RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 Q5XG85 94 aa9.09□□□□□ -0.95
LSM1-205ENST00000523511 PPDPFLQ8WWR9 84 aa9.09□□□□□ -0.95
LSM1-205ENST00000523511 MUC2Q02817 5179 aa9.09□□□□□ -0.95
LSM1-205ENST00000523511 H0YGX0 51 aa9.08□□□□□ -0.96
LSM1-205ENST00000523511 TCL1BO95988 128 aa9.08□□□□□ -0.96
LSM1-205ENST00000523511 GHRHP01286 108 aa9.08□□□□□ -0.96
LSM1-205ENST00000523511 CFC1BP0CG36 223 aa9.07□□□□□ -0.96
LSM1-205ENST00000523511 CFC1P0CG37 223 aa9.07□□□□□ -0.96
LSM1-205ENST00000523511 Q6JHZ5 121 aa9.07□□□□□ -0.96
LSM1-205ENST00000523511 SNHG12Q9BXW3 62 aa9.07□□□□□ -0.96
LSM1-205ENST00000523511 A0A0B4J2C4 111 aa9.06□□□□□ -0.96
LSM1-205ENST00000523511 ASB16-AS1Q495Z4 193 aa9.06□□□□□ -0.96
LSM1-205ENST00000523511 OCIAD2Q56VL3 154 aa9.06□□□□□ -0.96
LSM1-205ENST00000523511 CEND1Q8N111 149 aa9.04□□□□□ -0.96
LSM1-205ENST00000523511 PRO1854Q9UHT4 67 aa9.02□□□□□ -0.97
LSM1-205ENST00000523511 XP32Q5T750 250 aa9.01□□□□□ -0.97
LSM1-205ENST00000523511 C2orf91Q6ZV80 131 aa9.01□□□□□ -0.97
LSM1-205ENST00000523511 IGLV8-61A0A075B6I0 122 aa9□□□□□ -0.97
LSM1-205ENST00000523511 CLEC2BQ92478 149 aa9□□□□□ -0.97
LSM1-205ENST00000523511 A0A1B0GX51 115 aa8.98□□□□□ -0.97
LSM1-205ENST00000523511 C1orf195Q5TG92 126 aa8.98□□□□□ -0.97
LSM1-205ENST00000523511 A0A0G2JQZ4 141 aa8.97□□□□□ -0.97
LSM1-205ENST00000523511 PYY3Q5JQD4 70 aa8.96□□□□□ -0.98
LSM1-205ENST00000523511 MUC17Q685J3 4493 aa8.95□□□□□ -0.98
LSM1-205ENST00000523511 C9orf92A6NGG3 77 aa8.95□□□□□ -0.98
LSM1-205ENST00000523511 HSD52Q0P140 79 aa8.95□□□□□ -0.98
LSM1-205ENST00000523511 IGFL1Q6UW32 110 aa8.95□□□□□ -0.98
LSM1-205ENST00000523511 TMA7Q9Y2S6 64 aaKnown RBP8.94□□□□□ -0.98
LSM1-205ENST00000523511 TRBV7-7A0A0K0K1E9 115 aa8.93□□□□□ -0.98
LSM1-205ENST00000523511 H3BQ85 93 aa8.93□□□□□ -0.98
LSM1-205ENST00000523511 COX6CP09669 75 aa8.93□□□□□ -0.98
LSM1-205ENST00000523511 PSMB2P49721 201 aa8.92□□□□□ -0.98
LSM1-205ENST00000523511 FXYD2P54710 66 aa8.92□□□□□ -0.98
LSM1-205ENST00000523511 UQCR10Q9UDW1 63 aa8.92□□□□□ -0.98
LSM1-205ENST00000523511 DNAL4O96015 105 aa8.91□□□□□ -0.98
LSM1-205ENST00000523511 NDUFV3P56181 108 aaKnown RBP8.91□□□□□ -0.98
LSM1-205ENST00000523511 FABP2P12104 132 aa8.9□□□□□ -0.98
LSM1-205ENST00000523511 SS18L2Q9UHA2 77 aa8.9□□□□□ -0.98
LSM1-205ENST00000523511 H3BUT2 72 aa8.88□□□□□ -0.99
LSM1-205ENST00000523511 LST1O00453 97 aa8.88□□□□□ -0.99
LSM1-205ENST00000523511 FAM218AQ96MZ4 157 aa8.88□□□□□ -0.99
LSM1-205ENST00000523511 H3BMG7 143 aa8.87□□□□□ -0.99
LSM1-205ENST00000523511 TRIAP1O43715 76 aa8.87□□□□□ -0.99
LSM1-205ENST00000523511 TEN1Q86WV5 123 aa8.87□□□□□ -0.99
LSM1-205ENST00000523511 KRTAP3-3Q9BYR6 98 aa8.87□□□□□ -0.99
LSM1-205ENST00000523511 KRTAP3-2Q9BYR7 98 aa8.87□□□□□ -0.99
LSM1-205ENST00000523511 Q6Q795 121 aa8.86□□□□□ -0.99
LSM1-205ENST00000523511 PCOTHQ58A44 107 aa8.84□□□□□ -0.99
LSM1-205ENST00000523511 ORMDL1Q9P0S3 153 aa8.84□□□□□ -0.99
LSM1-205ENST00000523511 TMEM256-PLSCR3K7ERE1 68 aa8.83□□□□□ -1
LSM1-205ENST00000523511 SCGB1C2P0DMR2 95 aa8.81□□□□□ -1
LSM1-205ENST00000523511 K7ERJ3 54 aa8.8□□□□□ -1
LSM1-205ENST00000523511 LCE2AQ5TA79 106 aaPredicted RBP8.8□□□□□ -1
LSM1-205ENST00000523511 FAT4Q6V0I7 4981 aa8.79□□□□□ -1
LSM1-205ENST00000523511 RPL37P61927 97 aaKnown RBP8.79□□□□□ -1
LSM1-205ENST00000523511 ANKRD29Q8N6D5 301 aa8.79□□□□□ -1
LSM1-205ENST00000523511 KRTAP4-1Q9BYQ7 146 aa8.79□□□□□ -1
LSM1-205ENST00000523511 A0A087WSZ3 146 aa8.77□□□□□ -1.01
LSM1-205ENST00000523511 M0R143 59 aa8.74□□□□□ -1.01
LSM1-205ENST00000523511 TRACP01848 142 aa8.74□□□□□ -1.01
LSM1-205ENST00000523511 UBE2V1Q13404 147 aa8.74□□□□□ -1.01
LSM1-205ENST00000523511 ATP11AUNQ6ZP68 121 aa8.74□□□□□ -1.01
LSM1-205ENST00000523511 OBSCN-AS1Q96MR7 158 aa8.74□□□□□ -1.01
LSM1-205ENST00000523511 TRBV7-4A0A0J9YYF1 115 aa8.73□□□□□ -1.01
LSM1-205ENST00000523511 Q96NJ1 140 aa8.7□□□□□ -1.02
LSM1-205ENST00000523511 A0A1W2PNM2 257 aa8.69□□□□□ -1.02
LSM1-205ENST00000523511 Q75L30 129 aa8.69□□□□□ -1.02
LSM1-205ENST00000523511 RBM3P98179 157 aaKnown RBP8.68□□□□□ -1.02
LSM1-205ENST00000523511 DSCR8Q96T75 97 aa8.68□□□□□ -1.02
LSM1-205ENST00000523511 A0A1B0GV72 72 aa8.67□□□□□ -1.02
LSM1-205ENST00000523511 CCKP06307 115 aa8.67□□□□□ -1.02
LSM1-205ENST00000523511 SMIM6P0DI80 62 aa8.67□□□□□ -1.02
LSM1-205ENST00000523511 C21orf62-AS1Q17RA5 79 aa8.67□□□□□ -1.02
LSM1-205ENST00000523511 BAALC-AS2P0C853 105 aa8.64□□□□□ -1.03
LSM1-205ENST00000523511 ATXN8Q156A1 80 aa8.64□□□□□ -1.03
LSM1-205ENST00000523511 SIGMAR1Q99720 223 aa8.64□□□□□ -1.03
LSM1-205ENST00000523511 IGKV4-1P06312 121 aa8.63□□□□□ -1.03
LSM1-205ENST00000523511 TSTD3H0UI37 97 aa8.62□□□□□ -1.03
LSM1-205ENST00000523511 LINC00313P59037 77 aa8.62□□□□□ -1.03
LSM1-205ENST00000523511 VPS25Q9BRG1 176 aa8.62□□□□□ -1.03
LSM1-205ENST00000523511 C9JAW5 83 aa8.61□□□□□ -1.03
LSM1-205ENST00000523511 LYRM7Q5U5X0 104 aa8.61□□□□□ -1.03
LSM1-205ENST00000523511 COX6B2Q6YFQ2 88 aa8.61□□□□□ -1.03
LSM1-205ENST00000523511 JMJD7-PLA2G4BH0Y9G9 81 aa8.59□□□□□ -1.03
LSM1-205ENST00000523511 C20orf166-AS1Q96NR2 134 aa8.59□□□□□ -1.03
LSM1-205ENST00000523511 A8MUU9 505 aa8.57□□□□□ -1.04
LSM1-205ENST00000523511 DSCR10P59022 87 aa8.57□□□□□ -1.04
LSM1-205ENST00000523511 LCE2CQ5TA81 110 aa8.56□□□□□ -1.04
LSM1-205ENST00000523511 KRTAP9-2Q9BYQ4 174 aa8.56□□□□□ -1.04
LSM1-205ENST00000523511 LINC00472Q9H8W2 130 aa8.56□□□□□ -1.04
LSM1-205ENST00000523511 TRBV20-1A0A075B6N2 111 aa8.55□□□□□ -1.04
LSM1-205ENST00000523511 PDE6GP18545 87 aa8.55□□□□□ -1.04
LSM1-205ENST00000523511 A0A1B0GW54 56 aa8.54□□□□□ -1.04
LSM1-205ENST00000523511 J3KT08 172 aa8.54□□□□□ -1.04
LSM1-205ENST00000523511 DEFB116Q30KQ4 102 aa8.53□□□□□ -1.04
LSM1-205ENST00000523511 KRTAP19-2Q3LHN2 52 aa8.53□□□□□ -1.04
LSM1-205ENST00000523511 M0R2T5 61 aa8.52□□□□□ -1.05
LSM1-205ENST00000523511 IGHV6-1A0A0B4J1U7 121 aa8.51□□□□□ -1.05
LSM1-205ENST00000523511 MT1HP80294 61 aa8.51□□□□□ -1.05
LSM1-205ENST00000523511 BATFQ16520 125 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms