RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NOTCH1P46531 2555 aa7.02□□□□□ -1.29
CD44-201ENST00000263398 C9orf163Q8N9P6 203 aa7.02□□□□□ -1.29
CD44-201ENST00000263398 CYP4F30PQ9H0H9 118 aa7.02□□□□□ -1.29
CD44-201ENST00000263398 C8orf17Q9NRJ1 99 aa7.01□□□□□ -1.29
CD44-201ENST00000263398 COL6A5A8TX70 2615 aa7.01□□□□□ -1.29
CD44-201ENST00000263398 STAB1Q9NY15 2570 aa7□□□□□ -1.29
CD44-201ENST00000263398 SSBP3-AS1Q7Z2R9 100 aa7□□□□□ -1.29
CD44-201ENST00000263398 ZNF861PO60384 105 aa6.99□□□□□ -1.29
CD44-201ENST00000263398 KRTAP1-3Q8IUG1 177 aa6.99□□□□□ -1.29
CD44-201ENST00000263398 Q96NJ1 140 aa6.99□□□□□ -1.29
CD44-201ENST00000263398 DCHS2Q6V1P9 2916 aa6.99□□□□□ -1.29
CD44-201ENST00000263398 A0A1W2PNM2 257 aa6.98□□□□□ -1.29
CD44-201ENST00000263398 OBSCN-AS1Q96MR7 158 aa6.98□□□□□ -1.29
CD44-201ENST00000263398 HRNRQ86YZ3 2850 aaPredicted RBP6.98□□□□□ -1.29
CD44-201ENST00000263398 A0A1B0GVX0 72 aa6.98□□□□□ -1.29
CD44-201ENST00000263398 A0A0G2JQZ4 141 aa6.97□□□□□ -1.29
CD44-201ENST00000263398 A0A1W2PNN7 141 aa6.97□□□□□ -1.29
CD44-201ENST00000263398 PLA2G1BP04054 148 aaKnown RBP6.97□□□□□ -1.29
CD44-201ENST00000263398 WWC2-AS2Q96NR7 200 aa6.97□□□□□ -1.29
CD44-201ENST00000263398 IGLV8-61A0A075B6I0 122 aa6.96□□□□□ -1.3
CD44-201ENST00000263398 IGLV5-48A0A075B6I7 105 aa6.96□□□□□ -1.3
CD44-201ENST00000263398 SMG1Q96Q15 3661 aaKnown RBP6.96□□□□□ -1.3
CD44-201ENST00000263398 KRTAP1-1Q07627 177 aa6.95□□□□□ -1.3
CD44-201ENST00000263398 FAM104AQ969W3 186 aa6.95□□□□□ -1.3
CD44-201ENST00000263398 A0A087WTM6 91 aa6.94□□□□□ -1.3
CD44-201ENST00000263398 CELSR2Q9HCU4 2923 aa6.94□□□□□ -1.3
CD44-201ENST00000263398 CNBPP62633 177 aaKnown RBP6.94□□□□□ -1.3
CD44-201ENST00000263398 UQCR11O14957 56 aa6.93□□□□□ -1.3
CD44-201ENST00000263398 CR1P17927 2039 aa6.93□□□□□ -1.3
CD44-201ENST00000263398 CASC10Q5T4H9 136 aa6.93□□□□□ -1.3
CD44-201ENST00000263398 LINC00336Q6ZUF6 198 aa6.93□□□□□ -1.3
CD44-201ENST00000263398 NBEAL1Q6ZS30 2694 aa6.93□□□□□ -1.3
CD44-201ENST00000263398 DSCR10P59022 87 aa6.92□□□□□ -1.3
CD44-201ENST00000263398 NF1P21359 2839 aa6.92□□□□□ -1.3
CD44-201ENST00000263398 IGLV5-37A0A075B6J1 123 aa6.92□□□□□ -1.3
CD44-201ENST00000263398 SPRR4Q96PI1 79 aa6.9□□□□□ -1.31
CD44-201ENST00000263398 APCP25054 2843 aa6.89□□□□□ -1.31
CD44-201ENST00000263398 SPANXA2-OT1Q8N9U9 137 aa6.89□□□□□ -1.31
CD44-201ENST00000263398 PSORS1C2Q9UIG4 136 aa6.88□□□□□ -1.31
CD44-201ENST00000263398 FBN2P35556 2912 aa6.88□□□□□ -1.31
CD44-201ENST00000263398 ANAPC11Q9NYG5 84 aa6.88□□□□□ -1.31
CD44-201ENST00000263398 APLNQ9ULZ1 77 aa6.87□□□□□ -1.31
CD44-201ENST00000263398 IGLV7-43P04211 117 aa6.87□□□□□ -1.31
CD44-201ENST00000263398 OCR1Q9BZK8 76 aa6.87□□□□□ -1.31
CD44-201ENST00000263398 LINC00304Q8N9R0 145 aa6.87□□□□□ -1.31
CD44-201ENST00000263398 CSMD1Q96PZ7 3565 aa6.84□□□□□ -1.31
CD44-201ENST00000263398 MIR22HGQ0VDD5 57 aa6.84□□□□□ -1.31
CD44-201ENST00000263398 SVEP1Q4LDE5 3571 aa6.84□□□□□ -1.32
CD44-201ENST00000263398 BAHCC1Q9P281 2608 aa6.82□□□□□ -1.32
CD44-201ENST00000263398 NSD1Q96L73 2696 aaPredicted RBP6.81□□□□□ -1.32
CD44-201ENST00000263398 WIPF1O43516 503 aa6.8□□□□□ -1.32
CD44-201ENST00000263398 HIVEP1P15822 2718 aa6.78□□□□□ -1.32
CD44-201ENST00000263398 NIPBLQ6KC79 2804 aaeCLIP6.78□□□□□ -1.32
CD44-201ENST00000263398 CELSR1Q9NYQ6 3014 aa6.77□□□□□ -1.33
CD44-201ENST00000263398 C9orf92A6NGG3 77 aa6.76□□□□□ -1.33
CD44-201ENST00000263398 MXRA5Q9NR99 2828 aa6.76□□□□□ -1.33
CD44-201ENST00000263398 Q8NDZ9 215 aa6.76□□□□□ -1.33
CD44-201ENST00000263398 CD164Q04900 197 aa6.76□□□□□ -1.33
CD44-201ENST00000263398 KTN1-AS1Q86SY8 53 aa6.75□□□□□ -1.33
CD44-201ENST00000263398 SMR3BP02814 79 aaPredicted RBP6.75□□□□□ -1.33
CD44-201ENST00000263398 SPINT4Q6UDR6 99 aa6.75□□□□□ -1.33
CD44-201ENST00000263398 SPRR1AP35321 89 aa6.74□□□□□ -1.33
CD44-201ENST00000263398 Q1T7F1 81 aa6.74□□□□□ -1.33
CD44-201ENST00000263398 CUBNO60494 3623 aa6.73□□□□□ -1.33
CD44-201ENST00000263398 PRR26Q8N8Z3 221 aa6.73□□□□□ -1.33
CD44-201ENST00000263398 CDC42SE1Q9NRR8 79 aa6.73□□□□□ -1.33
CD44-201ENST00000263398 IGLV7-46A0A075B6I9 117 aa6.72□□□□□ -1.33
CD44-201ENST00000263398 SPENQ96T58 3664 aaKnown RBP6.71□□□□□ -1.34
CD44-201ENST00000263398 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.71□□□□□ -1.34
CD44-201ENST00000263398 LCA10Q71F78 164 aa6.7□□□□□ -1.34
CD44-201ENST00000263398 CRIPTQ9P021 101 aa6.7□□□□□ -1.34
CD44-201ENST00000263398 Q8N1X5 172 aa6.7□□□□□ -1.34
CD44-201ENST00000263398 FLG2Q5D862 2391 aaPredicted RBP6.69□□□□□ -1.34
CD44-201ENST00000263398 TNP2Q05952 138 aa6.68□□□□□ -1.34
CD44-201ENST00000263398 J3QL48 77 aa6.67□□□□□ -1.34
CD44-201ENST00000263398 MMP24-AS1A0A0U1RRL7 71 aa6.67□□□□□ -1.34
CD44-201ENST00000263398 CYSTM1Q9H1C7 97 aa6.66□□□□□ -1.34
CD44-201ENST00000263398 SPRR1BP22528 89 aa6.66□□□□□ -1.34
CD44-201ENST00000263398 COX6B2Q6YFQ2 88 aa6.64□□□□□ -1.35
CD44-201ENST00000263398 HRES1P13985 223 aa6.64□□□□□ -1.35
CD44-201ENST00000263398 FAM229BQ4G0N7 80 aa6.63□□□□□ -1.35
CD44-201ENST00000263398 Q5XG85 94 aa6.62□□□□□ -1.35
CD44-201ENST00000263398 Q8N9P0 234 aaPredicted RBP6.62□□□□□ -1.35
CD44-201ENST00000263398 LINC00472Q9H8W2 130 aa6.62□□□□□ -1.35
CD44-201ENST00000263398 PLAC8Q9NZF1 115 aa6.62□□□□□ -1.35
CD44-201ENST00000263398 RBM12B-AS1Q9P1G2 102 aa6.62□□□□□ -1.35
CD44-201ENST00000263398 KRTAP26-1Q6PEX3 210 aa6.62□□□□□ -1.35
CD44-201ENST00000263398 FP248Q71RG6 208 aaPredicted RBP6.62□□□□□ -1.35
CD44-201ENST00000263398 Q75L30 129 aa6.62□□□□□ -1.35
CD44-201ENST00000263398 KMT2BQ9UMN6 2715 aaPredicted RBP6.6□□□□□ -1.35
CD44-201ENST00000263398 LINC01558Q9Y6Z2 57 aa6.6□□□□□ -1.35
CD44-201ENST00000263398 STAB2Q8WWQ8 2551 aa6.59□□□□□ -1.35
CD44-201ENST00000263398 A0A0D9SG42 100 aa6.58□□□□□ -1.36
CD44-201ENST00000263398 TENM4Q6N022 2769 aa6.57□□□□□ -1.36
CD44-201ENST00000263398 CSMD2Q7Z408 3487 aa6.57□□□□□ -1.36
CD44-201ENST00000263398 KRTAP1-5Q9BYS1 174 aa6.55□□□□□ -1.36
CD44-201ENST00000263398 A0A1B0GU33 70 aa6.55□□□□□ -1.36
CD44-201ENST00000263398 NBPF19A0A087WUL8 3843 aa6.54□□□□□ -1.36
CD44-201ENST00000263398 DMBT1Q9UGM3 2413 aaPredicted RBP6.54□□□□□ -1.36
CD44-201ENST00000263398 LINC01554Q52M75 96 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms