RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SMG1Q96Q15 3661 aaKnown RBP10.47□□□□□ -0.73
CUX1-213ENST00000549414 APLNQ9ULZ1 77 aa10.47□□□□□ -0.73
CUX1-213ENST00000549414 ANAPC11Q9NYG5 84 aa10.47□□□□□ -0.73
CUX1-213ENST00000549414 TYMSOSQ8TAI1 123 aa10.47□□□□□ -0.73
CUX1-213ENST00000549414 A0A087WTM6 91 aa10.46□□□□□ -0.74
CUX1-213ENST00000549414 IGKV2D-30A0A075B6S6 120 aa10.45□□□□□ -0.74
CUX1-213ENST00000549414 IGKV2-30P06310 120 aa10.45□□□□□ -0.74
CUX1-213ENST00000549414 V9GYY9 64 aa10.45□□□□□ -0.74
CUX1-213ENST00000549414 A0A1W2PNM2 257 aa10.45□□□□□ -0.74
CUX1-213ENST00000549414 PLA2G1BP04054 148 aaKnown RBP10.45□□□□□ -0.74
CUX1-213ENST00000549414 LIMD2Q9BT23 127 aa10.44□□□□□ -0.74
CUX1-213ENST00000549414 PRR15LQ9BU68 103 aa10.44□□□□□ -0.74
CUX1-213ENST00000549414 OBSCN-AS1Q96MR7 158 aa10.43□□□□□ -0.74
CUX1-213ENST00000549414 LINC01600Q96MT4 127 aa10.43□□□□□ -0.74
CUX1-213ENST00000549414 PLA2G2DQ9UNK4 145 aa10.42□□□□□ -0.74
CUX1-213ENST00000549414 C4orf26Q17RF5 130 aa10.4□□□□□ -0.74
CUX1-213ENST00000549414 CSMD1Q96PZ7 3565 aa10.39□□□□□ -0.75
CUX1-213ENST00000549414 CELSR1Q9NYQ6 3014 aa10.39□□□□□ -0.75
CUX1-213ENST00000549414 CNBPP62633 177 aaKnown RBP10.37□□□□□ -0.75
CUX1-213ENST00000549414 TRAV22A0A0B4J277 110 aa10.37□□□□□ -0.75
CUX1-213ENST00000549414 A8MWP4 228 aa10.35□□□□□ -0.75
CUX1-213ENST00000549414 RPS28P62857 69 aaKnown RBP10.33□□□□□ -0.76
CUX1-213ENST00000549414 PSORS1C2Q9UIG4 136 aa10.33□□□□□ -0.76
CUX1-213ENST00000549414 TNP2Q05952 138 aa10.33□□□□□ -0.76
CUX1-213ENST00000549414 J3QL48 77 aa10.32□□□□□ -0.76
CUX1-213ENST00000549414 IGLV5-48A0A075B6I7 105 aa10.31□□□□□ -0.76
CUX1-213ENST00000549414 ZNF861PO60384 105 aa10.31□□□□□ -0.76
CUX1-213ENST00000549414 TP53AIP1Q9HCN2 124 aa10.31□□□□□ -0.76
CUX1-213ENST00000549414 PRR15Q8IV56 129 aa10.3□□□□□ -0.76
CUX1-213ENST00000549414 KRTAP1-5Q9BYS1 174 aa10.3□□□□□ -0.76
CUX1-213ENST00000549414 IGLV5-37A0A075B6J1 123 aa10.29□□□□□ -0.76
CUX1-213ENST00000549414 SVEP1Q4LDE5 3571 aa10.29□□□□□ -0.76
CUX1-213ENST00000549414 KLKP1Q107X0 134 aa10.29□□□□□ -0.76
CUX1-213ENST00000549414 H7BZZ5 65 aa10.28□□□□□ -0.76
CUX1-213ENST00000549414 KRTAP26-1Q6PEX3 210 aa10.28□□□□□ -0.76
CUX1-213ENST00000549414 TENM3Q9P273 2699 aa10.27□□□□□ -0.77
CUX1-213ENST00000549414 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.27□□□□□ -0.77
CUX1-213ENST00000549414 LINC00313P59037 77 aa10.26□□□□□ -0.77
CUX1-213ENST00000549414 SPRR4Q96PI1 79 aa10.24□□□□□ -0.77
CUX1-213ENST00000549414 SPAG11AQ6PDA7 123 aa10.23□□□□□ -0.77
CUX1-213ENST00000549414 K7ERS5 55 aa10.23□□□□□ -0.77
CUX1-213ENST00000549414 Q96NJ1 140 aa10.23□□□□□ -0.77
CUX1-213ENST00000549414 C1orf195Q5TG92 126 aa10.22□□□□□ -0.77
CUX1-213ENST00000549414 MRPL34Q9BQ48 92 aaKnown RBP10.22□□□□□ -0.77
CUX1-213ENST00000549414 PMAIP1Q13794 54 aa10.22□□□□□ -0.77
CUX1-213ENST00000549414 CUBNO60494 3623 aa10.22□□□□□ -0.77
CUX1-213ENST00000549414 C8orf17Q9NRJ1 99 aa10.21□□□□□ -0.77
CUX1-213ENST00000549414 PKD1L1Q8TDX9 2849 aa10.21□□□□□ -0.78
CUX1-213ENST00000549414 DSCR10P59022 87 aa10.2□□□□□ -0.78
CUX1-213ENST00000549414 IGLV7-43P04211 117 aa10.19□□□□□ -0.78
CUX1-213ENST00000549414 H3BPC8 53 aa10.19□□□□□ -0.78
CUX1-213ENST00000549414 A0A1B0GVX0 72 aa10.16□□□□□ -0.78
CUX1-213ENST00000549414 SPRR1AP35321 89 aa10.15□□□□□ -0.78
CUX1-213ENST00000549414 C7orf65Q6ZTY9 151 aa10.15□□□□□ -0.78
CUX1-213ENST00000549414 CYSTM1Q9H1C7 97 aa10.15□□□□□ -0.78
CUX1-213ENST00000549414 C9orf92A6NGG3 77 aa10.14□□□□□ -0.79
CUX1-213ENST00000549414 TENM1Q9UKZ4 2725 aa10.14□□□□□ -0.79
CUX1-213ENST00000549414 LINC00304Q8N9R0 145 aa10.14□□□□□ -0.79
CUX1-213ENST00000549414 LINC00336Q6ZUF6 198 aa10.14□□□□□ -0.79
CUX1-213ENST00000549414 SSBP3-AS1Q7Z2R9 100 aa10.13□□□□□ -0.79
CUX1-213ENST00000549414 OCR1Q9BZK8 76 aa10.13□□□□□ -0.79
CUX1-213ENST00000549414 ACYP2P14621 99 aa10.11□□□□□ -0.79
CUX1-213ENST00000549414 A8MUN3 132 aa10.09□□□□□ -0.79
CUX1-213ENST00000549414 PRO0628Q9UI54 55 aa10.09□□□□□ -0.79
CUX1-213ENST00000549414 ATP11AUNQ6ZP68 121 aa10.09□□□□□ -0.79
CUX1-213ENST00000549414 COA5Q86WW8 74 aa10.08□□□□□ -0.8
CUX1-213ENST00000549414 LOC101927531A0A1B0GV80 90 aa10.07□□□□□ -0.8
CUX1-213ENST00000549414 C8orf87E5RJ46 101 aa10.06□□□□□ -0.8
CUX1-213ENST00000549414 SPENQ96T58 3664 aaKnown RBP10.06□□□□□ -0.8
CUX1-213ENST00000549414 VWFP04275 2813 aa10.05□□□□□ -0.8
CUX1-213ENST00000549414 FBN1P35555 2871 aaKnown RBP10.05□□□□□ -0.8
CUX1-213ENST00000549414 IGLV8-61A0A075B6I0 122 aa10.04□□□□□ -0.8
CUX1-213ENST00000549414 A0A1B0GU69 56 aa10.04□□□□□ -0.8
CUX1-213ENST00000549414 PANO1I0J062 215 aa10.02□□□□□ -0.81
CUX1-213ENST00000549414 OTOGQ6ZRI0 2925 aa10□□□□□ -0.81
CUX1-213ENST00000549414 COX6B2Q6YFQ2 88 aa9.98□□□□□ -0.81
CUX1-213ENST00000549414 PRR26Q8N8Z3 221 aa9.97□□□□□ -0.81
CUX1-213ENST00000549414 CSMD2Q7Z408 3487 aa9.95□□□□□ -0.82
CUX1-213ENST00000549414 NBPF19A0A087WUL8 3843 aa9.95□□□□□ -0.82
CUX1-213ENST00000549414 KRTAP4-16G5E9R7 235 aaPredicted RBP9.95□□□□□ -0.82
CUX1-213ENST00000549414 PLAC8Q9NZF1 115 aa9.94□□□□□ -0.82
CUX1-213ENST00000549414 PDZD2O15018 2839 aa9.94□□□□□ -0.82
CUX1-213ENST00000549414 TENM2Q9NT68 2774 aa9.9□□□□□ -0.82
CUX1-213ENST00000549414 ZFHX3Q15911 3703 aa9.89□□□□□ -0.83
CUX1-213ENST00000549414 SPRR1BP22528 89 aa9.89□□□□□ -0.83
CUX1-213ENST00000549414 MMP24-AS1A0A0U1RRL7 71 aa9.89□□□□□ -0.83
CUX1-213ENST00000549414 LINC00472Q9H8W2 130 aa9.88□□□□□ -0.83
CUX1-213ENST00000549414 KRTAP11-1Q8IUC1 163 aa9.87□□□□□ -0.83
CUX1-213ENST00000549414 KRTAP7-1Q8IUC3 87 aa9.87□□□□□ -0.83
CUX1-213ENST00000549414 KRTAP10-2P60368 255 aa9.86□□□□□ -0.83
CUX1-213ENST00000549414 SRRM2Q9UQ35 2752 aaKnown RBP9.85□□□□□ -0.83
CUX1-213ENST00000549414 Q8N1X5 172 aa9.83□□□□□ -0.84
CUX1-213ENST00000549414 SPANXA2-OT1Q8N9U9 137 aa9.82□□□□□ -0.84
CUX1-213ENST00000549414 FAM229BQ4G0N7 80 aa9.82□□□□□ -0.84
CUX1-213ENST00000549414 KRTAP10-1P60331 282 aa9.79□□□□□ -0.84
CUX1-213ENST00000549414 LCE6AA0A183 80 aa9.78□□□□□ -0.84
CUX1-213ENST00000549414 BSNQ9UPA5 3926 aa9.77□□□□□ -0.85
CUX1-213ENST00000549414 CD164Q04900 197 aa9.77□□□□□ -0.85
CUX1-213ENST00000549414 OXTP01178 125 aa9.77□□□□□ -0.85
CUX1-213ENST00000549414 Q8N9P0 234 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms