RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PRLHP81277 87 aa7.11□□□□□ -1.27
VPS52-213ENST00000461743 FAM229BQ4G0N7 80 aa7.1□□□□□ -1.27
VPS52-213ENST00000461743 S100A7L2Q5SY68 101 aa7.1□□□□□ -1.27
VPS52-213ENST00000461743 LINC00643Q86TS7 51 aa7.1□□□□□ -1.27
VPS52-213ENST00000461743 C3orf22Q8N5N4 141 aa7.1□□□□□ -1.27
VPS52-213ENST00000461743 ETDCA0A1B0GVM5 59 aa7.09□□□□□ -1.27
VPS52-213ENST00000461743 A0A1B0GX51 115 aa7.09□□□□□ -1.27
VPS52-213ENST00000461743 KRTAP4-16G5E9R7 235 aaPredicted RBP7.09□□□□□ -1.27
VPS52-213ENST00000461743 UQCRQO14949 82 aa7.09□□□□□ -1.27
VPS52-213ENST00000461743 NPC2P61916 151 aa7.09□□□□□ -1.27
VPS52-213ENST00000461743 HMCN2Q8NDA2 5059 aa7.09□□□□□ -1.27
VPS52-213ENST00000461743 TRAV23DV6A0A075B6W5 121 aa7.08□□□□□ -1.28
VPS52-213ENST00000461743 FAM236AA0A1B0GUQ0 79 aa7.08□□□□□ -1.28
VPS52-213ENST00000461743 FAM236BA0A1B0GV22 79 aa7.08□□□□□ -1.28
VPS52-213ENST00000461743 C9orf153Q5TBE3 101 aa7.08□□□□□ -1.28
VPS52-213ENST00000461743 PRR26Q8N8Z3 221 aa7.08□□□□□ -1.28
VPS52-213ENST00000461743 ZNF706Q9Y5V0 76 aaPredicted RBP7.08□□□□□ -1.28
VPS52-213ENST00000461743 CLEC2BQ92478 149 aa7.07□□□□□ -1.28
VPS52-213ENST00000461743 TRACP01848 142 aa7.06□□□□□ -1.28
VPS52-213ENST00000461743 CRYGAP11844 174 aa7.06□□□□□ -1.28
VPS52-213ENST00000461743 HIGD2AQ9BW72 106 aa7.06□□□□□ -1.28
VPS52-213ENST00000461743 J3KT08 172 aa7.05□□□□□ -1.28
VPS52-213ENST00000461743 Q6ZRX8 168 aa7.05□□□□□ -1.28
VPS52-213ENST00000461743 ZNF73O43830 326 aaPredicted RBP7.04□□□□□ -1.28
VPS52-213ENST00000461743 C5orf47Q569G3 176 aa7.04□□□□□ -1.28
VPS52-213ENST00000461743 A0A087X002 238 aa7.03□□□□□ -1.28
VPS52-213ENST00000461743 ATOX1O00244 68 aa7.03□□□□□ -1.28
VPS52-213ENST00000461743 COX7CP15954 63 aa7.03□□□□□ -1.28
VPS52-213ENST00000461743 HIST1H4AP62805 103 aaKnown RBP7.03□□□□□ -1.28
VPS52-213ENST00000461743 RPS28P62857 69 aaKnown RBP7.02□□□□□ -1.29
VPS52-213ENST00000461743 OR13C6PQ8NH95 151 aa7.02□□□□□ -1.29
VPS52-213ENST00000461743 SMCR5Q8TEV8 140 aa7.02□□□□□ -1.29
VPS52-213ENST00000461743 SPRR4Q96PI1 79 aa7.02□□□□□ -1.29
VPS52-213ENST00000461743 TYMSOSQ8TAI1 123 aa7.01□□□□□ -1.29
VPS52-213ENST00000461743 TRAV13-2A0A0B4J235 113 aa7□□□□□ -1.29
VPS52-213ENST00000461743 TRBV7-6A0A0J9YX20 115 aa6.99□□□□□ -1.29
VPS52-213ENST00000461743 KRTAP13-2Q52LG2 175 aa6.99□□□□□ -1.29
VPS52-213ENST00000461743 LINC00483Q53H64 154 aa6.99□□□□□ -1.29
VPS52-213ENST00000461743 Q9BRP9 147 aa6.99□□□□□ -1.29
VPS52-213ENST00000461743 Q6JHZ5 121 aa6.98□□□□□ -1.29
VPS52-213ENST00000461743 GAGE2AQ6NT46 116 aa6.98□□□□□ -1.29
VPS52-213ENST00000461743 DHRS4-AS1Q9P1J3 65 aa6.98□□□□□ -1.29
VPS52-213ENST00000461743 BAALC-AS2P0C853 105 aa6.97□□□□□ -1.29
VPS52-213ENST00000461743 ELOF1P60002 83 aaKnown RBP6.97□□□□□ -1.29
VPS52-213ENST00000461743 TMEM258P61165 79 aa6.97□□□□□ -1.29
VPS52-213ENST00000461743 ANAPC11Q9NYG5 84 aa6.97□□□□□ -1.29
VPS52-213ENST00000461743 COX7BP24311 80 aa6.95□□□□□ -1.3
VPS52-213ENST00000461743 C6orf99Q4VX62 202 aa6.95□□□□□ -1.3
VPS52-213ENST00000461743 LINC00304Q8N9R0 145 aa6.95□□□□□ -1.3
VPS52-213ENST00000461743 ERC2-IT1O76042 136 aa6.94□□□□□ -1.3
VPS52-213ENST00000461743 DNAL4O96015 105 aa6.93□□□□□ -1.3
VPS52-213ENST00000461743 SERP2Q8N6R1 65 aa6.93□□□□□ -1.3
VPS52-213ENST00000461743 SPAG11AQ6PDA7 123 aa6.92□□□□□ -1.3
VPS52-213ENST00000461743 OBSCN-AS1Q96MR7 158 aa6.92□□□□□ -1.3
VPS52-213ENST00000461743 LRP2P98164 4655 aa6.91□□□□□ -1.3
VPS52-213ENST00000461743 SPRR1BP22528 89 aa6.91□□□□□ -1.3
VPS52-213ENST00000461743 ATP5EP2Q5VTU8 51 aa6.9□□□□□ -1.3
VPS52-213ENST00000461743 SMIM11BQ8TCY0 68 aa6.9□□□□□ -1.3
VPS52-213ENST00000461743 FAM218AQ96MZ4 157 aa6.9□□□□□ -1.3
VPS52-213ENST00000461743 hADV29S1A0JD25 119 aa6.89□□□□□ -1.31
VPS52-213ENST00000461743 H0YGX0 51 aa6.89□□□□□ -1.31
VPS52-213ENST00000461743 SSBP3-AS1Q7Z2R9 100 aa6.88□□□□□ -1.31
VPS52-213ENST00000461743 RPS29P62273 56 aaKnown RBP6.87□□□□□ -1.31
VPS52-213ENST00000461743 MOBPQ13875 183 aa6.87□□□□□ -1.31
VPS52-213ENST00000461743 ST20-AS1Q8NBB2 130 aa6.87□□□□□ -1.31
VPS52-213ENST00000461743 Q8NBF4 154 aa6.87□□□□□ -1.31
VPS52-213ENST00000461743 IGLV9-49A0A0B4J1Y8 123 aa6.86□□□□□ -1.31
VPS52-213ENST00000461743 C4orf48Q5BLP8 95 aa6.86□□□□□ -1.31
VPS52-213ENST00000461743 IGLV5-48A0A075B6I7 105 aa6.85□□□□□ -1.31
VPS52-213ENST00000461743 SPINK1P00995 79 aa6.85□□□□□ -1.31
VPS52-213ENST00000461743 LAMTOR3Q9UHA4 124 aa6.85□□□□□ -1.31
VPS52-213ENST00000461743 UBR4Q5T4S7 5183 aa6.83□□□□□ -1.32
VPS52-213ENST00000461743 IGKV3D-7A0A0C4DH55 119 aa6.83□□□□□ -1.32
VPS52-213ENST00000461743 PRR4Q16378 134 aa6.83□□□□□ -1.32
VPS52-213ENST00000461743 C14orf132Q9NPU4 83 aa6.83□□□□□ -1.32
VPS52-213ENST00000461743 LINC00846Q9NV44 126 aa6.83□□□□□ -1.32
VPS52-213ENST00000461743 LPAP08519 4548 aa6.82□□□□□ -1.32
VPS52-213ENST00000461743 LINC00575Q6W349 94 aa6.82□□□□□ -1.32
VPS52-213ENST00000461743 CCKP06307 115 aa6.81□□□□□ -1.32
VPS52-213ENST00000461743 LINC01547P58512 204 aaPredicted RBP6.81□□□□□ -1.32
VPS52-213ENST00000461743 CYSTM1Q9H1C7 97 aa6.81□□□□□ -1.32
VPS52-213ENST00000461743 ORMDL1Q9P0S3 153 aa6.81□□□□□ -1.32
VPS52-213ENST00000461743 JMJD7-PLA2G4BH0Y9G9 81 aa6.8□□□□□ -1.32
VPS52-213ENST00000461743 FP248Q71RG6 208 aaPredicted RBP6.8□□□□□ -1.32
VPS52-213ENST00000461743 Q5XG85 94 aa6.79□□□□□ -1.32
VPS52-213ENST00000461743 DSCR8Q96T75 97 aa6.79□□□□□ -1.32
VPS52-213ENST00000461743 GHRHP01286 108 aa6.78□□□□□ -1.32
VPS52-213ENST00000461743 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.78□□□□□ -1.32
VPS52-213ENST00000461743 DEFB105AQ8NG35 78 aa6.78□□□□□ -1.32
VPS52-213ENST00000461743 A0A087WVE0 104 aa6.77□□□□□ -1.33
VPS52-213ENST00000461743 FAM236DA0A1B0GTK5 79 aa6.77□□□□□ -1.33
VPS52-213ENST00000461743 FAM236CP0DP71 79 aa6.77□□□□□ -1.33
VPS52-213ENST00000461743 CD164Q04900 197 aa6.77□□□□□ -1.33
VPS52-213ENST00000461743 Q6ZQY7 126 aa6.77□□□□□ -1.33
VPS52-213ENST00000461743 SMIM29Q86T20 159 aa6.77□□□□□ -1.33
VPS52-213ENST00000461743 TPRXLQ17RH7 258 aa6.76□□□□□ -1.33
VPS52-213ENST00000461743 Q8N377 158 aa6.76□□□□□ -1.33
VPS52-213ENST00000461743 RETNLBQ9BQ08 111 aa6.76□□□□□ -1.33
VPS52-213ENST00000461743 LIMD2Q9BT23 127 aa6.76□□□□□ -1.33
VPS52-213ENST00000461743 SERP1Q9Y6X1 66 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms