RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 Q5VV11 94 aa3.73□□□□□ -1.81
RFFL-202ENST00000394597 C7orf33Q8WU49 177 aa3.72□□□□□ -1.81
RFFL-202ENST00000394597 IGLV5-52A0A0A0MRZ9 124 aa3.72□□□□□ -1.81
RFFL-202ENST00000394597 WWC2-AS2Q96NR7 200 aa3.72□□□□□ -1.81
RFFL-202ENST00000394597 REG3GQ6UW15 175 aa3.72□□□□□ -1.81
RFFL-202ENST00000394597 Q8N9P0 234 aaPredicted RBP3.71□□□□□ -1.81
RFFL-202ENST00000394597 SVEP1Q4LDE5 3571 aa3.71□□□□□ -1.81
RFFL-202ENST00000394597 CSMD1Q96PZ7 3565 aa3.71□□□□□ -1.81
RFFL-202ENST00000394597 APLNQ9ULZ1 77 aa3.71□□□□□ -1.82
RFFL-202ENST00000394597 RPL37AP61513 92 aaKnown RBP3.71□□□□□ -1.82
RFFL-202ENST00000394597 LINC00528Q8N1L1 170 aa3.71□□□□□ -1.82
RFFL-202ENST00000394597 C15orf56Q8N910 161 aa3.7□□□□□ -1.82
RFFL-202ENST00000394597 TENM4Q6N022 2769 aa3.7□□□□□ -1.82
RFFL-202ENST00000394597 FLG2Q5D862 2391 aaPredicted RBP3.7□□□□□ -1.82
RFFL-202ENST00000394597 A0A1B0GU69 56 aa3.7□□□□□ -1.82
RFFL-202ENST00000394597 LINC01554Q52M75 96 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 ASH1LQ9NR48 2969 aaKnown RBP3.69□□□□□ -1.82
RFFL-202ENST00000394597 NBEAL2Q6ZNJ1 2754 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 IGLV9-49A0A0B4J1Y8 123 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 Q75L30 129 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 SPANXA2-OT1Q8N9U9 137 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 MXRA5Q9NR99 2828 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 LINC00476Q8WZB0 136 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 PRAC1Q96KF2 57 aa3.69□□□□□ -1.82
RFFL-202ENST00000394597 Q8N377 158 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 Q9BRP9 147 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 ZNF706Q9Y5V0 76 aaPredicted RBP3.68□□□□□ -1.82
RFFL-202ENST00000394597 NF1P21359 2839 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 PDZD2O15018 2839 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 DMBT1Q9UGM3 2413 aaPredicted RBP3.68□□□□□ -1.82
RFFL-202ENST00000394597 IGHV6-1A0A0B4J1U7 121 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 A0A1W2PNM2 257 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 Q6ZRX8 168 aa3.68□□□□□ -1.82
RFFL-202ENST00000394597 PHF5AQ7RTV0 110 aaKnown RBP3.67□□□□□ -1.82
RFFL-202ENST00000394597 NBPF19A0A087WUL8 3843 aa3.67□□□□□ -1.82
RFFL-202ENST00000394597 A8MU10 97 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 K7ERS5 55 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 TP53AIP1Q9HCN2 124 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 LINC00313P59037 77 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 AKAP9Q99996 3911 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 TLX1NBP0CAT3 122 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 PRLHP81277 87 aa3.66□□□□□ -1.82
RFFL-202ENST00000394597 RTL8CO15255 209 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 CASC10Q5T4H9 136 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 KCNQ1DNQ9H478 68 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 ACYP2P14621 99 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 DSCR10P59022 87 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 MOBPQ13875 183 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 Q8NDZ9 215 aa3.65□□□□□ -1.82
RFFL-202ENST00000394597 A0A0G2JQZ4 141 aa3.65□□□□□ -1.83
RFFL-202ENST00000394597 A0A1W2PNN7 141 aa3.65□□□□□ -1.83
RFFL-202ENST00000394597 IGLV5-48A0A075B6I7 105 aa3.64□□□□□ -1.83
RFFL-202ENST00000394597 FAM168BA1KXE4 195 aa3.64□□□□□ -1.83
RFFL-202ENST00000394597 CHTF8P0CG12 524 aa3.64□□□□□ -1.83
RFFL-202ENST00000394597 CIRBP-AS1Q8TBR5 109 aa3.64□□□□□ -1.83
RFFL-202ENST00000394597 NIPBLQ6KC79 2804 aaeCLIP3.64□□□□□ -1.83
RFFL-202ENST00000394597 PLA2G2DQ9UNK4 145 aa3.64□□□□□ -1.83
RFFL-202ENST00000394597 C9orf163Q8N9P6 203 aa3.63□□□□□ -1.83
RFFL-202ENST00000394597 IGLV1-50A0A075B6I6 118 aa3.63□□□□□ -1.83
RFFL-202ENST00000394597 A0A087WTM6 91 aa3.63□□□□□ -1.83
RFFL-202ENST00000394597 A8MWP4 228 aa3.63□□□□□ -1.83
RFFL-202ENST00000394597 UQCR11O14957 56 aa3.63□□□□□ -1.83
RFFL-202ENST00000394597 CNBPP62633 177 aaKnown RBP3.63□□□□□ -1.83
RFFL-202ENST00000394597 STAB2Q8WWQ8 2551 aa3.63□□□□□ -1.83
RFFL-202ENST00000394597 IGLV8-61A0A075B6I0 122 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 A0A0A0MQY5 61 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 SPINK7P58062 85 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 MIR22HGQ0VDD5 57 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 KRTAP21-3Q3LHN1 58 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 IGFL1Q6UW32 110 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 LINC01558Q9Y6Z2 57 aa3.62□□□□□ -1.83
RFFL-202ENST00000394597 A6NN06 94 aa3.61□□□□□ -1.83
RFFL-202ENST00000394597 SPINK1P00995 79 aa3.61□□□□□ -1.83
RFFL-202ENST00000394597 PRR26Q8N8Z3 221 aa3.61□□□□□ -1.83
RFFL-202ENST00000394597 IGLV7-46A0A075B6I9 117 aa3.6□□□□□ -1.83
RFFL-202ENST00000394597 KRTAP26-1Q6PEX3 210 aa3.6□□□□□ -1.83
RFFL-202ENST00000394597 ZCCHC13Q8WW36 166 aaKnown RBP3.6□□□□□ -1.83
RFFL-202ENST00000394597 SPRR4Q96PI1 79 aa3.59□□□□□ -1.83
RFFL-202ENST00000394597 IGLV5-37A0A075B6J1 123 aa3.59□□□□□ -1.84
RFFL-202ENST00000394597 CELSR1Q9NYQ6 3014 aa3.58□□□□□ -1.84
RFFL-202ENST00000394597 OTOGQ6ZRI0 2925 aa3.58□□□□□ -1.84
RFFL-202ENST00000394597 CSAG1Q6PB30 78 aa3.57□□□□□ -1.84
RFFL-202ENST00000394597 KRTAP3-3Q9BYR6 98 aa3.57□□□□□ -1.84
RFFL-202ENST00000394597 KRTAP3-2Q9BYR7 98 aa3.57□□□□□ -1.84
RFFL-202ENST00000394597 KRTAP1-5Q9BYS1 174 aa3.57□□□□□ -1.84
RFFL-202ENST00000394597 CSMD2Q7Z408 3487 aa3.56□□□□□ -1.84
RFFL-202ENST00000394597 SPINT4Q6UDR6 99 aa3.55□□□□□ -1.84
RFFL-202ENST00000394597 MRPL34Q9BQ48 92 aaKnown RBP3.55□□□□□ -1.84
RFFL-202ENST00000394597 TNP2Q05952 138 aa3.55□□□□□ -1.84
RFFL-202ENST00000394597 C8orf17Q9NRJ1 99 aa3.55□□□□□ -1.84
RFFL-202ENST00000394597 LCE6AA0A183 80 aa3.55□□□□□ -1.84
RFFL-202ENST00000394597 ANK3Q12955 4377 aaKnown RBP3.54□□□□□ -1.84
RFFL-202ENST00000394597 IGKV2D-30A0A075B6S6 120 aa3.54□□□□□ -1.84
RFFL-202ENST00000394597 IGKV2-30P06310 120 aa3.54□□□□□ -1.84
RFFL-202ENST00000394597 HRES1P13985 223 aa3.54□□□□□ -1.84
RFFL-202ENST00000394597 SPACA4Q8TDM5 124 aa3.54□□□□□ -1.84
RFFL-202ENST00000394597 SSBP3-AS1Q7Z2R9 100 aa3.54□□□□□ -1.84
RFFL-202ENST00000394597 ZNF861PO60384 105 aa3.53□□□□□ -1.84
RFFL-202ENST00000394597 ADM2Q7Z4H4 148 aa3.53□□□□□ -1.84
RFFL-202ENST00000394597 PSORS1C2Q9UIG4 136 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms