RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ELOF1P60002 83 aaKnown RBP2.26□□□□□ -2.05
VPS29-202ENST00000447578 C9orf153Q5TBE3 101 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 ATP5EP2Q5VTU8 51 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 Q6ZQT0 140 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 SCXQ7RTU7 201 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 UBL5Q9BZL1 73 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 COL12A1Q99715 3063 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 CELSR1Q9NYQ6 3014 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 CFAP46Q8IYW2 2715 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 K7EIL1 84 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 UQCRQO14949 82 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 COX7CP15954 63 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 PDE6GP18545 87 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 KRTAP25-1Q3LHN0 102 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 DEFB105AQ8NG35 78 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 TM2D3Q9BRN9 247 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 R4GN34 69 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 HMCN1Q96RW7 5635 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 USP9YO00507 2555 aaPredicted RBP2.25□□□□□ -2.05
VPS29-202ENST00000447578 HIVEP2P31629 2446 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 CREBBPQ92793 2442 aa2.25□□□□□ -2.05
VPS29-202ENST00000447578 PDZD2O15018 2839 aa2.24□□□□□ -2.05
VPS29-202ENST00000447578 HAMPP81172 84 aa2.24□□□□□ -2.05
VPS29-202ENST00000447578 UPK3BQ9BT76 320 aa2.24□□□□□ -2.05
VPS29-202ENST00000447578 WNK1Q9H4A3 2382 aa2.24□□□□□ -2.05
VPS29-202ENST00000447578 ITPR3Q14573 2671 aa2.24□□□□□ -2.05
VPS29-202ENST00000447578 SONP18583 2426 aaKnown RBP2.23□□□□□ -2.05
VPS29-202ENST00000447578 TRBV7-4A0A0J9YYF1 115 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 A0A1B0GU33 70 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 PSCAO43653 123 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 KRTAP10-10P60014 251 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 PMAIP1Q13794 54 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 UBE2DNLQ8IWF7 75 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 SERP2Q8N6R1 65 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 KCNQ1DNQ9H478 68 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 ZFYVE26Q68DK2 2539 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 VPS13CQ709C8 3753 aa2.23□□□□□ -2.05
VPS29-202ENST00000447578 UTP20O75691 2785 aaKnown RBP2.22□□□□□ -2.05
VPS29-202ENST00000447578 FN1P02751 2386 aaKnown RBP2.22□□□□□ -2.05
VPS29-202ENST00000447578 LOC107984640A0A0U1RRK4 108 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 ETDCA0A1B0GVM5 59 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 CRYGAP11844 174 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 HRES1P13985 223 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 KRTAP21-2Q3LI59 83 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 HIGD2AQ9BW72 106 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 ASH1LQ9NR48 2969 aaKnown RBP2.22□□□□□ -2.05
VPS29-202ENST00000447578 ABCA12Q86UK0 2595 aa2.22□□□□□ -2.05
VPS29-202ENST00000447578 SPRR1AP35321 89 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 UBE2BP63146 152 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 Q6ZRX8 168 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 SMIM20Q8N5G0 67 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 Q9BRP9 147 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 CYSTM1Q9H1C7 97 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 PKIGQ9Y2B9 76 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 MYO18BQ8IUG5 2567 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 APCP25054 2843 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 LRRK2Q5S007 2527 aa2.21□□□□□ -2.06
VPS29-202ENST00000447578 FLNAP21333 2647 aaKnown RBP2.21□□□□□ -2.06
VPS29-202ENST00000447578 FLNCQ14315 2725 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 ZNF469Q96JG9 3925 aaPredicted RBP2.2□□□□□ -2.06
VPS29-202ENST00000447578 TEX15Q9BXT5 2789 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 A0A096LNI7 61 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 IGKV2-24A0A0C4DH68 120 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 C3orf84H3BNL1 204 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 ERC2-IT1O76042 136 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 NREPQ16612 68 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 APLNQ9ULZ1 77 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 CUBNO60494 3623 aa2.2□□□□□ -2.06
VPS29-202ENST00000447578 CCDC168Q8NDH2 2452 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 ACANP16112 2415 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 IGLV5-48A0A075B6I7 105 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 TRAV7A0A075B6U4 112 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 A0A1W2PNM2 257 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 A0A1W2PNN7 141 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 BCE1O60756 84 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 FUSP35637 526 aaKnown RBP eCLIP2.19□□□□□ -2.06
VPS29-202ENST00000447578 TMEM258P61165 79 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 PRLHP81277 87 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 FAM229BQ4G0N7 80 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 C1orf137Q5JT78 98 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 C20orf197Q8N268 126 aa2.19□□□□□ -2.06
VPS29-202ENST00000447578 KMT2BQ9UMN6 2715 aaPredicted RBP2.19□□□□□ -2.06
VPS29-202ENST00000447578 FASNP49327 2511 aaKnown RBP2.19□□□□□ -2.06
VPS29-202ENST00000447578 ZANQ9Y493 2812 aa2.18□□□□□ -2.06
VPS29-202ENST00000447578 F8WEM9 126 aa2.18□□□□□ -2.06
VPS29-202ENST00000447578 IGKV4-1P06312 121 aa2.18□□□□□ -2.06
VPS29-202ENST00000447578 CNBPP62633 177 aaKnown RBP2.18□□□□□ -2.06
VPS29-202ENST00000447578 PHF5AQ7RTV0 110 aaKnown RBP2.18□□□□□ -2.06
VPS29-202ENST00000447578 CELSR2Q9HCU4 2923 aa2.18□□□□□ -2.06
VPS29-202ENST00000447578 EPG5Q9HCE0 2579 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 TLN2Q9Y4G6 2542 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 A0A0G2JQZ4 141 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 NUPR2A6NF83 97 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 A8MUN3 132 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 J3KT08 172 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 SNURFQ9Y675 71 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 C2CD3Q4AC94 2353 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 CRYBG3Q68DQ2 2970 aa2.17□□□□□ -2.06
VPS29-202ENST00000447578 MXRA5Q9NR99 2828 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 AKAP9Q99996 3911 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms