RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 K7EQZ3 153 aa6.76□□□□□ -1.33
CLIP1-213ENST00000540338 KRTAP7-1Q8IUC3 87 aa6.76□□□□□ -1.33
CLIP1-213ENST00000540338 TRRAPQ9Y4A5 3859 aa6.75□□□□□ -1.33
CLIP1-213ENST00000540338 RPS28P62857 69 aaKnown RBP6.75□□□□□ -1.33
CLIP1-213ENST00000540338 C5orf47Q569G3 176 aa6.75□□□□□ -1.33
CLIP1-213ENST00000540338 FBN1P35555 2871 aaKnown RBP6.75□□□□□ -1.33
CLIP1-213ENST00000540338 SERP1Q9Y6X1 66 aa6.75□□□□□ -1.33
CLIP1-213ENST00000540338 KLKP1Q107X0 134 aa6.74□□□□□ -1.33
CLIP1-213ENST00000540338 TNP2Q05952 138 aa6.73□□□□□ -1.33
CLIP1-213ENST00000540338 MOBPQ13875 183 aa6.73□□□□□ -1.33
CLIP1-213ENST00000540338 SPINK6Q6UWN8 80 aa6.73□□□□□ -1.33
CLIP1-213ENST00000540338 WWC2-AS2Q96NR7 200 aa6.73□□□□□ -1.33
CLIP1-213ENST00000540338 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.73□□□□□ -1.33
CLIP1-213ENST00000540338 RPL37AP61513 92 aaKnown RBP6.73□□□□□ -1.33
CLIP1-213ENST00000540338 CIRBP-AS1Q8TBR5 109 aa6.71□□□□□ -1.33
CLIP1-213ENST00000540338 LINC00208Q96KT6 92 aa6.71□□□□□ -1.33
CLIP1-213ENST00000540338 SPACA4Q8TDM5 124 aa6.71□□□□□ -1.34
CLIP1-213ENST00000540338 C4orf48Q5BLP8 95 aa6.7□□□□□ -1.34
CLIP1-213ENST00000540338 PSORS1C2Q9UIG4 136 aa6.7□□□□□ -1.34
CLIP1-213ENST00000540338 ZNF861PO60384 105 aa6.7□□□□□ -1.34
CLIP1-213ENST00000540338 DSCR10P59022 87 aa6.69□□□□□ -1.34
CLIP1-213ENST00000540338 PKD1L1Q8TDX9 2849 aa6.69□□□□□ -1.34
CLIP1-213ENST00000540338 IGHV6-1A0A0B4J1U7 121 aa6.69□□□□□ -1.34
CLIP1-213ENST00000540338 A8MWP4 228 aa6.69□□□□□ -1.34
CLIP1-213ENST00000540338 H7BZZ5 65 aa6.69□□□□□ -1.34
CLIP1-213ENST00000540338 IGLV8-61A0A075B6I0 122 aa6.68□□□□□ -1.34
CLIP1-213ENST00000540338 SPRR1BP22528 89 aa6.68□□□□□ -1.34
CLIP1-213ENST00000540338 SMIM26A0A096LP01 95 aa6.68□□□□□ -1.34
CLIP1-213ENST00000540338 PRR4Q16378 134 aa6.67□□□□□ -1.34
CLIP1-213ENST00000540338 CYSTM1Q9H1C7 97 aa6.67□□□□□ -1.34
CLIP1-213ENST00000540338 H0Y9P7 68 aa6.67□□□□□ -1.34
CLIP1-213ENST00000540338 PRR15Q8IV56 129 aa6.67□□□□□ -1.34
CLIP1-213ENST00000540338 OCR1Q9BZK8 76 aa6.67□□□□□ -1.34
CLIP1-213ENST00000540338 Q6ZRN7 208 aaPredicted RBP6.66□□□□□ -1.34
CLIP1-213ENST00000540338 PANO1I0J062 215 aa6.65□□□□□ -1.34
CLIP1-213ENST00000540338 hDV103S1A0JD37 113 aa6.65□□□□□ -1.34
CLIP1-213ENST00000540338 PLAC8Q9NZF1 115 aa6.63□□□□□ -1.35
CLIP1-213ENST00000540338 KRTAP11-1Q8IUC1 163 aa6.63□□□□□ -1.35
CLIP1-213ENST00000540338 MPLKIPQ8TAP9 179 aa6.63□□□□□ -1.35
CLIP1-213ENST00000540338 ANAPC11Q9NYG5 84 aa6.63□□□□□ -1.35
CLIP1-213ENST00000540338 A0A0U1RQV1 116 aa6.62□□□□□ -1.35
CLIP1-213ENST00000540338 IGLV7-43P04211 117 aa6.62□□□□□ -1.35
CLIP1-213ENST00000540338 Q6ZR54 194 aa6.62□□□□□ -1.35
CLIP1-213ENST00000540338 C1orf64Q8NEQ6 169 aa6.61□□□□□ -1.35
CLIP1-213ENST00000540338 H3BPC8 53 aa6.6□□□□□ -1.35
CLIP1-213ENST00000540338 TP53AIP1Q9HCN2 124 aa6.6□□□□□ -1.35
CLIP1-213ENST00000540338 TRAV22A0A0B4J277 110 aa6.58□□□□□ -1.36
CLIP1-213ENST00000540338 SSBP3-AS1Q7Z2R9 100 aa6.58□□□□□ -1.36
CLIP1-213ENST00000540338 BRK1Q8WUW1 75 aa6.57□□□□□ -1.36
CLIP1-213ENST00000540338 LINC00472Q9H8W2 130 aa6.56□□□□□ -1.36
CLIP1-213ENST00000540338 C8orf17Q9NRJ1 99 aa6.56□□□□□ -1.36
CLIP1-213ENST00000540338 PCOTHQ58A44 107 aa6.55□□□□□ -1.36
CLIP1-213ENST00000540338 A0A1B0GVX0 72 aa6.55□□□□□ -1.36
CLIP1-213ENST00000540338 LIMD2Q9BT23 127 aa6.54□□□□□ -1.36
CLIP1-213ENST00000540338 SVIPQ8NHG7 77 aa6.53□□□□□ -1.36
CLIP1-213ENST00000540338 MRPL34Q9BQ48 92 aaKnown RBP6.53□□□□□ -1.36
CLIP1-213ENST00000540338 C4orf26Q17RF5 130 aa6.53□□□□□ -1.36
CLIP1-213ENST00000540338 LINC00483Q53H64 154 aa6.52□□□□□ -1.37
CLIP1-213ENST00000540338 KRTAP13-1Q8IUC0 172 aa6.52□□□□□ -1.37
CLIP1-213ENST00000540338 V9GYY9 64 aa6.51□□□□□ -1.37
CLIP1-213ENST00000540338 KRTAP10-2P60368 255 aa6.49□□□□□ -1.37
CLIP1-213ENST00000540338 CHKB-CPT1BH3BT56 60 aa6.49□□□□□ -1.37
CLIP1-213ENST00000540338 MMP24-AS1A0A0U1RRL7 71 aa6.48□□□□□ -1.37
CLIP1-213ENST00000540338 C8orf87E5RJ46 101 aa6.48□□□□□ -1.37
CLIP1-213ENST00000540338 PLA2G1BP04054 148 aaKnown RBP6.48□□□□□ -1.37
CLIP1-213ENST00000540338 LINC00313P59037 77 aa6.48□□□□□ -1.37
CLIP1-213ENST00000540338 CD164Q04900 197 aa6.48□□□□□ -1.37
CLIP1-213ENST00000540338 SPTSSBQ8NFR3 76 aa6.48□□□□□ -1.37
CLIP1-213ENST00000540338 TYMSOSQ8TAI1 123 aa6.48□□□□□ -1.37
CLIP1-213ENST00000540338 RETNLBQ9BQ08 111 aa6.45□□□□□ -1.38
CLIP1-213ENST00000540338 KRTAP29-1A8MX34 341 aaPredicted RBP6.45□□□□□ -1.38
CLIP1-213ENST00000540338 TENM2Q9NT68 2774 aa6.44□□□□□ -1.38
CLIP1-213ENST00000540338 KRTAP10-1P60331 282 aa6.44□□□□□ -1.38
CLIP1-213ENST00000540338 OXTP01178 125 aa6.43□□□□□ -1.38
CLIP1-213ENST00000540338 LINC00336Q6ZUF6 198 aa6.43□□□□□ -1.38
CLIP1-213ENST00000540338 LOC101927531A0A1B0GV80 90 aa6.43□□□□□ -1.38
CLIP1-213ENST00000540338 SPANXA2-OT1Q8N9U9 137 aa6.42□□□□□ -1.38
CLIP1-213ENST00000540338 FAM229BQ4G0N7 80 aa6.42□□□□□ -1.38
CLIP1-213ENST00000540338 PSPHP1O15172 72 aa6.41□□□□□ -1.38
CLIP1-213ENST00000540338 HUWE1Q7Z6Z7 4374 aaKnown RBP6.4□□□□□ -1.38
CLIP1-213ENST00000540338 LCE6AA0A183 80 aa6.4□□□□□ -1.38
CLIP1-213ENST00000540338 FAM229AH3BQW9 127 aa6.4□□□□□ -1.38
CLIP1-213ENST00000540338 CYP4F30PQ9H0H9 118 aa6.4□□□□□ -1.38
CLIP1-213ENST00000540338 ZCCHC13Q8WW36 166 aaKnown RBP6.39□□□□□ -1.39
CLIP1-213ENST00000540338 SMR3BP02814 79 aaPredicted RBP6.38□□□□□ -1.39
CLIP1-213ENST00000540338 KRTAP21-3Q3LHN1 58 aa6.37□□□□□ -1.39
CLIP1-213ENST00000540338 Q5XG85 94 aa6.37□□□□□ -1.39
CLIP1-213ENST00000540338 PRR15LQ9BU68 103 aa6.37□□□□□ -1.39
CLIP1-213ENST00000540338 COA5Q86WW8 74 aa6.36□□□□□ -1.39
CLIP1-213ENST00000540338 LINC00304Q8N9R0 145 aa6.36□□□□□ -1.39
CLIP1-213ENST00000540338 IGKV2D-30A0A075B6S6 120 aa6.36□□□□□ -1.39
CLIP1-213ENST00000540338 IGKV2-30P06310 120 aa6.36□□□□□ -1.39
CLIP1-213ENST00000540338 SPINK1P00995 79 aa6.35□□□□□ -1.39
CLIP1-213ENST00000540338 SPAG11AQ6PDA7 123 aa6.35□□□□□ -1.39
CLIP1-213ENST00000540338 Q96NJ1 140 aa6.35□□□□□ -1.39
CLIP1-213ENST00000540338 FP248Q71RG6 208 aaPredicted RBP6.35□□□□□ -1.39
CLIP1-213ENST00000540338 TGP01266 2768 aa6.34□□□□□ -1.39
CLIP1-213ENST00000540338 ACYP2P14621 99 aa6.34□□□□□ -1.4
CLIP1-213ENST00000540338 PRO0628Q9UI54 55 aa6.33□□□□□ -1.4
CLIP1-213ENST00000540338 IGLV7-46A0A075B6I9 117 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms