A096LNI7 61 aa7.68□□□□□ -1.18
SHMT2-207ENST00000553837 PLECQ15149 4684 aaKnown RBP7.68□□□□□ -1.18
SHMT2-207ENST00000553837 H0Y9P7 68 aa7.67□□□□□ -1.18
SHMT2-207ENST00000553837 MOBPQ13875 183 aa7.67□□□□□ -1.18
SHMT2-207ENST00000553837 A0A1W2PNN7 141 aa7.66□□□□□ -1.18
SHMT2-207ENST00000553837 KRTAP29-1A8MX34 341 aaPredicted RBP7.66□□□□□ -1.18
SHMT2-207ENST00000553837 IGKV2-24A0A0C4DH68 120 aa7.66□□□□□ -1.18
SHMT2-207ENST00000553837 IGFL1Q6UW32 110 aa7.65□□□□□ -1.18
SHMT2-207ENST00000553837 CNBPP62633 177 aaKnown RBP7.64□□□□□ -1.19
SHMT2-207ENST00000553837 REG3GQ6UW15 175 aa7.64□□□□□ -1.19
SHMT2-207ENST00000553837 CASC2Q6XLA1 102 aa7.63□□□□□ -1.19
SHMT2-207ENST00000553837 UBE2DNLQ8IWF7 75 aa7.63□□□□□ -1.19
SHMT2-207ENST00000553837 FBN3Q75N90 2809 aa7.63□□□□□ -1.19
SHMT2-207ENST00000553837 A0A087WSZ3 146 aa7.62□□□□□ -1.19
SHMT2-207ENST00000553837 KRTAP11-1Q8IUC1 163 aa7.62□□□□□ -1.19
SHMT2-207ENST00000553837 C9orf163Q8N9P6 203 aa7.62□□□□□ -1.19
SHMT2-207ENST00000553837 CHTF8P0CG12 524 aa7.61□□□□□ -1.19
SHMT2-207ENST00000553837 A0A0G2JQZ4 141 aa7.61□□□□□ -1.19
SHMT2-207ENST00000553837 RPL37AP61513 92 aaKnown RBP7.61□□□□□ -1.19
SHMT2-207ENST00000553837 IGLV8-61A0A075B6I0 122 aa7.6□□□□□ -1.19
SHMT2-207ENST00000553837 LINC01554Q52M75 96 aa7.6□□□□□ -1.19
SHMT2-207ENST00000553837 LINC01558Q9Y6Z2 57 aa7.6□□□□□ -1.19
SHMT2-207ENST00000553837 PRLHP81277 87 aa7.6□□□□□ -1.19
SHMT2-207ENST00000553837 ASB16-AS1Q495Z4 193 aa7.6□□□□□ -1.19
SHMT2-207ENST00000553837 STARD9Q9P2P6 4700 aa7.59□□□□□ -1.19
SHMT2-207ENST00000553837 COA5Q86WW8 74 aa7.59□□□□□ -1.19
SHMT2-207ENST00000553837 SRRM2Q9UQ35 2752 aaKnown RBP7.59□□□□□ -1.19
SHMT2-207ENST00000553837 PLAC8Q9NZF1 115 aa7.59□□□□□ -1.2
SHMT2-207ENST00000553837 IGLV7-46A0A075B6I9 117 aa7.58□□□□□ -1.2
SHMT2-207ENST00000553837 LINC00313P59037 77 aa7.57□□□□□ -1.2
SHMT2-207ENST00000553837 PRKDCP78527 4128 aaKnown RBP7.56□□□□□ -1.2
SHMT2-207ENST00000553837 A0A087X002 238 aa7.56□□□□□ -1.2
SHMT2-207ENST00000553837 A8MWP4 228 aa7.56□□□□□ -1.2
SHMT2-207ENST00000553837 PRR26Q8N8Z3 221 aa7.56□□□□□ -1.2
SHMT2-207ENST00000553837 PANO1I0J062 215 aa7.55□□□□□ -1.2
SHMT2-207ENST00000553837 Q6ZRN7 208 aaPredicted RBP7.55□□□□□ -1.2
SHMT2-207ENST00000553837 NBDYA0A0U1RRE5 68 aa7.54□□□□□ -1.2
SHMT2-207ENST00000553837 VPS13DQ5THJ4 4388 aa7.54□□□□□ -1.2
SHMT2-207ENST00000553837 PLA2G1BP04054 148 aaKnown RBP7.53□□□□□ -1.2
SHMT2-207ENST00000553837 C14orf177Q52M58 125 aa7.52□□□□□ -1.21
SHMT2-207ENST00000553837 LINC00472Q9H8W2 130 aa7.52□□□□□ -1.21
SHMT2-207ENST00000553837 MEGF8Q7Z7M0 2845 aa7.51□□□□□ -1.21
SHMT2-207ENST00000553837 HECTD4Q9Y4D8 3996 aa7.5□□□□□ -1.21
SHMT2-207ENST00000553837 NUPR2A6NF83 97 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms