RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PCP2Q8IVA1 136 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 LINC00337Q8N6G1 96 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 LINC00469Q8N7U9 141 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 PLEKHB2Q96CS7 222 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 LINC00167Q96N53 147 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 FSIP2Q5CZC0 6907 aa3.66□□□□□ -1.82
CUX1-220ENST00000607092 TMEM223A0PJW6 202 aa3.66□□□□□ -1.82
CUX1-220ENST00000607092 LEPROTO15243 131 aa3.66□□□□□ -1.82
CUX1-220ENST00000607092 HINT1P49773 126 aaPredicted RBP3.66□□□□□ -1.82
CUX1-220ENST00000607092 RPL24P83731 157 aaKnown RBP3.66□□□□□ -1.82
CUX1-220ENST00000607092 TMEM170BQ5T4T1 132 aa3.66□□□□□ -1.82
CUX1-220ENST00000607092 MUC17Q685J3 4493 aa3.66□□□□□ -1.82
CUX1-220ENST00000607092 IGLV5-45A0A087WSX0 123 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 A0A1B0GV90 55 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 H3BRM9 83 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 J3QQQ9 107 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 ZNF22P17026 224 aaPredicted RBP3.65□□□□□ -1.83
CUX1-220ENST00000607092 BATFQ16520 125 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 SFTA2Q6UW10 78 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 KRTAP13-1Q8IUC0 172 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 COX7B2Q8TF08 81 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 PPDPFQ9H3Y8 114 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 CDKN2A-AS1Q9UH64 79 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 NDUFA12Q9UI09 145 aa3.65□□□□□ -1.83
CUX1-220ENST00000607092 ZNF706Q9Y5V0 76 aaPredicted RBP3.65□□□□□ -1.83
CUX1-220ENST00000607092 RPL37AP8A6NKH3 93 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 ZNF815PA8K554 130 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 SMIM13P0DJ93 91 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 LGALS3P17931 250 aaKnown RBP3.64□□□□□ -1.83
CUX1-220ENST00000607092 SEC61BP60468 96 aaKnown RBP3.64□□□□□ -1.83
CUX1-220ENST00000607092 KRTAP13-2Q52LG2 175 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 Q6ZVH6 145 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 CEND1Q8N111 149 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 RETNLBQ9BQ08 111 aa3.64□□□□□ -1.83
CUX1-220ENST00000607092 SPANXB1Q9NS25 103 aaPredicted RBP3.64□□□□□ -1.83
CUX1-220ENST00000607092 TAX1BP3O14907 124 aa3.63□□□□□ -1.83
CUX1-220ENST00000607092 COX17Q14061 63 aa3.63□□□□□ -1.83
CUX1-220ENST00000607092 SCGB1D4Q6XE38 83 aa3.63□□□□□ -1.83
CUX1-220ENST00000607092 HIST1H4GQ99525 98 aa3.63□□□□□ -1.83
CUX1-220ENST00000607092 IGKV2-28A0A075B6P5 120 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 A0A0J9YXY3 114 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 A0A1B0GWB2 263 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 SMIM1B2RUZ4 78 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 TIMM17BO60830 172 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 IGKV2D-28P01615 120 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 ASB16-AS1Q495Z4 193 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 FAM19A1Q7Z5A9 133 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 TTTY13Q9BZ97 58 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 TMEM126AQ9H061 195 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 ANAPC11Q9NYG5 84 aa3.62□□□□□ -1.83
CUX1-220ENST00000607092 IGLV5-39A0A0G2JS06 123 aa3.61□□□□□ -1.83
CUX1-220ENST00000607092 TMEM238C9JI98 176 aa3.61□□□□□ -1.83
CUX1-220ENST00000607092 SPINK1P00995 79 aa3.61□□□□□ -1.83
CUX1-220ENST00000607092 UBE2V1Q13404 147 aa3.61□□□□□ -1.83
CUX1-220ENST00000607092 DAND5Q8N907 189 aa3.61□□□□□ -1.83
CUX1-220ENST00000607092 IFITM1P13164 125 aa3.6□□□□□ -1.83
CUX1-220ENST00000607092 HERV-K104P63124 156 aa3.6□□□□□ -1.83
CUX1-220ENST00000607092 PRLHP81277 87 aa3.6□□□□□ -1.83
CUX1-220ENST00000607092 COPS9Q8WXC6 57 aa3.6□□□□□ -1.83
CUX1-220ENST00000607092 HIGD2AQ9BW72 106 aa3.6□□□□□ -1.83
CUX1-220ENST00000607092 FXYD2P54710 66 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 TSPEAR-AS2P59090 65 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 RPS29P62273 56 aaKnown RBP3.59□□□□□ -1.83
CUX1-220ENST00000607092 VAMP3Q15836 100 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 GTF2H5Q6ZYL4 71 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 SPANXDQ9BXN6 97 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 SPANXCQ9NY87 97 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 ERG28Q9UKR5 140 aa3.59□□□□□ -1.83
CUX1-220ENST00000607092 M0R378 163 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 SPINK8P0C7L1 97 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 VPREB1P12018 145 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 PFN2P35080 140 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 KRTAP13-3Q3SY46 172 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 SPRR4Q96PI1 79 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 SND1-IT1Q9HBX3 110 aa3.58□□□□□ -1.84
CUX1-220ENST00000607092 NHP2Q9NX24 153 aaKnown RBP3.58□□□□□ -1.84
CUX1-220ENST00000607092 A0A0B4J2C4 111 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 A0A1W2PPM0 123 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 SLC25A20O43772 301 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 CFC1BP0CG36 223 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 FABP2P12104 132 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 LYRM7Q5U5X0 104 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 MUSTN1Q8IVN3 82 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 C3orf22Q8N5N4 141 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 ZNF625Q96I27 306 aaPredicted RBP3.57□□□□□ -1.84
CUX1-220ENST00000607092 CRCT1Q9UGL9 99 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 PRO1854Q9UHT4 67 aa3.57□□□□□ -1.84
CUX1-220ENST00000607092 A4D1N5 150 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 H3BUT2 72 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 CFC1P0CG37 223 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 SSBP3-AS1Q7Z2R9 100 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 Q8NBF4 154 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 RAB37Q96AX2 223 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 LITAFQ99732 161 aa3.56□□□□□ -1.84
CUX1-220ENST00000607092 TRBV20-1A0A075B6N2 111 aa3.55□□□□□ -1.84
CUX1-220ENST00000607092 ETDCA0A1B0GVM5 59 aa3.55□□□□□ -1.84
CUX1-220ENST00000607092 K7EP34 96 aa3.55□□□□□ -1.84
CUX1-220ENST00000607092 MEIG1Q5JSS6 88 aa3.55□□□□□ -1.84
CUX1-220ENST00000607092 F8W1H4 67 aa3.54□□□□□ -1.84
CUX1-220ENST00000607092 LINC00158P58513 81 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms