RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 NSD1Q96L73 2696 aaPredicted RBP9.51□□□□□ -0.89
PTPRA-201ENST00000216877 CDC42SE1Q9NRR8 79 aa9.51□□□□□ -0.89
PTPRA-201ENST00000216877 IGLV5-48A0A075B6I7 105 aa9.51□□□□□ -0.89
PTPRA-201ENST00000216877 LCE6AA0A183 80 aa9.51□□□□□ -0.89
PTPRA-201ENST00000216877 IGLV1-51P01701 117 aa9.49□□□□□ -0.89
PTPRA-201ENST00000216877 SERTAD4-AS1Q5TG53 156 aa9.49□□□□□ -0.89
PTPRA-201ENST00000216877 PHF5AQ7RTV0 110 aaKnown RBP9.49□□□□□ -0.89
PTPRA-201ENST00000216877 Q75L30 129 aa9.48□□□□□ -0.89
PTPRA-201ENST00000216877 DHRS4-AS1Q9P1J3 65 aa9.48□□□□□ -0.89
PTPRA-201ENST00000216877 LELP1Q5T871 98 aa9.48□□□□□ -0.89
PTPRA-201ENST00000216877 SPINK7P58062 85 aa9.47□□□□□ -0.89
PTPRA-201ENST00000216877 OTOGQ6ZRI0 2925 aa9.47□□□□□ -0.89
PTPRA-201ENST00000216877 GVQW2A0A096LPI5 108 aaPredicted RBP9.46□□□□□ -0.89
PTPRA-201ENST00000216877 LINC00476Q8WZB0 136 aa9.46□□□□□ -0.89
PTPRA-201ENST00000216877 C19orf73Q9NVV2 129 aa9.45□□□□□ -0.9
PTPRA-201ENST00000216877 TRRAPQ9Y4A5 3859 aa9.45□□□□□ -0.9
PTPRA-201ENST00000216877 KCNQ1DNQ9H478 68 aa9.45□□□□□ -0.9
PTPRA-201ENST00000216877 FAM168BA1KXE4 195 aa9.45□□□□□ -0.9
PTPRA-201ENST00000216877 KRTAP1-3Q8IUG1 177 aa9.45□□□□□ -0.9
PTPRA-201ENST00000216877 X6R8D5 127 aa9.45□□□□□ -0.9
PTPRA-201ENST00000216877 LINC00313P59037 77 aa9.44□□□□□ -0.9
PTPRA-201ENST00000216877 Q6ZRX8 168 aa9.43□□□□□ -0.9
PTPRA-201ENST00000216877 Q9BRP9 147 aa9.43□□□□□ -0.9
PTPRA-201ENST00000216877 ADM2Q7Z4H4 148 aa9.43□□□□□ -0.9
PTPRA-201ENST00000216877 SPART-AS1P0CW21 52 aa9.4□□□□□ -0.9
PTPRA-201ENST00000216877 SPANXA2-OT1Q8N9U9 137 aa9.4□□□□□ -0.91
PTPRA-201ENST00000216877 PRR34Q9NV39 138 aa9.38□□□□□ -0.91
PTPRA-201ENST00000216877 IGFL1Q6UW32 110 aa9.37□□□□□ -0.91
PTPRA-201ENST00000216877 SPRR4Q96PI1 79 aa9.37□□□□□ -0.91
PTPRA-201ENST00000216877 A0A1B0GW54 56 aa9.36□□□□□ -0.91
PTPRA-201ENST00000216877 PRLHP81277 87 aa9.36□□□□□ -0.91
PTPRA-201ENST00000216877 UBE2DNLQ8IWF7 75 aa9.36□□□□□ -0.91
PTPRA-201ENST00000216877 DNAH1Q9P2D7 4330 aa9.35□□□□□ -0.91
PTPRA-201ENST00000216877 C15orf56Q8N910 161 aa9.35□□□□□ -0.91
PTPRA-201ENST00000216877 LINC01554Q52M75 96 aa9.33□□□□□ -0.92
PTPRA-201ENST00000216877 KRTAP1-1Q07627 177 aa9.33□□□□□ -0.92
PTPRA-201ENST00000216877 IGKV2-24A0A0C4DH68 120 aa9.32□□□□□ -0.92
PTPRA-201ENST00000216877 PRR26Q8N8Z3 221 aa9.32□□□□□ -0.92
PTPRA-201ENST00000216877 Q8NAQ8 132 aa9.31□□□□□ -0.92
PTPRA-201ENST00000216877 TNP2Q05952 138 aa9.3□□□□□ -0.92
PTPRA-201ENST00000216877 H3BPC8 53 aa9.3□□□□□ -0.92
PTPRA-201ENST00000216877 KRTAP10-3P60369 221 aa9.3□□□□□ -0.92
PTPRA-201ENST00000216877 LINC01558Q9Y6Z2 57 aa9.29□□□□□ -0.92
PTPRA-201ENST00000216877 CNBPP62633 177 aaKnown RBP9.28□□□□□ -0.92
PTPRA-201ENST00000216877 KRTAP24-1Q3LI83 254 aa9.28□□□□□ -0.92
PTPRA-201ENST00000216877 IGLV7-46A0A075B6I9 117 aa9.28□□□□□ -0.92
PTPRA-201ENST00000216877 IGLV1-50A0A075B6I6 118 aa9.27□□□□□ -0.93
PTPRA-201ENST00000216877 CSMD3Q7Z407 3707 aa9.26□□□□□ -0.93
PTPRA-201ENST00000216877 C9orf163Q8N9P6 203 aa9.26□□□□□ -0.93
PTPRA-201ENST00000216877 REG3GQ6UW15 175 aa9.26□□□□□ -0.93
PTPRA-201ENST00000216877 DEFB131BA0A096LNP1 70 aa9.25□□□□□ -0.93
PTPRA-201ENST00000216877 KRTAP29-1A8MX34 341 aaPredicted RBP9.24□□□□□ -0.93
PTPRA-201ENST00000216877 A8MWP4 228 aa9.22□□□□□ -0.93
PTPRA-201ENST00000216877 RETNLBQ9BQ08 111 aa9.22□□□□□ -0.93
PTPRA-201ENST00000216877 HRES1P13985 223 aa9.21□□□□□ -0.93
PTPRA-201ENST00000216877 PKD1L1Q8TDX9 2849 aa9.2□□□□□ -0.94
PTPRA-201ENST00000216877 SRRM2Q9UQ35 2752 aaKnown RBP9.2□□□□□ -0.94
PTPRA-201ENST00000216877 IGHV6-1A0A0B4J1U7 121 aa9.2□□□□□ -0.94
PTPRA-201ENST00000216877 FBN1P35555 2871 aaKnown RBP9.19□□□□□ -0.94
PTPRA-201ENST00000216877 CDK2AP2O75956 126 aa9.19□□□□□ -0.94
PTPRA-201ENST00000216877 VWFP04275 2813 aa9.19□□□□□ -0.94
PTPRA-201ENST00000216877 LYSTQ99698 3801 aa9.18□□□□□ -0.94
PTPRA-201ENST00000216877 DYNC2H1Q8NCM8 4307 aaKnown RBP9.18□□□□□ -0.94
PTPRA-201ENST00000216877 TENM1Q9UKZ4 2725 aa9.17□□□□□ -0.94
PTPRA-201ENST00000216877 KRTAP4-16G5E9R7 235 aaPredicted RBP9.15□□□□□ -0.94
PTPRA-201ENST00000216877 CASC10Q5T4H9 136 aa9.15□□□□□ -0.94
PTPRA-201ENST00000216877 CSAG1Q6PB30 78 aa9.14□□□□□ -0.95
PTPRA-201ENST00000216877 KRTAP26-1Q6PEX3 210 aa9.14□□□□□ -0.95
PTPRA-201ENST00000216877 IGLV8-61A0A075B6I0 122 aa9.13□□□□□ -0.95
PTPRA-201ENST00000216877 IGLV9-49A0A0B4J1Y8 123 aa9.13□□□□□ -0.95
PTPRA-201ENST00000216877 IGLV5-37A0A075B6J1 123 aa9.12□□□□□ -0.95
PTPRA-201ENST00000216877 A0A1B0GU69 56 aa9.12□□□□□ -0.95
PTPRA-201ENST00000216877 MMP24-AS1A0A0U1RRL7 71 aa9.11□□□□□ -0.95
PTPRA-201ENST00000216877 SPRR1AP35321 89 aa9.1□□□□□ -0.95
PTPRA-201ENST00000216877 SPINK6Q6UWN8 80 aa9.08□□□□□ -0.96
PTPRA-201ENST00000216877 ZNF706Q9Y5V0 76 aaPredicted RBP9.08□□□□□ -0.96
PTPRA-201ENST00000216877 DNAH7Q8WXX0 4024 aa9.07□□□□□ -0.96
PTPRA-201ENST00000216877 KRTAP7-1Q8IUC3 87 aa9.07□□□□□ -0.96
PTPRA-201ENST00000216877 FLG2Q5D862 2391 aaPredicted RBP9.07□□□□□ -0.96
PTPRA-201ENST00000216877 LINC00472Q9H8W2 130 aa9.06□□□□□ -0.96
PTPRA-201ENST00000216877 STAB2Q8WWQ8 2551 aa9.06□□□□□ -0.96
PTPRA-201ENST00000216877 K7EIL1 84 aa9.06□□□□□ -0.96
PTPRA-201ENST00000216877 TP53AIP1Q9HCN2 124 aa9.06□□□□□ -0.96
PTPRA-201ENST00000216877 KRTAP10-11P60412 298 aa9.05□□□□□ -0.96
PTPRA-201ENST00000216877 PLA2G1BP04054 148 aaKnown RBP9.04□□□□□ -0.96
PTPRA-201ENST00000216877 MIR22HGQ0VDD5 57 aa9.03□□□□□ -0.96
PTPRA-201ENST00000216877 C8orf17Q9NRJ1 99 aa9.02□□□□□ -0.97
PTPRA-201ENST00000216877 PLAC8Q9NZF1 115 aa9.02□□□□□ -0.97
PTPRA-201ENST00000216877 LINC01556Q5JQF7 62 aa9.01□□□□□ -0.97
PTPRA-201ENST00000216877 ACYP2P14621 99 aa9.01□□□□□ -0.97
PTPRA-201ENST00000216877 PRKDCP78527 4128 aaKnown RBP9□□□□□ -0.97
PTPRA-201ENST00000216877 CHTF8P0CG12 524 aa8.99□□□□□ -0.97
PTPRA-201ENST00000216877 PLA2G2DQ9UNK4 145 aa8.99□□□□□ -0.97
PTPRA-201ENST00000216877 C1orf134Q5TEV5 83 aa8.99□□□□□ -0.97
PTPRA-201ENST00000216877 TLX1NBP0CAT3 122 aa8.97□□□□□ -0.97
PTPRA-201ENST00000216877 Q6ZR54 194 aa8.97□□□□□ -0.97
PTPRA-201ENST00000216877 HUWE1Q7Z6Z7 4374 aaKnown RBP8.96□□□□□ -0.97
PTPRA-201ENST00000216877 UQCR11O14957 56 aa8.96□□□□□ -0.98
PTPRA-201ENST00000216877 MRPL34Q9BQ48 92 aaKnown RBP8.95□□□□□ -0.98
PTPRA-201ENST00000216877 DNAH9Q9NYC9 4486 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms