RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 COX7BP24311 80 aa7.86□□□□□ -1.15
CPSF1-201ENST00000526271 SEC61BP60468 96 aaKnown RBP7.86□□□□□ -1.15
CPSF1-201ENST00000526271 Q9BRP9 147 aa7.86□□□□□ -1.15
CPSF1-201ENST00000526271 H7C2G1 150 aa7.85□□□□□ -1.15
CPSF1-201ENST00000526271 VAMP3Q15836 100 aa7.85□□□□□ -1.15
CPSF1-201ENST00000526271 MOBPQ13875 183 aa7.84□□□□□ -1.15
CPSF1-201ENST00000526271 GAGE2AQ6NT46 116 aa7.83□□□□□ -1.16
CPSF1-201ENST00000526271 DHRS4-AS1Q9P1J3 65 aa7.83□□□□□ -1.16
CPSF1-201ENST00000526271 Q1RN00 199 aa7.82□□□□□ -1.16
CPSF1-201ENST00000526271 FLGP20930 4061 aaPredicted RBP7.82□□□□□ -1.16
CPSF1-201ENST00000526271 IGLV9-49A0A0B4J1Y8 123 aa7.81□□□□□ -1.16
CPSF1-201ENST00000526271 H0YGX0 51 aa7.81□□□□□ -1.16
CPSF1-201ENST00000526271 LORP23490 312 aaPredicted RBP7.81□□□□□ -1.16
CPSF1-201ENST00000526271 RPS29P62273 56 aaKnown RBP7.81□□□□□ -1.16
CPSF1-201ENST00000526271 LINC00575Q6W349 94 aa7.81□□□□□ -1.16
CPSF1-201ENST00000526271 TRIAP1O43715 76 aa7.8□□□□□ -1.16
CPSF1-201ENST00000526271 BATFQ16520 125 aa7.8□□□□□ -1.16
CPSF1-201ENST00000526271 SNHG12Q9BXW3 62 aa7.8□□□□□ -1.16
CPSF1-201ENST00000526271 PCP4L1A6NKN8 68 aa7.79□□□□□ -1.16
CPSF1-201ENST00000526271 SSBP3-AS1Q7Z2R9 100 aa7.78□□□□□ -1.16
CPSF1-201ENST00000526271 hADV29S1A0JD25 119 aa7.77□□□□□ -1.17
CPSF1-201ENST00000526271 PSMB2P49721 201 aa7.77□□□□□ -1.17
CPSF1-201ENST00000526271 KRTAP10-6P60371 365 aaPredicted RBP7.77□□□□□ -1.17
CPSF1-201ENST00000526271 SLC25A20O43772 301 aa7.76□□□□□ -1.17
CPSF1-201ENST00000526271 COX6CP09669 75 aa7.76□□□□□ -1.17
CPSF1-201ENST00000526271 ST20-AS1Q8NBB2 130 aa7.76□□□□□ -1.17
CPSF1-201ENST00000526271 FAM218AQ96MZ4 157 aa7.76□□□□□ -1.17
CPSF1-201ENST00000526271 TAX1BP3O14907 124 aa7.75□□□□□ -1.17
CPSF1-201ENST00000526271 PCOTHQ58A44 107 aa7.75□□□□□ -1.17
CPSF1-201ENST00000526271 A0A1B0GX51 115 aa7.74□□□□□ -1.17
CPSF1-201ENST00000526271 SPRR1BP22528 89 aa7.74□□□□□ -1.17
CPSF1-201ENST00000526271 C9orf118A6NHY6 69 aa7.73□□□□□ -1.17
CPSF1-201ENST00000526271 C9orf153Q5TBE3 101 aa7.73□□□□□ -1.17
CPSF1-201ENST00000526271 IGLV5-48A0A075B6I7 105 aa7.72□□□□□ -1.17
CPSF1-201ENST00000526271 SCGB1C2P0DMR2 95 aa7.72□□□□□ -1.17
CPSF1-201ENST00000526271 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.72□□□□□ -1.17
CPSF1-201ENST00000526271 CLEC2BQ92478 149 aa7.72□□□□□ -1.17
CPSF1-201ENST00000526271 SNCGO76070 127 aa7.71□□□□□ -1.18
CPSF1-201ENST00000526271 COL5A1-AS1Q5SY13 56 aa7.71□□□□□ -1.18
CPSF1-201ENST00000526271 NAA38Q9BRA0 125 aaKnown RBP7.71□□□□□ -1.18
CPSF1-201ENST00000526271 TEX49A0A1B0GTD5 131 aa7.7□□□□□ -1.18
CPSF1-201ENST00000526271 H3BUT2 72 aa7.7□□□□□ -1.18
CPSF1-201ENST00000526271 Q6ZQY7 126 aa7.7□□□□□ -1.18
CPSF1-201ENST00000526271 IGLV8-61A0A075B6I0 122 aa7.69□□□□□ -1.18
CPSF1-201ENST00000526271 LST1O00453 97 aa7.69□□□□□ -1.18
CPSF1-201ENST00000526271 DEFB105AQ8NG35 78 aa7.69□□□□□ -1.18
CPSF1-201ENST00000526271 C9orf92A6NGG3 77 aa7.68□□□□□ -1.18
CPSF1-201ENST00000526271 TRACP01848 142 aa7.68□□□□□ -1.18
CPSF1-201ENST00000526271 OCIAD2Q56VL3 154 aa7.68□□□□□ -1.18
CPSF1-201ENST00000526271 SMIM29Q86T20 159 aa7.67□□□□□ -1.18
CPSF1-201ENST00000526271 PPDPFLQ8WWR9 84 aa7.67□□□□□ -1.18
CPSF1-201ENST00000526271 A0A1W2PPM0 123 aa7.66□□□□□ -1.18
CPSF1-201ENST00000526271 TCL1BO95988 128 aa7.66□□□□□ -1.18
CPSF1-201ENST00000526271 TRBV20-1A0A075B6N2 111 aa7.65□□□□□ -1.18
CPSF1-201ENST00000526271 LYRM7Q5U5X0 104 aa7.65□□□□□ -1.18
CPSF1-201ENST00000526271 ATXN8Q156A1 80 aa7.64□□□□□ -1.19
CPSF1-201ENST00000526271 LIMD2Q9BT23 127 aa7.64□□□□□ -1.19
CPSF1-201ENST00000526271 LAMTOR3Q9UHA4 124 aa7.64□□□□□ -1.19
CPSF1-201ENST00000526271 H3BQ85 93 aa7.63□□□□□ -1.19
CPSF1-201ENST00000526271 DNAL4O96015 105 aa7.63□□□□□ -1.19
CPSF1-201ENST00000526271 GHRHP01286 108 aa7.63□□□□□ -1.19
CPSF1-201ENST00000526271 HRCT1Q6UXD1 115 aa7.63□□□□□ -1.19
CPSF1-201ENST00000526271 FABP2P12104 132 aa7.62□□□□□ -1.19
CPSF1-201ENST00000526271 ORMDL1Q9P0S3 153 aa7.62□□□□□ -1.19
CPSF1-201ENST00000526271 TMEM256-PLSCR3K7ERE1 68 aa7.6□□□□□ -1.19
CPSF1-201ENST00000526271 SSPOA2VEC9 5147 aa7.58□□□□□ -1.2
CPSF1-201ENST00000526271 A0A0G2JQZ4 141 aa7.57□□□□□ -1.2
CPSF1-201ENST00000526271 BAALC-AS2P0C853 105 aa7.57□□□□□ -1.2
CPSF1-201ENST00000526271 NDUFV3P56181 108 aaKnown RBP7.57□□□□□ -1.2
CPSF1-201ENST00000526271 UBE2V1Q13404 147 aa7.57□□□□□ -1.2
CPSF1-201ENST00000526271 SPCS1Q9Y6A9 102 aa7.57□□□□□ -1.2
CPSF1-201ENST00000526271 F8WEM9 126 aa7.55□□□□□ -1.2
CPSF1-201ENST00000526271 H3BMG7 143 aa7.55□□□□□ -1.2
CPSF1-201ENST00000526271 CD164Q04900 197 aa7.55□□□□□ -1.2
CPSF1-201ENST00000526271 C1orf195Q5TG92 126 aa7.54□□□□□ -1.2
CPSF1-201ENST00000526271 USH2AO75445 5202 aa7.53□□□□□ -1.2
CPSF1-201ENST00000526271 C9JAW5 83 aa7.53□□□□□ -1.2
CPSF1-201ENST00000526271 K7EP34 96 aa7.53□□□□□ -1.2
CPSF1-201ENST00000526271 RPL37P61927 97 aaKnown RBP7.53□□□□□ -1.2
CPSF1-201ENST00000526271 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.52□□□□□ -1.21
CPSF1-201ENST00000526271 Q6JHZ5 121 aa7.52□□□□□ -1.21
CPSF1-201ENST00000526271 Q5XG85 94 aa7.51□□□□□ -1.21
CPSF1-201ENST00000526271 IGFL1Q6UW32 110 aa7.51□□□□□ -1.21
CPSF1-201ENST00000526271 ANKRD29Q8N6D5 301 aa7.51□□□□□ -1.21
CPSF1-201ENST00000526271 M0R2T5 61 aa7.5□□□□□ -1.21
CPSF1-201ENST00000526271 KRTAP9-7A8MTY7 169 aa7.49□□□□□ -1.21
CPSF1-201ENST00000526271 H3BT86 120 aa7.49□□□□□ -1.21
CPSF1-201ENST00000526271 GTF2H5Q6ZYL4 71 aa7.49□□□□□ -1.21
CPSF1-201ENST00000526271 PRO0461Q9UI25 63 aa7.48□□□□□ -1.21
CPSF1-201ENST00000526271 SMCPP49901 116 aaPredicted RBP7.47□□□□□ -1.21
CPSF1-201ENST00000526271 RBM3P98179 157 aaKnown RBP7.47□□□□□ -1.21
CPSF1-201ENST00000526271 JMJD7-PLA2G4BH0Y9G9 81 aa7.46□□□□□ -1.22
CPSF1-201ENST00000526271 MTURNQ8N3F0 131 aa7.46□□□□□ -1.22
CPSF1-201ENST00000526271 OBSCN-AS1Q96MR7 158 aa7.46□□□□□ -1.22
CPSF1-201ENST00000526271 TRBV7-4A0A0J9YYF1 115 aa7.45□□□□□ -1.22
CPSF1-201ENST00000526271 Q6Q795 121 aa7.45□□□□□ -1.22
CPSF1-201ENST00000526271 KRTAP9-8Q9BYQ0 159 aa7.45□□□□□ -1.22
CPSF1-201ENST00000526271 A0A1B0GV72 72 aa7.43□□□□□ -1.22
CPSF1-201ENST00000526271 COX6B2Q6YFQ2 88 aa7.43□□□□□ -1.22
CPSF1-201ENST00000526271 TEN1Q86WV5 123 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms