RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 HIGD1BQ9P298 99 aa6.93□□□□□ -1.3
USP28-212ENST00000544750 TMA7Q9Y2S6 64 aaKnown RBP6.93□□□□□ -1.3
USP28-212ENST00000544750 C9orf153Q5TBE3 101 aa6.92□□□□□ -1.3
USP28-212ENST00000544750 IGLV5-48A0A075B6I7 105 aa6.91□□□□□ -1.3
USP28-212ENST00000544750 SLC25A34Q6PIV7 304 aa6.91□□□□□ -1.3
USP28-212ENST00000544750 SMIM29Q86T20 159 aa6.9□□□□□ -1.3
USP28-212ENST00000544750 TEX49A0A1B0GTD5 131 aa6.89□□□□□ -1.31
USP28-212ENST00000544750 DEFB105AQ8NG35 78 aa6.89□□□□□ -1.31
USP28-212ENST00000544750 C9orf92A6NGG3 77 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 M0R2T5 61 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 CFC1P0CG37 223 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 TAL2Q16559 108 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 Q1RN00 199 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 LINC00575Q6W349 94 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 LAMTOR3Q9UHA4 124 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 SSPOA2VEC9 5147 aa6.88□□□□□ -1.31
USP28-212ENST00000544750 SMCPP49901 116 aaPredicted RBP6.87□□□□□ -1.31
USP28-212ENST00000544750 NHP2Q9NX24 153 aaKnown RBP6.86□□□□□ -1.31
USP28-212ENST00000544750 A0A0B4J2C4 111 aa6.85□□□□□ -1.31
USP28-212ENST00000544750 CEND1Q8N111 149 aa6.85□□□□□ -1.31
USP28-212ENST00000544750 FXYD2P54710 66 aa6.84□□□□□ -1.31
USP28-212ENST00000544750 VAMP3Q15836 100 aa6.84□□□□□ -1.31
USP28-212ENST00000544750 USH2AO75445 5202 aa6.83□□□□□ -1.32
USP28-212ENST00000544750 hADV29S1A0JD25 119 aa6.83□□□□□ -1.32
USP28-212ENST00000544750 Q6ZQY7 126 aa6.83□□□□□ -1.32
USP28-212ENST00000544750 A0A0G2JQZ4 141 aa6.82□□□□□ -1.32
USP28-212ENST00000544750 H7C2G1 150 aa6.82□□□□□ -1.32
USP28-212ENST00000544750 BVES-AS1Q5T3Y7 98 aa6.82□□□□□ -1.32
USP28-212ENST00000544750 HRCT1Q6UXD1 115 aa6.82□□□□□ -1.32
USP28-212ENST00000544750 RAB37Q96AX2 223 aa6.82□□□□□ -1.32
USP28-212ENST00000544750 LIMD2Q9BT23 127 aa6.82□□□□□ -1.32
USP28-212ENST00000544750 PRO1933Q9H354 126 aa6.81□□□□□ -1.32
USP28-212ENST00000544750 CD164Q04900 197 aa6.8□□□□□ -1.32
USP28-212ENST00000544750 COX6B2Q6YFQ2 88 aa6.8□□□□□ -1.32
USP28-212ENST00000544750 HSD52Q0P140 79 aa6.79□□□□□ -1.32
USP28-212ENST00000544750 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.79□□□□□ -1.32
USP28-212ENST00000544750 FAM218AQ96MZ4 157 aa6.79□□□□□ -1.32
USP28-212ENST00000544750 TMEM238LA0A1B0GVL6 79 aa6.78□□□□□ -1.32
USP28-212ENST00000544750 A6NJY4 79 aa6.78□□□□□ -1.32
USP28-212ENST00000544750 RPL37P61927 97 aaKnown RBP6.78□□□□□ -1.32
USP28-212ENST00000544750 PRO1854Q9UHT4 67 aa6.78□□□□□ -1.32
USP28-212ENST00000544750 UQCR10Q9UDW1 63 aa6.77□□□□□ -1.33
USP28-212ENST00000544750 K7ERJ3 54 aa6.75□□□□□ -1.33
USP28-212ENST00000544750 Q5XG85 94 aa6.75□□□□□ -1.33
USP28-212ENST00000544750 H0YGX0 51 aa6.74□□□□□ -1.33
USP28-212ENST00000544750 TRIAP1O43715 76 aa6.74□□□□□ -1.33
USP28-212ENST00000544750 PPDPFLQ8WWR9 84 aa6.74□□□□□ -1.33
USP28-212ENST00000544750 FCGBPQ9Y6R7 5405 aaPredicted RBP6.73□□□□□ -1.33
USP28-212ENST00000544750 F8WEM9 126 aa6.73□□□□□ -1.33
USP28-212ENST00000544750 IGFL1Q6UW32 110 aa6.73□□□□□ -1.33
USP28-212ENST00000544750 OCIAD2Q56VL3 154 aa6.72□□□□□ -1.33
USP28-212ENST00000544750 C1orf195Q5TG92 126 aa6.72□□□□□ -1.33
USP28-212ENST00000544750 KRTAP9-8Q9BYQ0 159 aa6.72□□□□□ -1.33
USP28-212ENST00000544750 CLEC2BQ92478 149 aa6.71□□□□□ -1.34
USP28-212ENST00000544750 A0A1B0GX51 115 aa6.7□□□□□ -1.34
USP28-212ENST00000544750 Q6JHZ5 121 aa6.7□□□□□ -1.34
USP28-212ENST00000544750 H3BUT2 72 aa6.69□□□□□ -1.34
USP28-212ENST00000544750 SNHG12Q9BXW3 62 aa6.69□□□□□ -1.34
USP28-212ENST00000544750 TRBV7-7A0A0K0K1E9 115 aa6.68□□□□□ -1.34
USP28-212ENST00000544750 SMIM6P0DI80 62 aa6.67□□□□□ -1.34
USP28-212ENST00000544750 SNCGO76070 127 aa6.66□□□□□ -1.34
USP28-212ENST00000544750 NDUFV3P56181 108 aaKnown RBP6.66□□□□□ -1.34
USP28-212ENST00000544750 PSMB2P49721 201 aa6.65□□□□□ -1.34
USP28-212ENST00000544750 TCL1BO95988 128 aa6.64□□□□□ -1.35
USP28-212ENST00000544750 LOC105371267A0A1B0GV96 52 aa6.63□□□□□ -1.35
USP28-212ENST00000544750 Q6Q795 121 aa6.63□□□□□ -1.35
USP28-212ENST00000544750 FABP2P12104 132 aa6.62□□□□□ -1.35
USP28-212ENST00000544750 KRTAP19-1Q8IUB9 90 aa6.62□□□□□ -1.35
USP28-212ENST00000544750 H3BMG7 143 aa6.61□□□□□ -1.35
USP28-212ENST00000544750 COX6CP09669 75 aa6.61□□□□□ -1.35
USP28-212ENST00000544750 DNAL4O96015 105 aa6.6□□□□□ -1.35
USP28-212ENST00000544750 ORMDL1Q9P0S3 153 aa6.6□□□□□ -1.35
USP28-212ENST00000544750 LST1O00453 97 aa6.59□□□□□ -1.35
USP28-212ENST00000544750 GHRHP01286 108 aa6.59□□□□□ -1.35
USP28-212ENST00000544750 TEN1Q86WV5 123 aa6.59□□□□□ -1.35
USP28-212ENST00000544750 A0A1W2PNM2 257 aa6.58□□□□□ -1.36
USP28-212ENST00000544750 M0R143 59 aa6.58□□□□□ -1.36
USP28-212ENST00000544750 TRACP01848 142 aa6.58□□□□□ -1.36
USP28-212ENST00000544750 A0A1B0GV72 72 aa6.56□□□□□ -1.36
USP28-212ENST00000544750 H3BQ85 93 aa6.56□□□□□ -1.36
USP28-212ENST00000544750 TMEM256-PLSCR3K7ERE1 68 aa6.56□□□□□ -1.36
USP28-212ENST00000544750 MT2AP02795 61 aa6.56□□□□□ -1.36
USP28-212ENST00000544750 Q75L30 129 aa6.56□□□□□ -1.36
USP28-212ENST00000544750 NAA38Q9BRA0 125 aaKnown RBP6.56□□□□□ -1.36
USP28-212ENST00000544750 A0A087WSZ3 146 aa6.55□□□□□ -1.36
USP28-212ENST00000544750 SCGB1C2P0DMR2 95 aa6.55□□□□□ -1.36
USP28-212ENST00000544750 Q96NJ1 140 aa6.55□□□□□ -1.36
USP28-212ENST00000544750 UBE2V1Q13404 147 aa6.54□□□□□ -1.36
USP28-212ENST00000544750 SS18L2Q9UHA2 77 aa6.54□□□□□ -1.36
USP28-212ENST00000544750 TSTD3H0UI37 97 aa6.53□□□□□ -1.36
USP28-212ENST00000544750 ATP11AUNQ6ZP68 121 aa6.53□□□□□ -1.36
USP28-212ENST00000544750 KRTAP9-3Q9BYQ3 159 aa6.53□□□□□ -1.36
USP28-212ENST00000544750 ANKRD29Q8N6D5 301 aa6.52□□□□□ -1.37
USP28-212ENST00000544750 TRBV7-4A0A0J9YYF1 115 aa6.51□□□□□ -1.37
USP28-212ENST00000544750 MT1FP04733 61 aa6.51□□□□□ -1.37
USP28-212ENST00000544750 OBSCN-AS1Q96MR7 158 aa6.5□□□□□ -1.37
USP28-212ENST00000544750 BAALC-AS2P0C853 105 aa6.49□□□□□ -1.37
USP28-212ENST00000544750 MACF1Q9UPN3 7388 aaKnown RBP6.49□□□□□ -1.37
USP28-212ENST00000544750 CCKP06307 115 aa6.48□□□□□ -1.37
USP28-212ENST00000544750 ATXN8Q156A1 80 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms