RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SPINK6Q6UWN8 80 aa10.38□□□□□ -0.75
PCDH1-203ENST00000394536 IGFL1Q6UW32 110 aa10.37□□□□□ -0.75
PCDH1-203ENST00000394536 H0Y9P7 68 aa10.36□□□□□ -0.75
PCDH1-203ENST00000394536 ZNF469Q96JG9 3925 aaPredicted RBP10.36□□□□□ -0.75
PCDH1-203ENST00000394536 PCOTHQ58A44 107 aa10.36□□□□□ -0.75
PCDH1-203ENST00000394536 SPTSSBQ8NFR3 76 aa10.36□□□□□ -0.75
PCDH1-203ENST00000394536 EPM2AB3EWF7 344 aa10.34□□□□□ -0.75
PCDH1-203ENST00000394536 A0A1B0GW54 56 aa10.32□□□□□ -0.76
PCDH1-203ENST00000394536 TLX1NBP0CAT3 122 aa10.32□□□□□ -0.76
PCDH1-203ENST00000394536 FP248Q71RG6 208 aaPredicted RBP10.31□□□□□ -0.76
PCDH1-203ENST00000394536 C16orf90A8MZG2 172 aa10.31□□□□□ -0.76
PCDH1-203ENST00000394536 DSCR10P59022 87 aa10.3□□□□□ -0.76
PCDH1-203ENST00000394536 C1orf64Q8NEQ6 169 aa10.3□□□□□ -0.76
PCDH1-203ENST00000394536 CHKB-CPT1BH3BT56 60 aa10.3□□□□□ -0.76
PCDH1-203ENST00000394536 FAM229BQ4G0N7 80 aa10.29□□□□□ -0.76
PCDH1-203ENST00000394536 IGHV6-1A0A0B4J1U7 121 aa10.29□□□□□ -0.76
PCDH1-203ENST00000394536 TRRAPQ9Y4A5 3859 aa10.28□□□□□ -0.76
PCDH1-203ENST00000394536 K7EIL1 84 aa10.26□□□□□ -0.77
PCDH1-203ENST00000394536 PLA2G2DQ9UNK4 145 aa10.26□□□□□ -0.77
PCDH1-203ENST00000394536 PRR15LQ9BU68 103 aa10.24□□□□□ -0.77
PCDH1-203ENST00000394536 A6NED7 52 aa10.22□□□□□ -0.77
PCDH1-203ENST00000394536 hDV103S1A0JD37 113 aa10.21□□□□□ -0.77
PCDH1-203ENST00000394536 SPRR4Q96PI1 79 aa10.21□□□□□ -0.77
PCDH1-203ENST00000394536 A8MUN3 132 aa10.19□□□□□ -0.78
PCDH1-203ENST00000394536 SPRR1AP35321 89 aa10.19□□□□□ -0.78
PCDH1-203ENST00000394536 IGLV5-37A0A075B6J1 123 aa10.18□□□□□ -0.78
PCDH1-203ENST00000394536 MDFIQ99750 246 aa10.18□□□□□ -0.78
PCDH1-203ENST00000394536 PMAIP1Q13794 54 aa10.17□□□□□ -0.78
PCDH1-203ENST00000394536 PRR15Q8IV56 129 aa10.16□□□□□ -0.78
PCDH1-203ENST00000394536 MOBPQ13875 183 aa10.16□□□□□ -0.78
PCDH1-203ENST00000394536 CIRBP-AS1Q8TBR5 109 aa10.16□□□□□ -0.78
PCDH1-203ENST00000394536 TENM2Q9NT68 2774 aa10.15□□□□□ -0.78
PCDH1-203ENST00000394536 A8MWP4 228 aa10.15□□□□□ -0.79
PCDH1-203ENST00000394536 ANAPC11Q9NYG5 84 aa10.15□□□□□ -0.79
PCDH1-203ENST00000394536 TRAV22A0A0B4J277 110 aa10.14□□□□□ -0.79
PCDH1-203ENST00000394536 KRTAP4-16G5E9R7 235 aaPredicted RBP10.14□□□□□ -0.79
PCDH1-203ENST00000394536 KRTAP1-5Q9BYS1 174 aa10.14□□□□□ -0.79
PCDH1-203ENST00000394536 TNP2Q05952 138 aa10.12□□□□□ -0.79
PCDH1-203ENST00000394536 RETNLBQ9BQ08 111 aa10.12□□□□□ -0.79
PCDH1-203ENST00000394536 KRTAP7-1Q8IUC3 87 aa10.12□□□□□ -0.79
PCDH1-203ENST00000394536 NBDYA0A0U1RRE5 68 aa10.11□□□□□ -0.79
PCDH1-203ENST00000394536 ZNF706Q9Y5V0 76 aaPredicted RBP10.09□□□□□ -0.79
PCDH1-203ENST00000394536 C9orf163Q8N9P6 203 aa10.09□□□□□ -0.79
PCDH1-203ENST00000394536 SPAG11AQ6PDA7 123 aa10.09□□□□□ -0.79
PCDH1-203ENST00000394536 NUPR2A6NF83 97 aa10.06□□□□□ -0.8
PCDH1-203ENST00000394536 CNBPP62633 177 aaKnown RBP10.06□□□□□ -0.8
PCDH1-203ENST00000394536 LY6G6CO95867 125 aa10.06□□□□□ -0.8
PCDH1-203ENST00000394536 IGLV5-52A0A0A0MRZ9 124 aa10.03□□□□□ -0.8
PCDH1-203ENST00000394536 LIMD2Q9BT23 127 aa10.02□□□□□ -0.8
PCDH1-203ENST00000394536 ANK3Q12955 4377 aaKnown RBP10.02□□□□□ -0.81
PCDH1-203ENST00000394536 SRRM2Q9UQ35 2752 aaKnown RBP10.02□□□□□ -0.81
PCDH1-203ENST00000394536 AKAP9Q99996 3911 aa10.02□□□□□ -0.81
PCDH1-203ENST00000394536 COA5Q86WW8 74 aa10.01□□□□□ -0.81
PCDH1-203ENST00000394536 H3BPC8 53 aa10□□□□□ -0.81
PCDH1-203ENST00000394536 APLNQ9ULZ1 77 aa10□□□□□ -0.81
PCDH1-203ENST00000394536 KRTAP11-1Q8IUC1 163 aa9.98□□□□□ -0.81
PCDH1-203ENST00000394536 RTL8CO15255 209 aa9.98□□□□□ -0.81
PCDH1-203ENST00000394536 TP53AIP1Q9HCN2 124 aa9.97□□□□□ -0.81
PCDH1-203ENST00000394536 C8orf17Q9NRJ1 99 aa9.97□□□□□ -0.81
PCDH1-203ENST00000394536 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.97□□□□□ -0.81
PCDH1-203ENST00000394536 C4orf48Q5BLP8 95 aa9.95□□□□□ -0.82
PCDH1-203ENST00000394536 PANO1I0J062 215 aa9.94□□□□□ -0.82
PCDH1-203ENST00000394536 PSORS1C2Q9UIG4 136 aa9.94□□□□□ -0.82
PCDH1-203ENST00000394536 Q1T7F1 81 aa9.93□□□□□ -0.82
PCDH1-203ENST00000394536 CYP4F30PQ9H0H9 118 aa9.93□□□□□ -0.82
PCDH1-203ENST00000394536 LINC00472Q9H8W2 130 aa9.93□□□□□ -0.82
PCDH1-203ENST00000394536 MRPL34Q9BQ48 92 aaKnown RBP9.92□□□□□ -0.82
PCDH1-203ENST00000394536 C1orf134Q5TEV5 83 aa9.91□□□□□ -0.82
PCDH1-203ENST00000394536 ZCCHC13Q8WW36 166 aaKnown RBP9.9□□□□□ -0.82
PCDH1-203ENST00000394536 IGLV8-61A0A075B6I0 122 aa9.9□□□□□ -0.83
PCDH1-203ENST00000394536 A0A087WTM6 91 aa9.9□□□□□ -0.83
PCDH1-203ENST00000394536 A0A1B0GVX0 72 aa9.9□□□□□ -0.83
PCDH1-203ENST00000394536 MMP24-AS1A0A0U1RRL7 71 aa9.89□□□□□ -0.83
PCDH1-203ENST00000394536 SPANXA2-OT1Q8N9U9 137 aa9.87□□□□□ -0.83
PCDH1-203ENST00000394536 ZNF861PO60384 105 aa9.86□□□□□ -0.83
PCDH1-203ENST00000394536 KRTAP29-1A8MX34 341 aaPredicted RBP9.84□□□□□ -0.83
PCDH1-203ENST00000394536 IGKV2D-30A0A075B6S6 120 aa9.84□□□□□ -0.83
PCDH1-203ENST00000394536 IGKV2-30P06310 120 aa9.84□□□□□ -0.83
PCDH1-203ENST00000394536 Q8N9P0 234 aaPredicted RBP9.84□□□□□ -0.83
PCDH1-203ENST00000394536 TGP01266 2768 aa9.83□□□□□ -0.84
PCDH1-203ENST00000394536 SPRR1BP22528 89 aa9.83□□□□□ -0.84
PCDH1-203ENST00000394536 SPACA4Q8TDM5 124 aa9.82□□□□□ -0.84
PCDH1-203ENST00000394536 SPINK1P00995 79 aa9.81□□□□□ -0.84
PCDH1-203ENST00000394536 PRR26Q8N8Z3 221 aa9.81□□□□□ -0.84
PCDH1-203ENST00000394536 LCE6AA0A183 80 aa9.8□□□□□ -0.84
PCDH1-203ENST00000394536 LOC101927531A0A1B0GV80 90 aa9.79□□□□□ -0.84
PCDH1-203ENST00000394536 CD164Q04900 197 aa9.78□□□□□ -0.84
PCDH1-203ENST00000394536 Q5VV11 94 aa9.78□□□□□ -0.84
PCDH1-203ENST00000394536 IGLV7-46A0A075B6I9 117 aa9.78□□□□□ -0.84
PCDH1-203ENST00000394536 LINC00313P59037 77 aa9.77□□□□□ -0.84
PCDH1-203ENST00000394536 A8MU10 97 aa9.77□□□□□ -0.85
PCDH1-203ENST00000394536 ACYP2P14621 99 aa9.76□□□□□ -0.85
PCDH1-203ENST00000394536 CSMD3Q7Z407 3707 aa9.75□□□□□ -0.85
PCDH1-203ENST00000394536 COL7A1Q02388 2944 aa9.75□□□□□ -0.85
PCDH1-203ENST00000394536 A0A087X002 238 aa9.72□□□□□ -0.85
PCDH1-203ENST00000394536 NOTCH2NLQ7Z3S9 236 aa9.72□□□□□ -0.85
PCDH1-203ENST00000394536 IGLV7-43P04211 117 aa9.71□□□□□ -0.85
PCDH1-203ENST00000394536 A0A1B0GU69 56 aa9.7□□□□□ -0.86
PCDH1-203ENST00000394536 WWC2-AS2Q96NR7 200 aa9.7□□□□□ -0.86
PCDH1-203ENST00000394536 HRES1P13985 223 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms