RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 DEFB130BP0DP73 79 aa5.88□□□□□ -1.47
PDGFC-201ENST00000274071 DEFB130AP0DP74 79 aa5.88□□□□□ -1.47
PDGFC-201ENST00000274071 ASB16-AS1Q495Z4 193 aa5.87□□□□□ -1.47
PDGFC-201ENST00000274071 NBEAL2Q6ZNJ1 2754 aa5.87□□□□□ -1.47
PDGFC-201ENST00000274071 RPL37AP61513 92 aaKnown RBP5.86□□□□□ -1.47
PDGFC-201ENST00000274071 IGLV1-51P01701 117 aa5.85□□□□□ -1.47
PDGFC-201ENST00000274071 TEP1Q99973 2627 aaKnown RBP5.85□□□□□ -1.47
PDGFC-201ENST00000274071 PCOTHQ58A44 107 aa5.85□□□□□ -1.47
PDGFC-201ENST00000274071 FN1P02751 2386 aaKnown RBP5.84□□□□□ -1.47
PDGFC-201ENST00000274071 IGLV5-37A0A075B6J1 123 aa5.84□□□□□ -1.47
PDGFC-201ENST00000274071 A0A0G2JQZ4 141 aa5.84□□□□□ -1.47
PDGFC-201ENST00000274071 A0A1W2PNN7 141 aa5.84□□□□□ -1.47
PDGFC-201ENST00000274071 HIVEP1P15822 2718 aa5.84□□□□□ -1.47
PDGFC-201ENST00000274071 NSD1Q96L73 2696 aaPredicted RBP5.84□□□□□ -1.47
PDGFC-201ENST00000274071 CSAG1Q6PB30 78 aa5.83□□□□□ -1.48
PDGFC-201ENST00000274071 ZNF706Q9Y5V0 76 aaPredicted RBP5.83□□□□□ -1.48
PDGFC-201ENST00000274071 HRES1P13985 223 aa5.82□□□□□ -1.48
PDGFC-201ENST00000274071 VWFP04275 2813 aa5.82□□□□□ -1.48
PDGFC-201ENST00000274071 A0A087X002 238 aa5.82□□□□□ -1.48
PDGFC-201ENST00000274071 Q6ZR54 194 aa5.82□□□□□ -1.48
PDGFC-201ENST00000274071 INAFM1C9JVW0 142 aa5.82□□□□□ -1.48
PDGFC-201ENST00000274071 KRTAP10-3P60369 221 aa5.82□□□□□ -1.48
PDGFC-201ENST00000274071 PRO0255Q9UI72 69 aa5.81□□□□□ -1.48
PDGFC-201ENST00000274071 BAHCC1Q9P281 2608 aa5.81□□□□□ -1.48
PDGFC-201ENST00000274071 H0Y9J4 135 aa5.81□□□□□ -1.48
PDGFC-201ENST00000274071 CMC4P56277 68 aaPredicted RBP5.81□□□□□ -1.48
PDGFC-201ENST00000274071 DHRS4-AS1Q9P1J3 65 aa5.81□□□□□ -1.48
PDGFC-201ENST00000274071 F8P00451 2351 aa5.8□□□□□ -1.48
PDGFC-201ENST00000274071 TENM1Q9UKZ4 2725 aa5.8□□□□□ -1.48
PDGFC-201ENST00000274071 CAMK2N2Q96S95 79 aa5.8□□□□□ -1.48
PDGFC-201ENST00000274071 Q6ZRX8 168 aa5.79□□□□□ -1.48
PDGFC-201ENST00000274071 C19orf73Q9NVV2 129 aa5.79□□□□□ -1.48
PDGFC-201ENST00000274071 A0A087WSZ3 146 aa5.79□□□□□ -1.48
PDGFC-201ENST00000274071 EGFEM1PQ0D2K5 195 aa5.79□□□□□ -1.48
PDGFC-201ENST00000274071 TRRAPQ9Y4A5 3859 aa5.78□□□□□ -1.48
PDGFC-201ENST00000274071 PRR34Q9NV39 138 aa5.77□□□□□ -1.49
PDGFC-201ENST00000274071 C1orf134Q5TEV5 83 aa5.77□□□□□ -1.49
PDGFC-201ENST00000274071 ATRQ13535 2644 aa5.77□□□□□ -1.49
PDGFC-201ENST00000274071 KRTAP4-16G5E9R7 235 aaPredicted RBP5.76□□□□□ -1.49
PDGFC-201ENST00000274071 IGFL1Q6UW32 110 aa5.76□□□□□ -1.49
PDGFC-201ENST00000274071 RPL37AP8A6NKH3 93 aa5.75□□□□□ -1.49
PDGFC-201ENST00000274071 SPATA8Q6RVD6 105 aa5.74□□□□□ -1.49
PDGFC-201ENST00000274071 MAST4O15021 2626 aa5.74□□□□□ -1.49
PDGFC-201ENST00000274071 A8MWP4 228 aa5.73□□□□□ -1.49
PDGFC-201ENST00000274071 IGKV2-24A0A0C4DH68 120 aa5.72□□□□□ -1.49
PDGFC-201ENST00000274071 SPRR1AP35321 89 aa5.71□□□□□ -1.5
PDGFC-201ENST00000274071 ROMO1P60602 79 aa5.7□□□□□ -1.5
PDGFC-201ENST00000274071 CSMD3Q7Z407 3707 aa5.7□□□□□ -1.5
PDGFC-201ENST00000274071 MMP24-AS1A0A0U1RRL7 71 aa5.7□□□□□ -1.5
PDGFC-201ENST00000274071 DEFB131BA0A096LNP1 70 aa5.69□□□□□ -1.5
PDGFC-201ENST00000274071 LELP1Q5T871 98 aa5.69□□□□□ -1.5
PDGFC-201ENST00000274071 C15orf56Q8N910 161 aa5.69□□□□□ -1.5
PDGFC-201ENST00000274071 LINC00472Q9H8W2 130 aa5.69□□□□□ -1.5
PDGFC-201ENST00000274071 IGHV6-1A0A0B4J1U7 121 aa5.68□□□□□ -1.5
PDGFC-201ENST00000274071 TENM2Q9NT68 2774 aa5.67□□□□□ -1.5
PDGFC-201ENST00000274071 MIR22HGQ0VDD5 57 aa5.67□□□□□ -1.5
PDGFC-201ENST00000274071 KRTAP26-1Q6PEX3 210 aa5.67□□□□□ -1.5
PDGFC-201ENST00000274071 X6R8D5 127 aa5.67□□□□□ -1.5
PDGFC-201ENST00000274071 FAM168BA1KXE4 195 aa5.66□□□□□ -1.5
PDGFC-201ENST00000274071 ALMS1Q8TCU4 4167 aa5.66□□□□□ -1.5
PDGFC-201ENST00000274071 OXLD1Q5BKU9 147 aa5.66□□□□□ -1.5
PDGFC-201ENST00000274071 REG3GQ6UW15 175 aa5.66□□□□□ -1.5
PDGFC-201ENST00000274071 TP53AIP1Q9HCN2 124 aa5.66□□□□□ -1.5
PDGFC-201ENST00000274071 DEFB4AO15263 64 aa5.65□□□□□ -1.5
PDGFC-201ENST00000274071 ANK2Q01484 3957 aa5.65□□□□□ -1.5
PDGFC-201ENST00000274071 STAB1Q9NY15 2570 aa5.65□□□□□ -1.51
PDGFC-201ENST00000274071 IGLV8-61A0A075B6I0 122 aa5.65□□□□□ -1.51
PDGFC-201ENST00000274071 A0A1B0GU69 56 aa5.65□□□□□ -1.51
PDGFC-201ENST00000274071 DEFB135Q30KP9 77 aa5.65□□□□□ -1.51
PDGFC-201ENST00000274071 ZNF861PO60384 105 aa5.64□□□□□ -1.51
PDGFC-201ENST00000274071 FBN1P35555 2871 aaKnown RBP5.64□□□□□ -1.51
PDGFC-201ENST00000274071 CMYA5Q8N3K9 4069 aa5.64□□□□□ -1.51
PDGFC-201ENST00000274071 PKD1L1Q8TDX9 2849 aa5.64□□□□□ -1.51
PDGFC-201ENST00000274071 UQCR11O14957 56 aa5.63□□□□□ -1.51
PDGFC-201ENST00000274071 KRTAP7-1Q8IUC3 87 aa5.63□□□□□ -1.51
PDGFC-201ENST00000274071 COL6A5A8TX70 2615 aa5.62□□□□□ -1.51
PDGFC-201ENST00000274071 PLA2G2DQ9UNK4 145 aa5.61□□□□□ -1.51
PDGFC-201ENST00000274071 SRRM2Q9UQ35 2752 aaKnown RBP5.61□□□□□ -1.51
PDGFC-201ENST00000274071 KRTAP24-1Q3LI83 254 aa5.6□□□□□ -1.51
PDGFC-201ENST00000274071 ACYP2P14621 99 aa5.59□□□□□ -1.51
PDGFC-201ENST00000274071 HTN3P15516 51 aa5.59□□□□□ -1.51
PDGFC-201ENST00000274071 P0C880 135 aa5.58□□□□□ -1.52
PDGFC-201ENST00000274071 KRTAP25-1Q3LHN0 102 aa5.58□□□□□ -1.52
PDGFC-201ENST00000274071 A0A0A0MQY5 61 aa5.57□□□□□ -1.52
PDGFC-201ENST00000274071 KRTAP10-11P60412 298 aa5.57□□□□□ -1.52
PDGFC-201ENST00000274071 SPART-AS1P0CW21 52 aa5.56□□□□□ -1.52
PDGFC-201ENST00000274071 K7EIL1 84 aa5.56□□□□□ -1.52
PDGFC-201ENST00000274071 TLX1NBP0CAT3 122 aa5.56□□□□□ -1.52
PDGFC-201ENST00000274071 PRLHP81277 87 aa5.55□□□□□ -1.52
PDGFC-201ENST00000274071 NOTCH1P46531 2555 aa5.55□□□□□ -1.52
PDGFC-201ENST00000274071 C8orf17Q9NRJ1 99 aa5.55□□□□□ -1.52
PDGFC-201ENST00000274071 DNAH3Q8TD57 4116 aa5.55□□□□□ -1.52
PDGFC-201ENST00000274071 DMAC1Q96GE9 116 aa5.54□□□□□ -1.52
PDGFC-201ENST00000274071 A0A096LNI7 61 aa5.52□□□□□ -1.53
PDGFC-201ENST00000274071 Q96NJ1 140 aa5.52□□□□□ -1.53
PDGFC-201ENST00000274071 TENM3Q9P273 2699 aa5.51□□□□□ -1.53
PDGFC-201ENST00000274071 IGLV5-52A0A0A0MRZ9 124 aa5.51□□□□□ -1.53
PDGFC-201ENST00000274071 NBEAL1Q6ZS30 2694 aa5.5□□□□□ -1.53
PDGFC-201ENST00000274071 MGAM2Q2M2H8 2515 aa5.5□□□□□ -1.53
PDGFC-201ENST00000274071 Q5W150 140 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms