RNA–Protein interactions for RNA: ENST00000399256.4

APOB-202, Transcript of apolipoprotein B, humanhuman

TSL 1 (best) BASIC

Gene APOB, Length 3,128 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-202ENST00000399256 REG3GQ6UW15 175 aa8.87□□□□□ -0.99
APOB-202ENST00000399256 MDFIQ99750 246 aa8.87□□□□□ -0.99
APOB-202ENST00000399256 RPL37AP61513 92 aaKnown RBP8.87□□□□□ -0.99
APOB-202ENST00000399256 C11orf45Q8TAV5 145 aa8.86□□□□□ -0.99
APOB-202ENST00000399256 CYP4F30PQ9H0H9 118 aa8.86□□□□□ -0.99
APOB-202ENST00000399256 A0A087WSZ3 146 aa8.86□□□□□ -0.99
APOB-202ENST00000399256 PRLHP81277 87 aa8.85□□□□□ -0.99
APOB-202ENST00000399256 PRR15Q8IV56 129 aa8.85□□□□□ -0.99
APOB-202ENST00000399256 LINC00208Q96KT6 92 aa8.84□□□□□ -0.99
APOB-202ENST00000399256 MP68P56378 58 aa8.83□□□□□ -1
APOB-202ENST00000399256 NDUFB1O75438 58 aa8.82□□□□□ -1
APOB-202ENST00000399256 LINC00588Q9Y4M8 146 aa8.82□□□□□ -1
APOB-202ENST00000399256 A8MUN3 132 aa8.82□□□□□ -1
APOB-202ENST00000399256 B9D2Q9BPU9 175 aa8.79□□□□□ -1
APOB-202ENST00000399256 IGKV2-24A0A0C4DH68 120 aa8.78□□□□□ -1
APOB-202ENST00000399256 H0Y9P7 68 aa8.78□□□□□ -1
APOB-202ENST00000399256 SEC61GP60059 68 aa8.77□□□□□ -1.01
APOB-202ENST00000399256 NOTCH1P46531 2555 aa8.77□□□□□ -1.01
APOB-202ENST00000399256 A8MU10 97 aa8.76□□□□□ -1.01
APOB-202ENST00000399256 KRTAP29-1A8MX34 341 aaPredicted RBP8.76□□□□□ -1.01
APOB-202ENST00000399256 CASC2Q6XLA1 102 aa8.76□□□□□ -1.01
APOB-202ENST00000399256 UBE2AP49459 152 aa8.76□□□□□ -1.01
APOB-202ENST00000399256 A0A096LNI7 61 aa8.75□□□□□ -1.01
APOB-202ENST00000399256 PMAIP1Q13794 54 aa8.75□□□□□ -1.01
APOB-202ENST00000399256 NBEAL1Q6ZS30 2694 aa8.75□□□□□ -1.01
APOB-202ENST00000399256 IGLV8-61A0A075B6I0 122 aa8.74□□□□□ -1.01
APOB-202ENST00000399256 CNBPP62633 177 aaKnown RBP8.74□□□□□ -1.01
APOB-202ENST00000399256 Q5VV11 94 aa8.73□□□□□ -1.01
APOB-202ENST00000399256 MGAM2Q2M2H8 2515 aa8.73□□□□□ -1.01
APOB-202ENST00000399256 DNAH1Q9P2D7 4330 aa8.72□□□□□ -1.01
APOB-202ENST00000399256 SRRM2Q9UQ35 2752 aaKnown RBP8.71□□□□□ -1.01
APOB-202ENST00000399256 K7EIL1 84 aa8.69□□□□□ -1.02
APOB-202ENST00000399256 SPANXA2-OT1Q8N9U9 137 aa8.69□□□□□ -1.02
APOB-202ENST00000399256 Q8N9P0 234 aaPredicted RBP8.69□□□□□ -1.02
APOB-202ENST00000399256 KRTAP11-1Q8IUC1 163 aa8.69□□□□□ -1.02
APOB-202ENST00000399256 A8MWP4 228 aa8.68□□□□□ -1.02
APOB-202ENST00000399256 CHKB-CPT1BH3BT56 60 aa8.68□□□□□ -1.02
APOB-202ENST00000399256 DNHD1Q96M86 4753 aa8.68□□□□□ -1.02
APOB-202ENST00000399256 PRR15LQ9BU68 103 aa8.68□□□□□ -1.02
APOB-202ENST00000399256 C16orf90A8MZG2 172 aa8.67□□□□□ -1.02
APOB-202ENST00000399256 PHF5AQ7RTV0 110 aaKnown RBP8.67□□□□□ -1.02
APOB-202ENST00000399256 H0Y9J4 135 aa8.67□□□□□ -1.02
APOB-202ENST00000399256 H3BPC8 53 aa8.67□□□□□ -1.02
APOB-202ENST00000399256 LINC00472Q9H8W2 130 aa8.67□□□□□ -1.02
APOB-202ENST00000399256 CHTF8P0CG12 524 aa8.66□□□□□ -1.02
APOB-202ENST00000399256 C9orf163Q8N9P6 203 aa8.65□□□□□ -1.02
APOB-202ENST00000399256 LIMD2Q9BT23 127 aa8.64□□□□□ -1.03
APOB-202ENST00000399256 DNAH10Q8IVF4 4471 aa8.63□□□□□ -1.03
APOB-202ENST00000399256 HUWE1Q7Z6Z7 4374 aaKnown RBP8.63□□□□□ -1.03
APOB-202ENST00000399256 KRTAP1-5Q9BYS1 174 aa8.63□□□□□ -1.03
APOB-202ENST00000399256 MMP24-AS1A0A0U1RRL7 71 aa8.62□□□□□ -1.03
APOB-202ENST00000399256 COA5Q86WW8 74 aa8.62□□□□□ -1.03
APOB-202ENST00000399256 PCOTHQ58A44 107 aa8.61□□□□□ -1.03
APOB-202ENST00000399256 SPRR1BP22528 89 aa8.6□□□□□ -1.03
APOB-202ENST00000399256 KRTAP21-3Q3LHN1 58 aa8.6□□□□□ -1.03
APOB-202ENST00000399256 SPTSSBQ8NFR3 76 aa8.59□□□□□ -1.03
APOB-202ENST00000399256 DNAH9Q9NYC9 4486 aa8.59□□□□□ -1.03
APOB-202ENST00000399256 LYSTQ99698 3801 aa8.57□□□□□ -1.04
APOB-202ENST00000399256 IGLV7-46A0A075B6I9 117 aa8.56□□□□□ -1.04
APOB-202ENST00000399256 A6NED7 52 aa8.56□□□□□ -1.04
APOB-202ENST00000399256 LCA10Q71F78 164 aa8.56□□□□□ -1.04
APOB-202ENST00000399256 CSMD3Q7Z407 3707 aa8.55□□□□□ -1.04
APOB-202ENST00000399256 CD164Q04900 197 aa8.55□□□□□ -1.04
APOB-202ENST00000399256 Q75L30 129 aa8.54□□□□□ -1.04
APOB-202ENST00000399256 IGLV9-49A0A0B4J1Y8 123 aa8.53□□□□□ -1.04
APOB-202ENST00000399256 TENM2Q9NT68 2774 aa8.52□□□□□ -1.04
APOB-202ENST00000399256 LOC101927531A0A1B0GV80 90 aa8.51□□□□□ -1.05
APOB-202ENST00000399256 COL7A1Q02388 2944 aa8.51□□□□□ -1.05
APOB-202ENST00000399256 SPAG11AQ6PDA7 123 aa8.51□□□□□ -1.05
APOB-202ENST00000399256 Q96NJ1 140 aa8.51□□□□□ -1.05
APOB-202ENST00000399256 NDUFS5O43920 106 aa8.5□□□□□ -1.05
APOB-202ENST00000399256 PRKDCP78527 4128 aaKnown RBP8.5□□□□□ -1.05
APOB-202ENST00000399256 UBE2DNLQ8IWF7 75 aa8.49□□□□□ -1.05
APOB-202ENST00000399256 PANO1I0J062 215 aa8.48□□□□□ -1.05
APOB-202ENST00000399256 C8orf17Q9NRJ1 99 aa8.48□□□□□ -1.05
APOB-202ENST00000399256 IGHV6-1A0A0B4J1U7 121 aa8.47□□□□□ -1.05
APOB-202ENST00000399256 ATP11AUNQ6ZP68 121 aa8.47□□□□□ -1.05
APOB-202ENST00000399256 KTN1-AS1Q86SY8 53 aa8.47□□□□□ -1.05
APOB-202ENST00000399256 TP53AIP1Q9HCN2 124 aa8.47□□□□□ -1.05
APOB-202ENST00000399256 MEGF8Q7Z7M0 2845 aa8.47□□□□□ -1.05
APOB-202ENST00000399256 MOBPQ13875 183 aa8.47□□□□□ -1.05
APOB-202ENST00000399256 ASB16-AS1Q495Z4 193 aa8.46□□□□□ -1.06
APOB-202ENST00000399256 C14orf177Q52M58 125 aa8.46□□□□□ -1.06
APOB-202ENST00000399256 KRTAP13-1Q8IUC0 172 aa8.45□□□□□ -1.06
APOB-202ENST00000399256 STAB2Q8WWQ8 2551 aa8.45□□□□□ -1.06
APOB-202ENST00000399256 Q6ZR54 194 aa8.45□□□□□ -1.06
APOB-202ENST00000399256 CDC42SE1Q9NRR8 79 aa8.44□□□□□ -1.06
APOB-202ENST00000399256 LINC01558Q9Y6Z2 57 aa8.44□□□□□ -1.06
APOB-202ENST00000399256 HRES1P13985 223 aa8.43□□□□□ -1.06
APOB-202ENST00000399256 A6NN06 94 aa8.42□□□□□ -1.06
APOB-202ENST00000399256 A0A1B0GVX0 72 aa8.41□□□□□ -1.06
APOB-202ENST00000399256 PLAC8Q9NZF1 115 aa8.4□□□□□ -1.06
APOB-202ENST00000399256 A0A087X002 238 aa8.4□□□□□ -1.06
APOB-202ENST00000399256 SPINK7P58062 85 aa8.4□□□□□ -1.06
APOB-202ENST00000399256 NOTCH2NLQ7Z3S9 236 aa8.4□□□□□ -1.06
APOB-202ENST00000399256 DYNC2H1Q8NCM8 4307 aaKnown RBP8.4□□□□□ -1.07
APOB-202ENST00000399256 CDK2AP2O75956 126 aa8.39□□□□□ -1.07
APOB-202ENST00000399256 RBM12B-AS1Q9P1G2 102 aa8.39□□□□□ -1.07
APOB-202ENST00000399256 MRPL34Q9BQ48 92 aaKnown RBP8.38□□□□□ -1.07
APOB-202ENST00000399256 ANAPC11Q9NYG5 84 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms