RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 KRTAP10-8P60410 259 aa5.93□□□□□ -1.46
NUP54-203ENST00000504173 DEFB105AQ8NG35 78 aa5.93□□□□□ -1.46
NUP54-203ENST00000504173 TYMSOSQ8TAI1 123 aa5.92□□□□□ -1.46
NUP54-203ENST00000504173 FAM218AQ96MZ4 157 aa5.92□□□□□ -1.46
NUP54-203ENST00000504173 LPAP08519 4548 aa5.92□□□□□ -1.46
NUP54-203ENST00000504173 PCP4L1A6NKN8 68 aa5.91□□□□□ -1.46
NUP54-203ENST00000504173 SCGB1C2P0DMR2 95 aa5.91□□□□□ -1.46
NUP54-203ENST00000504173 SPRR1BP22528 89 aa5.91□□□□□ -1.46
NUP54-203ENST00000504173 KRTAP13-2Q52LG2 175 aa5.91□□□□□ -1.46
NUP54-203ENST00000504173 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.91□□□□□ -1.46
NUP54-203ENST00000504173 Q6ZQY7 126 aa5.91□□□□□ -1.46
NUP54-203ENST00000504173 C3orf22Q8N5N4 141 aa5.91□□□□□ -1.46
NUP54-203ENST00000504173 IGLV5-48A0A075B6I7 105 aa5.9□□□□□ -1.46
NUP54-203ENST00000504173 IGLV9-49A0A0B4J1Y8 123 aa5.9□□□□□ -1.46
NUP54-203ENST00000504173 TEX49A0A1B0GTD5 131 aa5.9□□□□□ -1.46
NUP54-203ENST00000504173 A0A1B0GX51 115 aa5.9□□□□□ -1.46
NUP54-203ENST00000504173 CLEC2BQ92478 149 aa5.9□□□□□ -1.46
NUP54-203ENST00000504173 NAA38Q9BRA0 125 aaKnown RBP5.9□□□□□ -1.46
NUP54-203ENST00000504173 LINC01547P58512 204 aaPredicted RBP5.89□□□□□ -1.47
NUP54-203ENST00000504173 SNHG12Q9BXW3 62 aa5.89□□□□□ -1.47
NUP54-203ENST00000504173 LAMTOR3Q9UHA4 124 aa5.89□□□□□ -1.47
NUP54-203ENST00000504173 DNAL4O96015 105 aa5.88□□□□□ -1.47
NUP54-203ENST00000504173 MOBPQ13875 183 aa5.88□□□□□ -1.47
NUP54-203ENST00000504173 C9orf153Q5TBE3 101 aa5.88□□□□□ -1.47
NUP54-203ENST00000504173 Q8N377 158 aa5.88□□□□□ -1.47
NUP54-203ENST00000504173 OCIAD2Q56VL3 154 aa5.87□□□□□ -1.47
NUP54-203ENST00000504173 H3BUT2 72 aa5.86□□□□□ -1.47
NUP54-203ENST00000504173 LYRM7Q5U5X0 104 aa5.86□□□□□ -1.47
NUP54-203ENST00000504173 SMIM29Q86T20 159 aa5.86□□□□□ -1.47
NUP54-203ENST00000504173 Q8NBF4 154 aa5.86□□□□□ -1.47
NUP54-203ENST00000504173 PPDPFLQ8WWR9 84 aa5.86□□□□□ -1.47
NUP54-203ENST00000504173 C9orf118A6NHY6 69 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 F8WEM9 126 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 LST1O00453 97 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 TAX1BP3O14907 124 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 GHRHP01286 108 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 TRACP01848 142 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 COL5A1-AS1Q5SY13 56 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 SSBP3-AS1Q7Z2R9 100 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 LINC00304Q8N9R0 145 aa5.85□□□□□ -1.47
NUP54-203ENST00000504173 ORMDL1Q9P0S3 153 aa5.84□□□□□ -1.47
NUP54-203ENST00000504173 TCL1BO95988 128 aa5.83□□□□□ -1.48
NUP54-203ENST00000504173 FABP2P12104 132 aa5.83□□□□□ -1.48
NUP54-203ENST00000504173 ATXN8Q156A1 80 aa5.83□□□□□ -1.48
NUP54-203ENST00000504173 H3BQ85 93 aa5.82□□□□□ -1.48
NUP54-203ENST00000504173 A0A1W2PPM0 123 aa5.81□□□□□ -1.48
NUP54-203ENST00000504173 SPAG11AQ6PDA7 123 aa5.81□□□□□ -1.48
NUP54-203ENST00000504173 TRBV20-1A0A075B6N2 111 aa5.8□□□□□ -1.48
NUP54-203ENST00000504173 NDUFV3P56181 108 aaKnown RBP5.8□□□□□ -1.48
NUP54-203ENST00000504173 TMEM256-PLSCR3K7ERE1 68 aa5.79□□□□□ -1.48
NUP54-203ENST00000504173 IGLV8-61A0A075B6I0 122 aa5.78□□□□□ -1.48
NUP54-203ENST00000504173 KRTAP9-7A8MTY7 169 aa5.78□□□□□ -1.48
NUP54-203ENST00000504173 SPINK1P00995 79 aa5.78□□□□□ -1.48
NUP54-203ENST00000504173 Q6JHZ5 121 aa5.78□□□□□ -1.48
NUP54-203ENST00000504173 A0A0G2JQZ4 141 aa5.77□□□□□ -1.49
NUP54-203ENST00000504173 H3BMG7 143 aa5.77□□□□□ -1.49
NUP54-203ENST00000504173 BAALC-AS2P0C853 105 aa5.77□□□□□ -1.49
NUP54-203ENST00000504173 HRCT1Q6UXD1 115 aa5.77□□□□□ -1.49
NUP54-203ENST00000504173 SPCS1Q9Y6A9 102 aa5.77□□□□□ -1.49
NUP54-203ENST00000504173 A0A1B0GV72 72 aa5.76□□□□□ -1.49
NUP54-203ENST00000504173 C9JAW5 83 aa5.76□□□□□ -1.49
NUP54-203ENST00000504173 UBE2V1Q13404 147 aa5.76□□□□□ -1.49
NUP54-203ENST00000504173 IGFL1Q6UW32 110 aa5.76□□□□□ -1.49
NUP54-203ENST00000504173 CD164Q04900 197 aa5.75□□□□□ -1.49
NUP54-203ENST00000504173 ANKRD29Q8N6D5 301 aa5.75□□□□□ -1.49
NUP54-203ENST00000504173 RPS29P62273 56 aaKnown RBP5.74□□□□□ -1.49
NUP54-203ENST00000504173 LIMD2Q9BT23 127 aa5.73□□□□□ -1.49
NUP54-203ENST00000504173 K7EP34 96 aa5.72□□□□□ -1.49
NUP54-203ENST00000504173 MTURNQ8N3F0 131 aa5.72□□□□□ -1.49
NUP54-203ENST00000504173 RETNLBQ9BQ08 111 aa5.72□□□□□ -1.49
NUP54-203ENST00000504173 H3BT86 120 aa5.71□□□□□ -1.5
NUP54-203ENST00000504173 PRR4Q16378 134 aa5.71□□□□□ -1.5
NUP54-203ENST00000504173 TRBV7-7A0A0K0K1E9 115 aa5.7□□□□□ -1.5
NUP54-203ENST00000504173 RBM3P98179 157 aaKnown RBP5.7□□□□□ -1.5
NUP54-203ENST00000504173 XP32Q5T750 250 aa5.7□□□□□ -1.5
NUP54-203ENST00000504173 GTF2H5Q6ZYL4 71 aa5.7□□□□□ -1.5
NUP54-203ENST00000504173 JMJD7-PLA2G4BH0Y9G9 81 aa5.69□□□□□ -1.5
NUP54-203ENST00000504173 TEN1Q86WV5 123 aa5.69□□□□□ -1.5
NUP54-203ENST00000504173 DSCR8Q96T75 97 aa5.69□□□□□ -1.5
NUP54-203ENST00000504173 Q6Q795 121 aa5.68□□□□□ -1.5
NUP54-203ENST00000504173 TRBV7-4A0A0J9YYF1 115 aa5.67□□□□□ -1.5
NUP54-203ENST00000504173 A0A1W2PNM2 257 aa5.67□□□□□ -1.5
NUP54-203ENST00000504173 CCKP06307 115 aa5.67□□□□□ -1.5
NUP54-203ENST00000504173 Q5XG85 94 aa5.67□□□□□ -1.5
NUP54-203ENST00000504173 FP248Q71RG6 208 aaPredicted RBP5.66□□□□□ -1.5
NUP54-203ENST00000504173 VPS25Q9BRG1 176 aa5.66□□□□□ -1.5
NUP54-203ENST00000504173 IGLV7-46A0A075B6I9 117 aa5.65□□□□□ -1.5
NUP54-203ENST00000504173 A0A087WSZ3 146 aa5.65□□□□□ -1.5
NUP54-203ENST00000504173 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.65□□□□□ -1.5
NUP54-203ENST00000504173 C14orf132Q9NPU4 83 aa5.65□□□□□ -1.5
NUP54-203ENST00000504173 SS18L2Q9UHA2 77 aa5.65□□□□□ -1.5
NUP54-203ENST00000504173 PRO0461Q9UI25 63 aa5.65□□□□□ -1.5
NUP54-203ENST00000504173 OBSCN-AS1Q96MR7 158 aa5.64□□□□□ -1.51
NUP54-203ENST00000504173 LOC110117498A0A087WWA1 95 aa5.63□□□□□ -1.51
NUP54-203ENST00000504173 PDE6GP18545 87 aa5.63□□□□□ -1.51
NUP54-203ENST00000504173 ASB16-AS1Q495Z4 193 aa5.63□□□□□ -1.51
NUP54-203ENST00000504173 Q6ZQT0 140 aa5.63□□□□□ -1.51
NUP54-203ENST00000504173 C1orf195Q5TG92 126 aa5.62□□□□□ -1.51
NUP54-203ENST00000504173 F8W1H4 67 aa5.61□□□□□ -1.51
NUP54-203ENST00000504173 C21orf62-AS1Q17RA5 79 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms