RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 URB2Q14146 1524 aaKnown RBP-0.14□□□□□ -2.43
CD44-215ENST00000525241 PLXNC1O60486 1568 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 MROH1Q8NDA8 1641 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 H3BQ15 152 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 APOC3P02656 99 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 PRM1P04553 51 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 IFITM1P13164 125 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 S100A1P23297 94 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 SPRR1AP35321 89 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 KRTAP19-2Q3LHN2 52 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 KRTAP6-1Q3LI64 71 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 NXT2Q9NPJ8 142 aaKnown RBP-0.15□□□□□ -2.43
CD44-215ENST00000525241 GNG8Q9UK08 70 aa-0.15□□□□□ -2.43
CD44-215ENST00000525241 DDX60Q8IY21 1712 aaKnown RBP-0.16□□□□□ -2.43
CD44-215ENST00000525241 NLRP1Q9C000 1473 aa-0.16□□□□□ -2.43
CD44-215ENST00000525241 MGPP08493 103 aa-0.16□□□□□ -2.44
CD44-215ENST00000525241 GNG11P61952 73 aa-0.16□□□□□ -2.44
CD44-215ENST00000525241 HSD52Q0P140 79 aa-0.16□□□□□ -2.44
CD44-215ENST00000525241 C10orf113Q5VZT2 155 aa-0.16□□□□□ -2.44
CD44-215ENST00000525241 TMEM263Q8WUH6 116 aaKnown RBP-0.16□□□□□ -2.44
CD44-215ENST00000525241 MON2Q7Z3U7 1717 aa-0.16□□□□□ -2.44
CD44-215ENST00000525241 LRRIQ1Q96JM4 1722 aa-0.16□□□□□ -2.44
CD44-215ENST00000525241 LMO7Q8WWI1 1683 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 ALS2Q96Q42 1657 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 TMEM262E9PQX1 116 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 SMIM5Q71RC9 77 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 SVBPQ8N300 66 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 C14orf144Q96I85 54 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 ARHGAP35Q9NRY4 1499 aa-0.17□□□□□ -2.44
CD44-215ENST00000525241 CLTCQ00610 1675 aaKnown RBP-0.18□□□□□ -2.44
CD44-215ENST00000525241 ABCC1P33527 1531 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 ATP7AQ04656 1500 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 DDX60LQ5H9U9 1706 aaKnown RBP-0.18□□□□□ -2.44
CD44-215ENST00000525241 TRBV6-1A0A0K0K1D8 114 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 LINC00959A0A1B0GUT2 108 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 FAM223BA6NKX1 122 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 LOC730098B7Z3J9 87 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 MRPS10P82664 201 aaKnown RBP-0.18□□□□□ -2.44
CD44-215ENST00000525241 DEFB109BQ30KR1 87 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 KRTAP8-1Q8IUC2 63 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 UQCR10Q9UDW1 63 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 PRO1854Q9UHT4 67 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 ARL2-SNX15V9GYD0 113 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 POLA1P09884 1462 aaPredicted RBP-0.18□□□□□ -2.44
CD44-215ENST00000525241 ERICH3Q5RHP9 1530 aa-0.18□□□□□ -2.44
CD44-215ENST00000525241 AKAP12Q02952 1782 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 hADV29S1A0JD25 119 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 NAP1L6A6NFF2 107 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 DEFB124Q8NES8 71 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 LCN9Q8WX39 176 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 CGREF1Q99674 301 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 MANBALQ9NQG1 85 aa-0.19□□□□□ -2.44
CD44-215ENST00000525241 MYH4Q9Y623 1939 aa-0.2□□□□□ -2.44
CD44-215ENST00000525241 CFDP00746 253 aaPredicted RBP-0.2□□□□□ -2.44
CD44-215ENST00000525241 COX6CP09669 75 aa-0.2□□□□□ -2.44
CD44-215ENST00000525241 WHAMMP3Q1A5X7 153 aa-0.2□□□□□ -2.44
CD44-215ENST00000525241 TRPM2O94759 1503 aa-0.2□□□□□ -2.44
CD44-215ENST00000525241 ABCC6O95255 1503 aa-0.2□□□□□ -2.44
CD44-215ENST00000525241 AGLP35573 1532 aa-0.2□□□□□ -2.44
CD44-215ENST00000525241 TROQ12816 1431 aaPredicted RBP-0.21□□□□□ -2.44
CD44-215ENST00000525241 C20orf202A1L168 122 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 K7EQZ3 153 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 S100PP25815 95 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 PIGYQ3MUY2 71 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 SFTA2Q6UW10 78 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 LINC01600Q96MT4 127 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 INO80Q9ULG1 1556 aaPredicted RBP-0.21□□□□□ -2.44
CD44-215ENST00000525241 CDC42BPAQ5VT25 1732 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 MYO5CQ9NQX4 1742 aa-0.21□□□□□ -2.44
CD44-215ENST00000525241 M0R2T5 61 aa-0.22□□□□□ -2.44
CD44-215ENST00000525241 MT1FP04733 61 aa-0.22□□□□□ -2.44
CD44-215ENST00000525241 MT1BP07438 61 aa-0.22□□□□□ -2.44
CD44-215ENST00000525241 SAA2P0DJI9 122 aaPredicted RBP-0.22□□□□□ -2.44
CD44-215ENST00000525241 SPRR1BP22528 89 aa-0.22□□□□□ -2.44
CD44-215ENST00000525241 S100A3P33764 101 aa-0.22□□□□□ -2.44
CD44-215ENST00000525241 SNCAP37840 140 aa-0.22□□□□□ -2.44
CD44-215ENST00000525241 CCDC180Q9P1Z9 1646 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 C4AP0C0L4 1744 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 TRBV7-4A0A0J9YYF1 115 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 CRYM-AS1A6NIL9 109 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 LYNX1G3V0Z9 82 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 H7BZZ5 65 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 MT2AP02795 61 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 COX6B1P14854 86 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 GTF2H5Q6ZYL4 71 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 DEFB104AQ8WTQ1 72 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 FAIMQ9NVQ4 179 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 ANKRD50Q9ULJ7 1429 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 ABCC8Q09428 1581 aa-0.23□□□□□ -2.45
CD44-215ENST00000525241 CRYBG1Q9Y4K1 1723 aa-0.24□□□□□ -2.45
CD44-215ENST00000525241 MT-ATP8P03928 68 aa-0.24□□□□□ -2.45
CD44-215ENST00000525241 ANKRD36BQ8N2N9 1353 aa-0.24□□□□□ -2.45
CD44-215ENST00000525241 CNTLNQ9NXG0 1405 aa-0.24□□□□□ -2.45
CD44-215ENST00000525241 TRAV30A0A087WSZ9 112 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 A0A087WVE0 104 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 FXYD6-FXYD2A0A087WZ82 144 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 TRAPPC2P0DI81 140 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 TRAPPC2BP0DI82 140 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 SEC11AP67812 179 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 C12orf57Q99622 126 aa-0.25□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 230.1 ms