RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 CATR1Q13166 79 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 NMSQ5H8A3 153 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 FAM74A4Q5TZK3 123 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 TSC22D3Q99576 134 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 SCN3BQ9NY72 215 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 TNXBP22105 4242 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 TRAV30A0A087WSZ9 112 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 DEFB131BA0A096LNP1 70 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 CRYM-AS1A6NIL9 109 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 H3BNG1 76 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 CORTO00230 105 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 GNG7O60262 68 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 GNG2P59768 71 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 ARPC4P59998 168 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 DEFB1P60022 68 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 Q56UQ5 140 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 COX7B2Q8TF08 81 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 SMIM4Q8WVI0 70 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 PRR15LQ9BU68 103 aa0.74□□□□□ -2.29
PRKDC-208ENST00000536710 DMBT1Q9UGM3 2413 aaPredicted RBP0.74□□□□□ -2.29
PRKDC-208ENST00000536710 A0A096LPF7 62 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 SNAPC5O75971 98 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 IL5P05113 134 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 SPART-AS1P0CW21 52 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 IGLC2P0DOY2 106 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 PSMG4Q5JS54 123 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 TMEM263Q8WUH6 116 aaKnown RBP0.73□□□□□ -2.29
PRKDC-208ENST00000536710 S100A16Q96FQ6 103 aaKnown RBP0.73□□□□□ -2.29
PRKDC-208ENST00000536710 TRGV9Q99603 122 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 NAA60Q9H7X0 242 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 RPRMQ9NS64 109 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 TMEM242Q9NWH2 141 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 RABAC1Q9UI14 185 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 V9GYH0 126 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 LRP2P98164 4655 aa0.73□□□□□ -2.29
PRKDC-208ENST00000536710 MUC2Q02817 5179 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 A0A087WTM6 91 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 A0A087WXM4 84 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 SNRPGP15A8MWD9 76 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 H3BQ15 152 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 K7EP13 123 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 SPINK4O60575 86 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 CFDP00746 253 aaPredicted RBP0.72□□□□□ -2.29
PRKDC-208ENST00000536710 IFNA17P01571 189 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 AKAIN1P0CW23 69 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 MT1HL1P0DM35 61 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 SNCAP37840 140 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 MRPS10P82664 201 aaKnown RBP0.72□□□□□ -2.29
PRKDC-208ENST00000536710 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 TDRG1Q3Y452 100 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 C9orf116Q5BN46 136 aaPredicted RBP0.72□□□□□ -2.29
PRKDC-208ENST00000536710 Q5VSD8 79 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 MGST2Q99735 147 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 CACFD1Q9UGQ2 172 aa0.72□□□□□ -2.29
PRKDC-208ENST00000536710 TIMM8BQ9Y5J9 83 aaPredicted RBP0.72□□□□□ -2.29
PRKDC-208ENST00000536710 SMIM31A0A1B0GVY4 71 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 CEBPZOSA8MTT3 80 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 M0R3E3 92 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 SFT2D2O95562 160 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 NMBP08949 121 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 KRTAP2-3P0C7H8 128 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 DEFB130BP0DP73 79 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 DEFB130AP0DP74 79 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 CCL18P55774 89 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 UBE2G1P62253 170 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 WFDC2Q14508 124 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 Q6AWC8 147 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 WFDC10BQ8IUB3 73 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 KCNRGQ8N5I3 272 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 FAM167A-AS1Q96KT0 104 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 PDCD10Q9BUL8 212 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 KRTAP2-4Q9BYR9 128 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 KRTAP2-1Q9BYU5 128 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 Q9H521 79 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 NPVFQ9HCQ7 196 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 NOP10Q9NPE3 64 aaKnown RBP0.71□□□□□ -2.3
PRKDC-208ENST00000536710 V9GYV3 84 aa0.71□□□□□ -2.3
PRKDC-208ENST00000536710 LPAP08519 4548 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 PIGBOS1A0A0B4J2F0 54 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 FAM25AB3EWG3 89 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 FAM25CB3EWG5 89 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 FAM25GB3EWG6 89 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 SSSCA1O60232 199 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 SNCGO76070 127 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 NDUFB6O95139 128 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 SMR3BP02814 79 aaPredicted RBP0.7□□□□□ -2.3
PRKDC-208ENST00000536710 SFTA3P0C7M3 94 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 IAPPP10997 89 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 HTN3P15516 51 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 HAMPP81172 84 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 LINC01556Q5JQF7 62 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 C10orf113Q5VZT2 155 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 SPINK6Q6UWN8 80 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 UBE2DNLQ8IWF7 75 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 AGPAT4-IT1Q9H0P7 198 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 PSENENQ9NZ42 101 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 PRO0255Q9UI72 69 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 SCP2D1Q9UJQ7 156 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 LENEPQ9Y5L5 61 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms