RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 RBM12B-AS1Q9P1G2 102 aa4.12□□□□□ -1.75
VPS13D-202ENST00000460333 CYSTM1Q9H1C7 97 aa4.11□□□□□ -1.75
VPS13D-202ENST00000460333 LINC01556Q5JQF7 62 aa4.11□□□□□ -1.75
VPS13D-202ENST00000460333 FAM104AQ969W3 186 aa4.11□□□□□ -1.75
VPS13D-202ENST00000460333 KCNQ1DNQ9H478 68 aa4.11□□□□□ -1.75
VPS13D-202ENST00000460333 NOTCH1P46531 2555 aa4.11□□□□□ -1.75
VPS13D-202ENST00000460333 J3QL48 77 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 TENM4Q6N022 2769 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 PDZD2O15018 2839 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 UQCR11O14957 56 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 OXTP01178 125 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 EPM2AB3EWF7 344 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 Q75L30 129 aa4.1□□□□□ -1.75
VPS13D-202ENST00000460333 ASH1LQ9NR48 2969 aaKnown RBP4.1□□□□□ -1.75
VPS13D-202ENST00000460333 Q6ZRP5 223 aa4.09□□□□□ -1.76
VPS13D-202ENST00000460333 MXRA5Q9NR99 2828 aa4.09□□□□□ -1.76
VPS13D-202ENST00000460333 PRR34Q9NV39 138 aa4.08□□□□□ -1.76
VPS13D-202ENST00000460333 PRLHP81277 87 aa4.08□□□□□ -1.76
VPS13D-202ENST00000460333 NBDYA0A0U1RRE5 68 aa4.08□□□□□ -1.76
VPS13D-202ENST00000460333 NSD1Q96L73 2696 aaPredicted RBP4.07□□□□□ -1.76
VPS13D-202ENST00000460333 PLA2G1BP04054 148 aaKnown RBP4.07□□□□□ -1.76
VPS13D-202ENST00000460333 HIVEP1P15822 2718 aa4.07□□□□□ -1.76
VPS13D-202ENST00000460333 MIR22HGQ0VDD5 57 aa4.06□□□□□ -1.76
VPS13D-202ENST00000460333 Q8N377 158 aa4.06□□□□□ -1.76
VPS13D-202ENST00000460333 ST20-AS1Q8NBB2 130 aa4.06□□□□□ -1.76
VPS13D-202ENST00000460333 IGLV5-48A0A075B6I7 105 aa4.06□□□□□ -1.76
VPS13D-202ENST00000460333 PLA2G2DQ9UNK4 145 aa4.06□□□□□ -1.76
VPS13D-202ENST00000460333 DNAH10OSP0CZ25 163 aa4.06□□□□□ -1.76
VPS13D-202ENST00000460333 FAM229BQ4G0N7 80 aa4.05□□□□□ -1.76
VPS13D-202ENST00000460333 MRPL34Q9BQ48 92 aaKnown RBP4.05□□□□□ -1.76
VPS13D-202ENST00000460333 IGLV1-50A0A075B6I6 118 aa4.05□□□□□ -1.76
VPS13D-202ENST00000460333 RPL37AP61513 92 aaKnown RBP4.05□□□□□ -1.76
VPS13D-202ENST00000460333 NBEAL1Q6ZS30 2694 aa4.04□□□□□ -1.76
VPS13D-202ENST00000460333 IGFL1Q6UW32 110 aa4.04□□□□□ -1.76
VPS13D-202ENST00000460333 LINC00588Q9Y4M8 146 aa4.04□□□□□ -1.76
VPS13D-202ENST00000460333 A0A1W2PNM2 257 aa4.03□□□□□ -1.76
VPS13D-202ENST00000460333 CIRBP-AS1Q8TBR5 109 aa4.03□□□□□ -1.76
VPS13D-202ENST00000460333 LINC01558Q9Y6Z2 57 aa4.03□□□□□ -1.76
VPS13D-202ENST00000460333 SPINK1P00995 79 aa4.03□□□□□ -1.76
VPS13D-202ENST00000460333 Q8N9P0 234 aaPredicted RBP4.03□□□□□ -1.76
VPS13D-202ENST00000460333 IGLV7-46A0A075B6I9 117 aa4.02□□□□□ -1.77
VPS13D-202ENST00000460333 C8orf17Q9NRJ1 99 aa4.02□□□□□ -1.77
VPS13D-202ENST00000460333 TLX1NBP0CAT3 122 aa4.02□□□□□ -1.77
VPS13D-202ENST00000460333 LINC01554Q52M75 96 aa4.02□□□□□ -1.77
VPS13D-202ENST00000460333 Q5VV11 94 aa4.02□□□□□ -1.77
VPS13D-202ENST00000460333 SPRR4Q96PI1 79 aa4.02□□□□□ -1.77
VPS13D-202ENST00000460333 NF1P21359 2839 aa4.01□□□□□ -1.77
VPS13D-202ENST00000460333 SPINT4Q6UDR6 99 aa4□□□□□ -1.77
VPS13D-202ENST00000460333 IGKV2D-30A0A075B6S6 120 aa4□□□□□ -1.77
VPS13D-202ENST00000460333 H3BS24 57 aa4□□□□□ -1.77
VPS13D-202ENST00000460333 IGKV2-30P06310 120 aa4□□□□□ -1.77
VPS13D-202ENST00000460333 CELSR1Q9NYQ6 3014 aa4□□□□□ -1.77
VPS13D-202ENST00000460333 DSCR10P59022 87 aa3.99□□□□□ -1.77
VPS13D-202ENST00000460333 ASB16-AS1Q495Z4 193 aa3.99□□□□□ -1.77
VPS13D-202ENST00000460333 A0A1B0GVX0 72 aa3.99□□□□□ -1.77
VPS13D-202ENST00000460333 RTL8CO15255 209 aa3.99□□□□□ -1.77
VPS13D-202ENST00000460333 PHF5AQ7RTV0 110 aaKnown RBP3.99□□□□□ -1.77
VPS13D-202ENST00000460333 IGLV5-37A0A075B6J1 123 aa3.99□□□□□ -1.77
VPS13D-202ENST00000460333 LINC00313P59037 77 aa3.98□□□□□ -1.77
VPS13D-202ENST00000460333 CASC10Q5T4H9 136 aa3.98□□□□□ -1.77
VPS13D-202ENST00000460333 C15orf56Q8N910 161 aa3.98□□□□□ -1.77
VPS13D-202ENST00000460333 OTOGQ6ZRI0 2925 aa3.97□□□□□ -1.77
VPS13D-202ENST00000460333 ANK3Q12955 4377 aaKnown RBP3.96□□□□□ -1.77
VPS13D-202ENST00000460333 APLNQ9ULZ1 77 aa3.96□□□□□ -1.77
VPS13D-202ENST00000460333 CSMD1Q96PZ7 3565 aa3.96□□□□□ -1.78
VPS13D-202ENST00000460333 FAM168BA1KXE4 195 aa3.94□□□□□ -1.78
VPS13D-202ENST00000460333 SSBP3-AS1Q7Z2R9 100 aa3.94□□□□□ -1.78
VPS13D-202ENST00000460333 IGLV8-61A0A075B6I0 122 aa3.93□□□□□ -1.78
VPS13D-202ENST00000460333 SVEP1Q4LDE5 3571 aa3.93□□□□□ -1.78
VPS13D-202ENST00000460333 CSMD2Q7Z408 3487 aa3.93□□□□□ -1.78
VPS13D-202ENST00000460333 KRTAP26-1Q6PEX3 210 aa3.93□□□□□ -1.78
VPS13D-202ENST00000460333 NBEAL2Q6ZNJ1 2754 aa3.93□□□□□ -1.78
VPS13D-202ENST00000460333 LCE6AA0A183 80 aa3.92□□□□□ -1.78
VPS13D-202ENST00000460333 A0A087WTM6 91 aa3.91□□□□□ -1.78
VPS13D-202ENST00000460333 CNBPP62633 177 aaKnown RBP3.91□□□□□ -1.78
VPS13D-202ENST00000460333 NBPF19A0A087WUL8 3843 aa3.91□□□□□ -1.78
VPS13D-202ENST00000460333 NIPBLQ6KC79 2804 aaeCLIP3.91□□□□□ -1.78
VPS13D-202ENST00000460333 ZCCHC13Q8WW36 166 aaKnown RBP3.91□□□□□ -1.78
VPS13D-202ENST00000460333 VPS13CQ709C8 3753 aa3.9□□□□□ -1.78
VPS13D-202ENST00000460333 C9orf163Q8N9P6 203 aa3.9□□□□□ -1.78
VPS13D-202ENST00000460333 CRIPTQ9P021 101 aa3.9□□□□□ -1.79
VPS13D-202ENST00000460333 PRR26Q8N8Z3 221 aa3.89□□□□□ -1.79
VPS13D-202ENST00000460333 PRAC1Q96KF2 57 aa3.89□□□□□ -1.79
VPS13D-202ENST00000460333 SMR3BP02814 79 aaPredicted RBP3.89□□□□□ -1.79
VPS13D-202ENST00000460333 MMP24-AS1A0A0U1RRL7 71 aa3.88□□□□□ -1.79
VPS13D-202ENST00000460333 A6NN06 94 aa3.88□□□□□ -1.79
VPS13D-202ENST00000460333 HRES1P13985 223 aa3.88□□□□□ -1.79
VPS13D-202ENST00000460333 SPRR1AP35321 89 aa3.88□□□□□ -1.79
VPS13D-202ENST00000460333 TYMSOSQ8TAI1 123 aa3.88□□□□□ -1.79
VPS13D-202ENST00000460333 SPINK7P58062 85 aa3.88□□□□□ -1.79
VPS13D-202ENST00000460333 Q8NDZ9 215 aa3.87□□□□□ -1.79
VPS13D-202ENST00000460333 A0A0G2JQZ4 141 aa3.87□□□□□ -1.79
VPS13D-202ENST00000460333 A0A1W2PNN7 141 aa3.87□□□□□ -1.79
VPS13D-202ENST00000460333 AKAP9Q99996 3911 aa3.87□□□□□ -1.79
VPS13D-202ENST00000460333 STAB2Q8WWQ8 2551 aa3.86□□□□□ -1.79
VPS13D-202ENST00000460333 SPACA4Q8TDM5 124 aa3.86□□□□□ -1.79
VPS13D-202ENST00000460333 TENM1Q9UKZ4 2725 aa3.86□□□□□ -1.79
VPS13D-202ENST00000460333 A0A087X002 238 aa3.85□□□□□ -1.79
VPS13D-202ENST00000460333 TNP2Q05952 138 aa3.85□□□□□ -1.79
VPS13D-202ENST00000460333 CSAG1Q6PB30 78 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms