RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZFHX2Q9C0A1 2572 aaPredicted RBP2.89□□□□□ -1.95
CD44-236ENST00000533222 DEFB123Q8N688 67 aa2.89□□□□□ -1.95
CD44-236ENST00000533222 ZZEF1O43149 2961 aa2.89□□□□□ -1.95
CD44-236ENST00000533222 NBEAQ8NFP9 2946 aa2.89□□□□□ -1.95
CD44-236ENST00000533222 APC2O95996 2303 aa2.88□□□□□ -1.95
CD44-236ENST00000533222 AKAP6Q13023 2319 aa2.88□□□□□ -1.95
CD44-236ENST00000533222 BRD3OSQ6XYD6 125 aa2.88□□□□□ -1.95
CD44-236ENST00000533222 R4GN34 69 aa2.87□□□□□ -1.95
CD44-236ENST00000533222 TENM2Q9NT68 2774 aa2.87□□□□□ -1.95
CD44-236ENST00000533222 PCNX1Q96RV3 2341 aa2.85□□□□□ -1.95
CD44-236ENST00000533222 KRTAP12-2P59991 146 aa2.85□□□□□ -1.95
CD44-236ENST00000533222 UTRNP46939 3433 aa2.85□□□□□ -1.95
CD44-236ENST00000533222 GPR179Q6PRD1 2367 aa2.85□□□□□ -1.95
CD44-236ENST00000533222 EP300Q09472 2414 aaPredicted RBP2.83□□□□□ -1.96
CD44-236ENST00000533222 CFAP54Q96N23 3096 aa2.83□□□□□ -1.96
CD44-236ENST00000533222 SPACA4Q8TDM5 124 aa2.83□□□□□ -1.96
CD44-236ENST00000533222 ZDBF2Q9HCK1 2354 aa2.83□□□□□ -1.96
CD44-236ENST00000533222 RANBP2P49792 3224 aaKnown RBP2.83□□□□□ -1.96
CD44-236ENST00000533222 CHD6Q8TD26 2715 aa2.83□□□□□ -1.96
CD44-236ENST00000533222 LINC01556Q5JQF7 62 aa2.82□□□□□ -1.96
CD44-236ENST00000533222 SPTBN4Q9H254 2564 aa2.82□□□□□ -1.96
CD44-236ENST00000533222 DEFB136Q30KP8 78 aa2.8□□□□□ -1.96
CD44-236ENST00000533222 PP632Q6XCG6 107 aa2.8□□□□□ -1.96
CD44-236ENST00000533222 KRTAP13-1Q8IUC0 172 aa2.8□□□□□ -1.96
CD44-236ENST00000533222 RP1L1Q8IWN7 2480 aaPredicted RBP2.8□□□□□ -1.96
CD44-236ENST00000533222 PTPRZ1P23471 2315 aaPredicted RBP2.8□□□□□ -1.96
CD44-236ENST00000533222 VPS13AQ96RL7 3174 aa2.79□□□□□ -1.96
CD44-236ENST00000533222 C2CD3Q4AC94 2353 aa2.79□□□□□ -1.96
CD44-236ENST00000533222 A0A096LPF7 62 aa2.79□□□□□ -1.96
CD44-236ENST00000533222 DEFB124Q8NES8 71 aa2.79□□□□□ -1.96
CD44-236ENST00000533222 MAP1AP78559 2803 aaPredicted RBP2.79□□□□□ -1.96
CD44-236ENST00000533222 NCOR1O75376 2440 aa2.79□□□□□ -1.96
CD44-236ENST00000533222 OTOGQ6ZRI0 2925 aa2.79□□□□□ -1.96
CD44-236ENST00000533222 CACNA1HO95180 2353 aa2.78□□□□□ -1.96
CD44-236ENST00000533222 UBE2DNLQ8IWF7 75 aa2.78□□□□□ -1.96
CD44-236ENST00000533222 AKAP13Q12802 2813 aa2.78□□□□□ -1.97
CD44-236ENST00000533222 FLG2Q5D862 2391 aaPredicted RBP2.78□□□□□ -1.97
CD44-236ENST00000533222 ROS1P08922 2347 aa2.77□□□□□ -1.97
CD44-236ENST00000533222 SPART-AS1P0CW21 52 aa2.76□□□□□ -1.97
CD44-236ENST00000533222 PRLHP81277 87 aa2.76□□□□□ -1.97
CD44-236ENST00000533222 ASH1LQ9NR48 2969 aaKnown RBP2.76□□□□□ -1.97
CD44-236ENST00000533222 PIEZO2Q9H5I5 2752 aa2.75□□□□□ -1.97
CD44-236ENST00000533222 SPTBN5Q9NRC6 3674 aaKnown RBP2.75□□□□□ -1.97
CD44-236ENST00000533222 SPRR5A0A1B0GTR4 108 aa2.75□□□□□ -1.97
CD44-236ENST00000533222 DNAH12Q6ZR08 3092 aa2.74□□□□□ -1.97
CD44-236ENST00000533222 C10orf95Q9H7T3 257 aa2.74□□□□□ -1.97
CD44-236ENST00000533222 GVINP1Q7Z2Y8 2422 aa2.74□□□□□ -1.97
CD44-236ENST00000533222 KALRNO60229 2985 aa2.74□□□□□ -1.97
CD44-236ENST00000533222 SZT2Q5T011 3432 aa2.74□□□□□ -1.97
CD44-236ENST00000533222 CREBBPQ92793 2442 aa2.73□□□□□ -1.97
CD44-236ENST00000533222 PRUNE2Q8WUY3 3088 aa2.73□□□□□ -1.97
CD44-236ENST00000533222 S4R3F8 94 aa2.73□□□□□ -1.97
CD44-236ENST00000533222 ITPR1Q14643 2758 aa2.73□□□□□ -1.97
CD44-236ENST00000533222 UBR5O95071 2799 aaPredicted RBP2.72□□□□□ -1.97
CD44-236ENST00000533222 NCOR2Q9Y618 2525 aa2.72□□□□□ -1.97
CD44-236ENST00000533222 CELSR2Q9HCU4 2923 aa2.72□□□□□ -1.97
CD44-236ENST00000533222 FRYLO94915 3013 aa2.71□□□□□ -1.98
CD44-236ENST00000533222 MKI67P46013 3256 aaKnown RBP2.7□□□□□ -1.98
CD44-236ENST00000533222 UNC80Q8N2C7 3258 aa2.7□□□□□ -1.98
CD44-236ENST00000533222 FRYQ5TBA9 3013 aa2.7□□□□□ -1.98
CD44-236ENST00000533222 HIVEP2P31629 2446 aa2.7□□□□□ -1.98
CD44-236ENST00000533222 CFAP47Q6ZTR5 3102 aa2.7□□□□□ -1.98
CD44-236ENST00000533222 SPINK1P00995 79 aa2.69□□□□□ -1.98
CD44-236ENST00000533222 KRTAP5-1Q6L8H4 278 aa2.69□□□□□ -1.98
CD44-236ENST00000533222 ANKHD1Q8IWZ3 2542 aaKnown RBP2.69□□□□□ -1.98
CD44-236ENST00000533222 TRIOO75962 3097 aa2.68□□□□□ -1.98
CD44-236ENST00000533222 CSPG4Q6UVK1 2322 aa2.67□□□□□ -1.98
CD44-236ENST00000533222 LRBAP50851 2863 aa2.67□□□□□ -1.98
CD44-236ENST00000533222 SPG11Q96JI7 2443 aa2.66□□□□□ -1.98
CD44-236ENST00000533222 NBASA2RRP1 2371 aa2.66□□□□□ -1.98
CD44-236ENST00000533222 FAM208BQ5VWN6 2430 aa2.66□□□□□ -1.98
CD44-236ENST00000533222 USP34Q70CQ2 3546 aa2.64□□□□□ -1.99
CD44-236ENST00000533222 A0A096LNI7 61 aa2.64□□□□□ -1.99
CD44-236ENST00000533222 M0QZ58 72 aa2.64□□□□□ -1.99
CD44-236ENST00000533222 DSPP15924 2871 aaKnown RBP2.64□□□□□ -1.99
CD44-236ENST00000533222 TRANK1O15050 2925 aa2.64□□□□□ -1.99
CD44-236ENST00000533222 ABCA2Q9BZC7 2435 aa2.63□□□□□ -1.99
CD44-236ENST00000533222 Q5VSD8 79 aa2.63□□□□□ -1.99
CD44-236ENST00000533222 BOD1L1Q8NFC6 3051 aa2.63□□□□□ -1.99
CD44-236ENST00000533222 XIRP2A4UGR9 3374 aa2.63□□□□□ -1.99
CD44-236ENST00000533222 CHD9Q3L8U1 2897 aa2.63□□□□□ -1.99
CD44-236ENST00000533222 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
CD44-236ENST00000533222 APLNQ9ULZ1 77 aa2.62□□□□□ -1.99
CD44-236ENST00000533222 DMDP11532 3685 aa2.62□□□□□ -1.99
CD44-236ENST00000533222 RIF1Q5UIP0 2472 aaKnown RBP2.62□□□□□ -1.99
CD44-236ENST00000533222 VWFP04275 2813 aa2.61□□□□□ -1.99
CD44-236ENST00000533222 ATRXP46100 2492 aa2.61□□□□□ -1.99
CD44-236ENST00000533222 WDFY4Q6ZS81 3184 aa2.61□□□□□ -1.99
CD44-236ENST00000533222 FN1P02751 2386 aaKnown RBP2.6□□□□□ -1.99
CD44-236ENST00000533222 NAV2Q8IVL1 2488 aa2.6□□□□□ -1.99
CD44-236ENST00000533222 OTOGLQ3ZCN5 2332 aa2.6□□□□□ -1.99
CD44-236ENST00000533222 ZNF462Q96JM2 2506 aa2.6□□□□□ -1.99
CD44-236ENST00000533222 KRTAP5-9P26371 169 aa2.59□□□□□ -1.99
CD44-236ENST00000533222 RPS29P62273 56 aaKnown RBP2.59□□□□□ -1.99
CD44-236ENST00000533222 DNAH14Q0VDD8 3507 aa2.59□□□□□ -2
CD44-236ENST00000533222 PRRC2CQ9Y520 2896 aaKnown RBP2.59□□□□□ -2
CD44-236ENST00000533222 KRTAP10-8P60410 259 aa2.58□□□□□ -2
CD44-236ENST00000533222 KRTAP13-4Q3LI77 160 aa2.58□□□□□ -2
CD44-236ENST00000533222 SPINK6Q6UWN8 80 aa2.58□□□□□ -2
CD44-236ENST00000533222 F8P00451 2351 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms